|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
328-621 |
1.44e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 1.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 328 ARTKGTLEKTILLLQHTQKDCERLREDLEDKGLEwIQRQQEKEYLHRTELKQAEEKLMEVQLRAKlkfcELESQLRAKDE 407
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELE-LEEAQAEEYELLAELARLEQDIARLEERRR----ELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 408 ESKQAQEayrmevshKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSL 487
Cdd:COG1196 324 ELAELEE--------ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 488 TKELNTLKANKEHNERDLRDRLALSQDEISvlrtssqrrspctslpdnASAELNRLTSEADSLRCVLELKQAEISALSKA 567
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEE------------------LEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 116007266 568 KADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYK 621
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
360-619 |
1.94e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 1.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 360 LEWIQRQQEK--EYLHRTELKQAEEKLMEVQLRAKLKfcELESQLRAKDEESKQAQEAYRMEVS------HKLALKQEHL 431
Cdd:COG1196 234 LRELEAELEEleAELEELEAELEELEAELAELEAELE--ELRLELEELELELEEAQAEEYELLAelarleQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 432 RTAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLAL 511
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 512 SQDEISVLRTSSQRRspctSLPDNASAELNRLTSEAdslrcvLELKQAEISALSKAKADLIHESEERLKLSNRVALLEAQ 591
Cdd:COG1196 392 LRAAAELAAQLEELE----EAEEALLERLERLEEEL------EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260
....*....|....*....|....*...
gi 116007266 592 NEMLRTELEAKTEKEKEIQQKMEELQKA 619
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEA 489
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
363-619 |
1.78e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 1.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 363 IQRQQEKEYLhRTELKQAEEKLMEvqLRAKLKfcELESQLRAKDEESKQAQEAYRmEVSHKLALKQEHLRTAEQKIQELQ 442
Cdd:TIGR02168 673 LERRREIEEL-EEKIEELEEKIAE--LEKALA--ELRKELEELEEELEQLRKELE-ELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 443 TRLQQVETEeqghREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEHNER---DLRDRLALSQDEISVL 519
Cdd:TIGR02168 747 ERIAQLSKE----LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 520 RtssQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEIS----ALSKAKADLIHESEERLKLSNRVALLEAQNEML 595
Cdd:TIGR02168 823 R---ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEeleeLIEELESELEALLNERASLEEALALLRSELEEL 899
|
250 260
....*....|....*....|....
gi 116007266 596 RTELEAKTEKEKEIQQKMEELQKA 619
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREK 923
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
335-658 |
8.96e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 8.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 335 EKTILLLQHTQKDCERLREDLE--DKGLEWIQRQQEK--EYLhrtELKQAEEklmEVQLR-AKLKFCELESQLRAKDEES 409
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNelERQLKSLERQAEKaeRYK---ELKAELR---ELELAlLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 410 KQAQEAYRmEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENihtaRLAEANQREQDLIDRVKSLTK 489
Cdd:TIGR02168 249 KEAEEELE-ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ----QKQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 490 ELNTLKANKEhnerDLRDRLALSQDEISVLRTSSqrrspctslpDNASAELNRLTSEADSLRCVLELKQAEISALSKAKA 569
Cdd:TIGR02168 324 QLEELESKLD----ELAEELAELEEKLEELKEEL----------ESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 570 DLiheSEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTR-----LTYDKEELQYHLKQR 644
Cdd:TIGR02168 390 QL---ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEeeleeLQEELERLEEALEEL 466
|
330
....*....|....
gi 116007266 645 SLQLQSAESKLQDL 658
Cdd:TIGR02168 467 REELEEAEQALDAA 480
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
376-658 |
2.85e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 2.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 376 ELKQAEEKLMEVQLRAKlkfcELESQLRAKDEESKQAQEAyrmevshklalkqehlrtaeqkiQELQTRLQQVETEEQGH 455
Cdd:COG1196 180 KLEATEENLERLEDILG----ELERQLEPLERQAEKAERY-----------------------RELKEELKELEAELLLL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 456 REELIRkenihtARLAEANQREQDLIDRVKSLTKELNTLKANKEHnerdLRDRLALSQDEISVLRTSSQRrspctslpdn 535
Cdd:COG1196 233 KLRELE------AELEELEAELEELEAELEELEAELAELEAELEE----LRLELEELELELEEAQAEEYE---------- 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 536 ASAELNRLTSEADSLRcvlELKQAEISALSKAKADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEE 615
Cdd:COG1196 293 LLAELARLEQDIARLE---ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 116007266 616 LQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDL 658
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
421-668 |
1.25e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.24 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 421 SHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELirkeNIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEH 500
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL----AALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 501 NERDLRDRLALSQDEISVLRTSSQRRSPCTSLpdnASAELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLK 580
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLL---SPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 581 LSNRVALLEAQNEMLRTELEAKtekEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDLST 660
Cdd:COG4942 172 ERAELEALLAELEEERAALEAL---KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
....*...
gi 116007266 661 GSHDNSLS 668
Cdd:COG4942 249 AALKGKLP 256
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
331-634 |
1.28e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 331 KGTLEKTILLLQHtqkdcERLREDLE--DKGLEWIQRQQEKeylhRTELKQAEEKLMEvQLRAKLKfcELESQLRAKDEE 408
Cdd:TIGR02169 220 KREYEGYELLKEK-----EALERQKEaiERQLASLEEELEK----LTEEISELEKRLE-EIEQLLE--ELNKKIKDLGEE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 409 SKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREElirKENIHTARLAEANQREQdLIDRVKSLT 488
Cdd:TIGR02169 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE---IEELEREIEEERKRRDK-LTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 489 KELNTLKANKEHNE---RDLRDRLALSQDEISVLRtssQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALS 565
Cdd:TIGR02169 364 EELEDLRAELEEVDkefAETRDELKDYREKLEKLK---REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116007266 566 ---KAKADLIHESEERLK-LSNRVALLEAQNEMLRTELEaktEKEKEIQQKMEELQKAYKYESIKRTRLTYDK 634
Cdd:TIGR02169 441 eekEDKALEIKKQEWKLEqLAADLSKYEQELYDLKEEYD---RVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
331-650 |
1.73e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.24 E-value: 1.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 331 KGTLEKTILLLQHtQKDCERLREDLEDKGLEWIQRQQEKEYLhRTELKQAEEKLMEvqLRAKLKFCELESQLRAKDEESK 410
Cdd:COG4717 60 KPQGRKPELNLKE-LKELEEELKEAEEKEEEYAELQEELEEL-EEELEELEAELEE--LREELEKLEKLLQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 411 QAQEayrmevshKLALKQEHLRTAEQKIQELQTRLQQVE------TEEQGHREELIRKENIHT-ARLAEANQREQDLIDR 483
Cdd:COG4717 136 ALEA--------ELAELPERLEELEERLEELRELEEELEeleaelAELQEELEELLEQLSLATeEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 484 VKSLTKELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQRRSPCT-----SLPDNASAELNRLTSEADSLRCVLELKQ 558
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIaaallALLGLGGSLLSLILTIAGVLFLVLGLLA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 559 AEISALSKAKADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEiqqkmEELQKAYKYESIKRTRLTYDKEELQ 638
Cdd:COG4717 288 LLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPE-----ELLELLDRIEELQELLREAEELEEE 362
|
330
....*....|..
gi 116007266 639 YHLKQRSLQLQS 650
Cdd:COG4717 363 LQLEELEQEIAA 374
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
370-658 |
2.52e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.06 E-value: 2.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 370 EYLHRTELKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQAQEAYRMEV-SHKLALKQEHLRTAEQK--IQELQTRLQ 446
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQlKEKLELEEEYLLYLDYLklNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 447 QVETEEQGHREELIRKENIHtARLAEANQREQDLIDRVKSLTKE-LNTLKANKEHNERDLRDRLALSQDEISVLRTSSQR 525
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKE-EEKLAQVLKENKEEEKEKKLQEEeLKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 526 RSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLK--------LSNRVALLEAQNEMLRT 597
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAkkkleserLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116007266 598 ELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDL 658
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD 463
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
333-510 |
4.88e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 4.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 333 TLEKTILLLQHTQKDCERLREDLEDK--------GLEWIQRQQEKEyLHRTELKQAEEKLmeVQLRAKLKfcELESQLRA 404
Cdd:COG4913 246 DAREQIELLEPIRELAERYAAARERLaeleylraALRLWFAQRRLE-LLEAELEELRAEL--ARLEAELE--RLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 405 KDEESKQAQEAYR-------MEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIR--------------KE 463
Cdd:COG4913 321 LREELDELEAQIRgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAlraeaaallealeeEL 400
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 116007266 464 NIHTARLAEANQREQDLIDRVKSLTKELNTLKANK---EHNERDLRDRLA 510
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLERRKsniPARLLALRDALA 450
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
425-667 |
7.03e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.38 E-value: 7.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 425 ALKQEHLRTAEQK--IQELQTRLQQVE-TEEQGHREELIRKenihtaRLAEANQReqdlidrVKSLTKELNTLKANKEHN 501
Cdd:PRK11281 47 ALNKQKLLEAEDKlvQQDLEQTLALLDkIDRQKEETEQLKQ------QLAQAPAK-------LRQAQAELEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 502 ERDLRDRLALSQDEISVLRTSSQRRspctslpdNASAELNRLTSEADSLRCVLELKQAEISALSK--------------A 567
Cdd:PRK11281 114 TRETLSTLSLRQLESRLAQTLDQLQ--------NAQNDLAEYNSQLVSLQTQPERAQAALYANSQrlqqirnllkggkvG 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 568 KADLIHEseERLKLSNRVALLEAQNEMLRTELEAKTekekeiqQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQ 647
Cdd:PRK11281 186 GKALRPS--QRVLLQAEQALLNAQNDLQRKSLEGNT-------QLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLT 256
|
250 260
....*....|....*....|...
gi 116007266 648 L---QSAESKLQDLSTGSHDNSL 667
Cdd:PRK11281 257 LsekTVQEAQSQDEAARIQANPL 279
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
281-674 |
1.07e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 281 ARLAKFFQDTQFERKEEQrqilglSVMVQFMSKELDAVACKENKHQCARTKGTLE---KTILLLQHTQKDCERLREDLED 357
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQS------SIEEQRRLLQTLHSQEIHIRDAHEVATSIREiscQQHTLTQHIHTLQQQKTTLTQK 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 358 KGLEWIQRQQEKEYLHRTELKQAEEKLMEVQLRAKLKFCELEsqlrakdEESKQAQEAYRMEVSHKLALKQEHLRTAEQK 437
Cdd:TIGR00618 395 LQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQ-------QRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 438 IQELQTRLQQVETEEQghREELIRKENIHTARLAEANQRE-------------------------QDLIDRVKSLTKELN 492
Cdd:TIGR00618 468 LKEREQQLQTKEQIHL--QETRKKAVVLARLLELQEEPCPlcgscihpnparqdidnpgpltrrmQRGEQTYAQLETSEE 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 493 TLkankEHNERDLRDRLALSQDEISVLRTSSQRRSPCtslpdnasaeLNRLTSEADSLRCVLELKQAEISALSKAKADLI 572
Cdd:TIGR00618 546 DV----YHQLTSERKQRASLKEQMQEIQQSFSILTQC----------DNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 573 HESEERL-----------------KLSNRVALLEAQNEMLRTELEAKTEKEKEI------QQKMEELQKAYKYESIKRTR 629
Cdd:TIGR00618 612 CEQHALLrklqpeqdlqdvrlhlqQCSQELALKLTALHALQLTLTQERVREHALsirvlpKELLASRQLALQKMQSEKEQ 691
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 116007266 630 LTYDKEELQYHLkqrsLQLQSAESKLQDLSTGSHDNSLSSHSRCS 674
Cdd:TIGR00618 692 LTYWKEMLAQCQ----TLLRELETHIEEYDREFNEIENASSSLGS 732
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
398-617 |
1.16e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 398 LESQLRAKDEESKQAQEAYRMEvshkLALKQEHLRTAEQKIQELQTRLQQVETEEQGHR-----EELIRKENIHTARLAE 472
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQ----LPELRKELEEAEAALEEFRQKNGLVDLSEEAKLllqqlSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 473 ANQREQDLIDRVKSLTKELNTLKANKEhnERDLRDRLALSQDEISVLRTSSQRRSPctslpD--NASAELNRLTSE-ADS 549
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPV--IQQLRAQLAELEAELAELSARYTPNHP-----DviALRAQIAALRAQlQQE 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116007266 550 LRCVLELKQAEISALSKAKADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQ 617
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
345-682 |
2.56e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 2.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 345 QKDCERLREDLED--KGLEWIQRQQEKEYLHRTELKQAEEKLMEVQLRAKLKFCELESQLRaKDEESKQAQEAYRMEVSH 422
Cdd:PTZ00121 1456 AKKAEEAKKKAEEakKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK-KAEEAKKADEAKKAEEAK 1534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 423 KL--ALKQEHLRTAEQ--KIQELQtRLQQVETEEQGHREEliRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANK 498
Cdd:PTZ00121 1535 KAdeAKKAEEKKKADElkKAEELK-KAEEKKKAEEAKKAE--EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 499 EHNERDLRDRLALSQDEISVLRTSSQRRSpctslpdnasaelnrltSEADSLRCVLELKQAEISALSKAKADLIHESEER 578
Cdd:PTZ00121 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKK-----------------KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 579 LKLSNrvalLEAQNEMLRTELEAKTEKEKEiQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDL 658
Cdd:PTZ00121 1675 KKAEE----AKKAEEDEKKAAEALKKEAEE-AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
330 340
....*....|....*....|....
gi 116007266 659 STGSHDNSLSSHSRCSLGRSGLEI 682
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEI 1773
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
334-620 |
2.94e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 2.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 334 LEKTILLLQHTQKDCERLREDLEDKGLEWIQRQQEKEY---LHRTELKQAEEKLMEVQLRAKlKFCELESQLRAKDEESK 410
Cdd:TIGR04523 150 KEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKnidKIKNKLLKLELLLSNLKKKIQ-KNKSLESQISELKKQNN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 411 QAQEayrmevshKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENihtaRLAEANQREQDLIDRVKSLTKE 490
Cdd:TIGR04523 229 QLKD--------NIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK----ELEQNNKKIKELEKQLNQLKSE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 491 LNTLKANKEHN-ERDLRDRLALSQDEISVLRTS-SQRRSPCTSLPD---NASAELNRLTSEADSLRCVLELKQAEISALS 565
Cdd:TIGR04523 297 ISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQiSQNNKIISQLNEqisQLKKELTNSESENSEKQRELEEKQNEIEKLK 376
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 116007266 566 KAKADLIHESEErlklsnrvalLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAY 620
Cdd:TIGR04523 377 KENQSYKQEIKN----------LESQINDLESKIQNQEKLNQQKDEQIKKLQQEK 421
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
327-638 |
8.77e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 8.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 327 CARTKGTLEKTILLLQhtqKDCERLREDLEDKGLEWIQRQQEKEYLhRTELKQAEEKLMEVQLRA---KLKFCELESQLR 403
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLE---QEEEKLKERLEELEEDLSSLEQEIENV-KSELKELEARIEELEEDLhklEEALNDLEARLS 789
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 404 ----AKDEESKQAQEAYRMEVSHKLA-----LKQEHLRT--AEQKIQELQTrlQQVETEEQghREELIRKENIHTARLAE 472
Cdd:TIGR02169 790 hsriPEIQAELSKLEEEVSRIEARLReieqkLNRLTLEKeyLEKEIQELQE--QRIDLKEQ--IKSIEKEIENLNGKKEE 865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 473 ANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDrlalSQDEIsvlrtssqrrspctslpDNASAELNRLTSEADSLRC 552
Cdd:TIGR02169 866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRE----LERKI-----------------EELEAQIEKKRKRLSELKA 924
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 553 VLELKQAEISALSKAKADLIHESEERLKLSNrvalLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTY 632
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGEDEEIPEEELSLED----VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEE 1000
|
....*.
gi 116007266 633 DKEELQ 638
Cdd:TIGR02169 1001 ERKAIL 1006
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
433-654 |
2.05e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.90 E-value: 2.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 433 TAEQKIQELQTRLQQVETEEQGHREELIRKEnihtARLAEANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALS 512
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQ----AELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 513 QDEISVLRTSSQRRSPCTSLPDNASaeLNRLTSEADSLRCVLELKQAEISALSKAKAdliheseerlKLSNRVALLEAQN 592
Cdd:COG3883 89 GERARALYRSGGSVSYLDVLLGSES--FSDFLDRLSALSKIADADADLLEELKADKA----------ELEAKKAELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116007266 593 EMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESK 654
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
401-658 |
2.95e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 47.81 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 401 QLRAKDEESKQAQEAYRMEVSHKLA----------LKQEHLRTAEQKiQELQTRLQQVEteeqghreelirkenihtARL 470
Cdd:pfam05557 4 LIESKARLSQLQNEKKQMELEHKRArielekkasaLKRQLDRESDRN-QELQKRIRLLE------------------KRE 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 471 AEANQREQDLIDRVKSLTK---ELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQRrspctslpdnASAELNRLTSEA 547
Cdd:pfam05557 65 AEAEEALREQAELNRLKKKyleALNKKLNEKESQLADAREVISCLKNELSELRRQIQR----------AELELQSTNSEL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 548 DSLRCVLELKQAEISALSK------AKADLIHESEERLK-LSNRVALLEAQNEMLRT---ELEAKTEKEKEIQQKMEELQ 617
Cdd:pfam05557 135 EELQERLDLLKAKASEAEQlrqnleKQQSSLAEAEQRIKeLEFEIQSQEQDSEIVKNsksELARIPELEKELERLREHNK 214
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 116007266 618 kayKYESIKRTRLTYdKEELqYHLKQRSLQLQSAESKLQDL 658
Cdd:pfam05557 215 ---HLNENIENKLLL-KEEV-EDLKRKLEREEKYREEAATL 250
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-629 |
3.15e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 340 LLQHTQKDCERLREDLedKGLEWIQRQQEKEYLH-RTELKQAEEKLMEVQLRAKLKfcELESQLRAKD-EESKQAQEAYR 417
Cdd:PRK03918 453 LLEEYTAELKRIEKEL--KEIEEKERKLRKELRElEKVLKKESELIKLKELAEQLK--ELEEKLKKYNlEELEKKAEEYE 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 418 --MEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELirkENIHTARLAEANQREQDLIDRVKSLT---KELN 492
Cdd:PRK03918 529 klKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL---AELLKELEELGFESVEELEERLKELEpfyNEYL 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 493 TLKaNKEHNERDLRDRLALSQDEIsvlrtssqrrspctslpDNASAELNRLTSEADSLRcvlelkqAEISALSKAKADLI 572
Cdd:PRK03918 606 ELK-DAEKELEREEKELKKLEEEL-----------------DKAFEELAETEKRLEELR-------KELEELEKKYSEEE 660
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116007266 573 HE--SEERLKLSNRVALLEAQ---NEMLRTELEAKTEKEKEIQQKMEELQKayKYESIKRTR 629
Cdd:PRK03918 661 YEelREEYLELSRELAGLRAEleeLEKRREEIKKTLEKLKEELEEREKAKK--ELEKLEKAL 720
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
351-602 |
6.15e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 6.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 351 LREDLED--KGLEWIQRQQEKEYLHRTELKQAEEKLMEVQlraklkfCELEsqlRAKDEESKQAQEAYRmevshKLALKQ 428
Cdd:PRK11281 61 VQQDLEQtlALLDKIDRQKEETEQLKQQLAQAPAKLRQAQ-------AELE---ALKDDNDEETRETLS-----TLSLRQ 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 429 ehlrtAEQKIQELQTRLQQVETEEQGHREELI----RKENIHTArLAEANQREQDlidrvksLTKELNTLKANKEHNERD 504
Cdd:PRK11281 126 -----LESRLAQTLDQLQNAQNDLAEYNSQLVslqtQPERAQAA-LYANSQRLQQ-------IRNLLKGGKVGGKALRPS 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 505 LRDRLALSQD----EISVLRTSSQRRSPCTSL----PDNASAELNRLTSEADSLRCVLELKQAEIS------ALSKAKA- 569
Cdd:PRK11281 193 QRVLLQAEQAllnaQNDLQRKSLEGNTQLQDLlqkqRDYLTARIQRLEHQLQLLQEAINSKRLTLSektvqeAQSQDEAa 272
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 116007266 570 -----DLIH-ESEERLKLSNRvaLLEAQ---NEMLRTELEAK 602
Cdd:PRK11281 273 riqanPLVAqELEINLQLSQR--LLKATeklNTLTQQNLRVK 312
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
346-636 |
6.98e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 6.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 346 KDCERLREDLEDKGLEWIQRQQEKEYLHR---TELKQAEEKLMEVQLRAklkfceLESQLRAKDEESKQAQEAyrmevsh 422
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALrkaEEAKKAEEARIEEVMKL------YEEEKKMKAEEAKKAEEA------- 1618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 423 klALKQEHLRTAEQkIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKElntlkankEHNE 502
Cdd:PTZ00121 1619 --KIKAEELKKAEE-EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA--------EEDE 1687
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 503 RDLRDRLALSQDEisvLRTSSQRRSPCTSlpDNASAELNRLTSEADSLRcVLELKQAEISALSKAKADLIHESEErlkls 582
Cdd:PTZ00121 1688 KKAAEALKKEAEE---AKKAEELKKKEAE--EKKKAEELKKAEEENKIK-AEEAKKEAEEDKKKAEEAKKDEEEK----- 1756
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 116007266 583 NRVALLEAQNEmlRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEE 636
Cdd:PTZ00121 1757 KKIAHLKKEEE--KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFA 1808
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
364-624 |
7.01e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 7.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 364 QRQQEKEYLhRTELKQAEEKLMEVQLRAKlkfcELESQLRAKDEESKQAQEAYRmevshklALKQEhLRTAEQKIQELQT 443
Cdd:COG4942 24 EAEAELEQL-QQEIAELEKELAALKKEEK----ALLKQLAALERRIAALARRIR-------ALEQE-LAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 444 RLQQVETEEQGHREELIRkenihtaRLAEA----NQREQDLIDRVKSLTKELNTLKANKEHNERDlrdrlalsQDEISVL 519
Cdd:COG4942 91 EIAELRAELEAQKEELAE-------LLRALyrlgRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR--------REQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 520 RtssqrrspctslpdnasAELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLsnrVALLEAQNEMLRTEL 599
Cdd:COG4942 156 R-----------------ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKL---LARLEKELAELAAEL 215
|
250 260
....*....|....*....|....*
gi 116007266 600 EAKTEKEKEIQQKMEELQKAYKYES 624
Cdd:COG4942 216 AELQQEAEELEALIARLEAEAAAAA 240
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
312-654 |
9.23e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 9.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 312 SKELDAVACKENKHQCARTKGTLEKtilllqhtQKDCERLREDLEDKGLEWIQRQQEKEYLHRTELKQAEEKLMEVQLRA 391
Cdd:PTZ00121 1341 AKKAAEAAKAEAEAAADEAEAAEEK--------AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 392 KLKFCELESQLRAKDEESKQAQEAYRmevshklalKQEHLRTAEqkiqELQTRLQQVETEEQGHREELIRKENIHTARLA 471
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADEAKK---------KAEEAKKAD----EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 472 EANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQRRSPctslPDNASAELNRltsEADSLR 551
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA----DEAKKAEEKK---KADELK 1552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 552 CVLELKQAEisalSKAKADLIHESEERLKLSNRVALLEAQNEMLRTElEAKTEKEKEIQQKMEELQKAyKYESIKRTRLT 631
Cdd:PTZ00121 1553 KAEELKKAE----EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE-EVMKLYEEEKKMKAEEAKKA-EEAKIKAEELK 1626
|
330 340
....*....|....*....|...
gi 116007266 632 YDKEELQyhlKQRSLQLQSAESK 654
Cdd:PTZ00121 1627 KAEEEKK---KVEQLKKKEAEEK 1646
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
313-615 |
9.37e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 9.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 313 KELDAVACKENKHQCARTKGTLEKTILLLQHTQKDCERLREDLEDKGLEWIQR--QQEKEYLHRTELKQAEEKLMEVQLR 390
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEieSSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 391 AKlKFCELESQLRAKDEESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIH---- 466
Cdd:pfam02463 280 EK-KLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEeeee 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 467 ---TARLAEANQREQDLIDRVKSLTKELNTLKANKEhNERDLRDRLALSQDEISVLRtsSQRRSPCTSLPDNASAELNRL 543
Cdd:pfam02463 359 eelEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE-EELELKSEEEKEAQLLLELA--RQLEDLLKEEKKEELEILEEE 435
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116007266 544 TSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLSNRvALLEAQNEMLRTELEAKTEKEKEIQQKMEE 615
Cdd:pfam02463 436 EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKE-TQLVKLQEQLELLLSRQKLEERSQKESKAR 506
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
389-619 |
9.68e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 9.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 389 LRAKLKfcELESQLRAKDEESKQAQEAyRMEVSHKLAL---KQEHLRTAEQKIQELQTRLQQVETEEQGHREELirkeNI 465
Cdd:PRK02224 211 LESELA--ELDEEIERYEEQREQARET-RDEADEVLEEheeRREELETLEAEIEDLRETIAETEREREELAEEV----RD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 466 HTARLAEANQREQDLIDRVKSLTKELNTLKANKEhnerDLRDRLALSQDEISVLRTSSQR-RSPCTSLPDNASA------ 538
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARRE----ELEDRDEELRDRLEECRVAAQAhNEEAESLREDADDleerae 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 539 ----ELNRLTSEADSLRCVLELKQAEISALSKAkadlIHESEERLKLSNrVAL--LEAQNEMLRTELEAKTEKEKEIQQK 612
Cdd:PRK02224 360 elreEAAELESELEEAREAVEDRREEIEELEEE----IEELRERFGDAP-VDLgnAEDFLEELREERDELREREAELEAT 434
|
....*..
gi 116007266 613 MEELQKA 619
Cdd:PRK02224 435 LRTARER 441
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
437-619 |
1.08e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 437 KIQELQTRLQQVETEEQGHREELIRKEnihtARLAEANQREQDLIDRVKSLTKELntlkANKEHNERDLRDRLALSQDEI 516
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELE----DELAALEARLEAAKTELEDLEKEI----KRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 517 SVLRTSSqrrspctslpdnasaELNRLTSEADSLRcvlelkqAEISALSKAKADLIHESEErlkLSNRVALLEAQNEMLR 596
Cdd:COG1579 83 GNVRNNK---------------EYEALQKEIESLK-------RRISDLEDEILELMERIEE---LEEELAELEAELAELE 137
|
170 180
....*....|....*....|....*..
gi 116007266 597 TELEAKT----EKEKEIQQKMEELQKA 619
Cdd:COG1579 138 AELEEKKaeldEELAELEAELEELEAE 164
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
353-636 |
1.23e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 353 EDLEDKGLEWIQRQQEKEYLHRTElKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQAQEAYRMEVSHKLALKQEHLR 432
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKADEAK-KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 433 TAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEaNQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALS 512
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE-EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELK 1558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 513 QDEiSVLRTSSQRRSPCTSLPDNASAELNRLTSEAdslRCVLELKQAEISALSKAKaDLIHESEERLKlsnrvALLEAQN 592
Cdd:PTZ00121 1559 KAE-EKKKAEEAKKAEEDKNMALRKAEEAKKAEEA---RIEEVMKLYEEEKKMKAE-EAKKAEEAKIK-----AEELKKA 1628
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 116007266 593 EMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEE 636
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
364-649 |
1.33e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 364 QRQQEKEYLHRTELKQ-AEEKLMEVQLRAKLkfcelesqlrakdEESKQAQEAyrmEVSHKLALKQEHLRTAEQKIQELQ 442
Cdd:pfam17380 288 QQQEKFEKMEQERLRQeKEEKAREVERRRKL-------------EEAEKARQA---EMDRQAAIYAEQERMAMERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 443 tRLQQvetEEQGHREELIRKENI--HTARLAEANQREQDLIDRVKSLTKELNTLKANK-EHNERDLRDRLALSQDEISVL 519
Cdd:pfam17380 352 -RIRQ---EERKRELERIRQEEIamEISRMRELERLQMERQQKNERVRQELEAARKVKiLEEERQRKIQQQKVEMEQIRA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 520 RTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLSN-RVALLEAQNEMLRTE 598
Cdd:pfam17380 428 EQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEqRRKILEKELEERKQA 507
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 116007266 599 LEAKTEKEKEIQQKMEELQKAYkYESIKRTRLTYDKEELQYHLKQRSLQLQ 649
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKAI-YEEERRREAEEERRKQQEMEERRRIQEQ 557
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
346-627 |
1.49e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 346 KDCERLREDLEDKGLEWIQRQQEKEYLHrtELKQAEEKLMEVQLRAKLKFCELESQLRAKD----EESKQAQEAYRMEVS 421
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDARKAE--EARKAEDARKAEEARKAEDAKRVEIARKAEDarkaEEARKAEDAKKAEAA 1181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 422 HKL--ALKQEHLRTAE--QKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKAN 497
Cdd:PTZ00121 1182 RKAeeVRKAEELRKAEdaRKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEAR 1261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 498 KEHNERDLRDRLALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISAlsKAKADLIHESEE 577
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA--KKKADAAKKKAE 1339
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 116007266 578 RLKLSNRVAllEAQNEMLRTELEAKTEKEKEIQQKMEELQKayKYESIKR 627
Cdd:PTZ00121 1340 EAKKAAEAA--KAEAEAAADEAEAAEEKAEAAEKKKEEAKK--KADAAKK 1385
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
349-622 |
1.88e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 349 ERLREDLEDKGLEWIQRQQEKEYLHRTELKQAEEKL-MEVQLRAKLKFCELESQLRAKDEESKQAQEayrmEVSHKLalk 427
Cdd:PRK05771 34 EDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLnPLREEKKKVSVKSLEELIKDVEEELEKIEK----EIKELE--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 428 qEHLRTAEQKIQELQTRLQQVE------TEEqghrEELIRKENIH--TARLAEANQREQDLIDRVKSL-----TKELNTL 494
Cdd:PRK05771 107 -EEISELENEIKELEQEIERLEpwgnfdLDL----SLLLGFKYVSvfVGTVPEDKLEELKLESDVENVeyistDKGYVYV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 495 ----KANKEHNERDLRDRLALSQDEISVLRTSSQRRSpctslpdNASAELNRLTSEADSLRcvlelkqAEISALSKAKAD 570
Cdd:PRK05771 182 vvvvLKELSDEVEEELKKLGFERLELEEEGTPSELIR-------EIKEELEEIEKERESLL-------EELKELAKKYLE 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 116007266 571 LIHESEErlKLSNRVALLEAQNEMLRTE----LEA--KTEKEKEIQQKMEELQKAYKY 622
Cdd:PRK05771 248 ELLALYE--YLEIELERAEALSKFLKTDktfaIEGwvPEDRVKKLKELIDKATGGSAY 303
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
347-590 |
2.19e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 347 DCERLREDLEDKgLEWIQRQQEK--EYLHRTE-LKQAEEKLMEVQLRAKLkFCELESQLRAKDEESKQAQEAYRMEVSH- 422
Cdd:PRK02224 472 EDRERVEELEAE-LEDLEEEVEEveERLERAEdLVEAEDRIERLEERRED-LEELIAERRETIEEKRERAEELRERAAEl 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 423 --KLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIHT--ARLAEANQREQDLIDRVKSLTkELNTLKANK 498
Cdd:PRK02224 550 eaEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTllAAIADAEDEIERLREKREALA-ELNDERRER 628
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 499 EHNERDLRDRLALSQDEiSVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLrcvlelkQAEISALSKAKADLIHESEER 578
Cdd:PRK02224 629 LAEKRERKRELEAEFDE-ARIEEAREDKERAEEYLEQVEEKLDELREERDDL-------QAEIGAVENELEELEELRERR 700
|
250
....*....|..
gi 116007266 579 LKLSNRVALLEA 590
Cdd:PRK02224 701 EALENRVEALEA 712
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
435-618 |
2.42e-04 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 45.02 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 435 EQKIQELQTRLQQVETEEQGHREELIRKENIHTaRLAEANQREQDL----IDRVKSLTKELNTLKANKEHNERDLRDRLA 510
Cdd:pfam05701 218 EQDKLNWEKELKQAEEELQRLNQQLLSAKDLKS-KLETASALLLDLkaelAAYMESKLKEEADGEGNEKKTSTSIQAALA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 511 LSQDEISVLRTSSqrrspctslpDNASAELNRLTSEADSLRcvlelkqaeiSALSKAKADLIHESEERLKLSNRVALLEA 590
Cdd:pfam05701 297 SAKKELEEVKANI----------EKAKDEVNCLRVAAASLR----------SELEKEKAELASLRQREGMASIAVSSLEA 356
|
170 180
....*....|....*....|....*...
gi 116007266 591 QNEMLRTELEAKTEKEKEIQQKMEELQK 618
Cdd:pfam05701 357 ELNRTKSEIALVQAKEKEAREKMVELPK 384
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
370-516 |
2.46e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 370 EYLHRTELKQAEEKLMEVQLRAKLKFCEL--ESQLRAKDEESKQAQEAYRmevshklalkqeHLRTAEQKIQELQTRLQQ 447
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIkkEALLEAKEEIHKLRNEFEK------------ELRERRNELQKLEKRLLQ 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116007266 448 veteeqghREELIRKenihtaRLAEANQREQDLIDRVKSLT---KELNTLKANKEHNERDLRDRL----ALSQDEI 516
Cdd:PRK12704 94 --------KEENLDR------KLELLEKREEELEKKEKELEqkqQELEKKEEELEELIEEQLQELerisGLTAEEA 155
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
314-631 |
3.64e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 314 ELDAVACKENKHQCARTK-GTLEKTILLLQHTQKDCERLREDLEDKGLEWIQRQQEK----EYLHRTELKQAEEKLMEVQ 388
Cdd:TIGR00606 246 ELDPLKNRLKEIEHNLSKiMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQlndlYHNHQRTVREKERELVDCQ 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 389 lraklKFCELESQLRAKDEESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHRE-------ELIR 461
Cdd:TIGR00606 326 -----RELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSErqiknfhTLVI 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 462 KENIHTARLAeaNQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQRRSpctslpdNASAELN 541
Cdd:TIGR00606 401 ERQEDEAKTA--AQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ-------QLEGSSD 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 542 RLTSEADSLRCVL-ELKQAEISALSKA-KADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKA 619
Cdd:TIGR00606 472 RILELDQELRKAErELSKAEKNSLTETlKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQI 551
|
330
....*....|..
gi 116007266 620 YKYESIKRTRLT 631
Cdd:TIGR00606 552 RKIKSRHSDELT 563
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
431-616 |
4.36e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 431 LRTAEQKIQELQTRLQQVETEEQGHREELIR-KENIHTAR--LAEANQ-REQDLIDRVKSLTKELNTLKANKEHNERDlR 506
Cdd:COG3096 838 LAALRQRRSELERELAQHRAQEQQLRQQLDQlKEQLQLLNklLPQANLlADETLADRLEELREELDAAQEAQAFIQQH-G 916
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 507 DRLALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQA-----------EISALS-KAKADLIHE 574
Cdd:COG3096 917 KALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHfsyedavgllgENSDLNeKLRARLEQA 996
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116007266 575 SEERLKLsnRVALLEAQNEM---------LRTELEAKTEKEKEIQQKMEEL 616
Cdd:COG3096 997 EEARREA--REQLRQAQAQYsqynqvlasLKSSRDAKQQTLQELEQELEEL 1045
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
335-658 |
5.51e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 5.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 335 EKTILLLQHTQKDCERLREDLEDKGLEwIQRQ-QEKEYLHRTELKQAEEKLMEVQlRAKLKFCELESQLRAKDEESKQAQ 413
Cdd:TIGR04523 334 NKIISQLNEQISQLKKELTNSESENSE-KQRElEEKQNEIEKLKKENQSYKQEIK-NLESQINDLESKIQNQEKLNQQKD 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 414 eayrmevshklalkqehlrtaeQKIQELQTRLQQVETEEQghreeLIRKENIhtarlaEANQREQDLIDRVKSLTKELNT 493
Cdd:TIGR04523 412 ----------------------EQIKKLQQEKELLEKEIE-----RLKETII------KNNSEIKDLTNQDSVKELIIKN 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 494 LKANKEHNERdlrdrlalsqdEISVLrtssqrrspctslpdnaSAELNRLTSEADSLRCVLELKQAEISALSKAKADLih 573
Cdd:TIGR04523 459 LDNTRESLET-----------QLKVL-----------------SRSINKIKQNLEQKQKELKSKEKELKKLNEEKKEL-- 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 574 eSEERLKLSNRVALLEAQNEMLRTEleaKTEKEKEIQQKMEELQK---AYKYESIKRTRLTYDKEELQYHLKQRSlqLQS 650
Cdd:TIGR04523 509 -EEKVKDLTKKISSLKEKIEKLESE---KKEKESKISDLEDELNKddfELKKENLEKEIDEKNKEIEELKQTQKS--LKK 582
|
....*...
gi 116007266 651 AESKLQDL 658
Cdd:TIGR04523 583 KQEEKQEL 590
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
333-689 |
6.39e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 6.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 333 TLEKTILLLQHTQKdcerlredledkglewiqrqqekeylhrtELKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQA 412
Cdd:pfam12128 252 TLESAELRLSHLHF-----------------------------GYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEK 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 413 QEAYRMEVS---HKLALKQEHLRTAE-QKIQELQTRLQQVETEEQghREELIRKEnihtarLAEANQREQDLIDRVKSLT 488
Cdd:pfam12128 303 RDELNGELSaadAAVAKDRSELEALEdQHGAFLDADIETAAADQE--QLPSWQSE------LENLEERLKALTGKHQDVT 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 489 KELNTLKAN-KEHNERDL---RDRLALSQDEISVLRT--SSQRRSPCTSLPDNASAELNRLTSEADSLrcvlelkqaeIS 562
Cdd:pfam12128 375 AKYNRRRSKiKEQNNRDIagiKDKLAKIREARDRQLAvaEDDLQALESELREQLEAGKLEFNEEEYRL----------KS 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 563 ALSKAK---ADLIHESEERLKLSNRVALLEAQNEmlrtELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQY 639
Cdd:pfam12128 445 RLGELKlrlNQATATPELLLQLENFDERIERARE----EQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 116007266 640 HLKQRSLQL-QSAESKLQDLSTGSHDNSLSSH---SRCSLGRSGLEIAVTTSSP 689
Cdd:pfam12128 521 ALDELELQLfPQAGTLLHFLRKEAPDWEQSIGkviSPELLHRTDLDPEVWDGSV 574
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
341-656 |
6.71e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 6.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 341 LQHTQKDCERLREDL--EDKGLEwIQRQQEKEYLHRTELKQAEEKLMEVQLraklkfCELESQLRAKdeeskqaqeayRM 418
Cdd:pfam15921 543 LRNVQTECEALKLQMaeKDKVIE-ILRQQIENMTQLVGQHGRTAGAMQVEK------AQLEKEINDR-----------RL 604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 419 EVSHKLALKQEHlrtaEQKIQELQTRLQQVETEeqghREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANK 498
Cdd:pfam15921 605 ELQEFKILKDKK----DAKIRELEARVSDLELE----KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY 676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 499 EHNERDLRDRLalSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLEL------KQAEISALsKAKADLI 572
Cdd:pfam15921 677 EVLKRNFRNKS--EEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMqkqitaKRGQIDAL-QSKIQFL 753
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 573 HES------------EERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAykyesikrtrltYDKEELQYH 640
Cdd:pfam15921 754 EEAmtnankekhflkEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVA------------LDKASLQFA 821
|
330
....*....|....*....
gi 116007266 641 LKQRSLQLQSAES---KLQ 656
Cdd:pfam15921 822 ECQDIIQRQEQESvrlKLQ 840
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
434-659 |
7.17e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 7.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 434 AEQKIQELQTRLQQVETEEQGHREELIRKENIHtARLAEANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALSQ 513
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKL-QELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 514 DEisvLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKAKADlihESEERLKLSNRVALLEAQNE 593
Cdd:pfam02463 244 EL---LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEE---LKSELLKLERRKVDDEEKLK 317
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116007266 594 MLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDLS 659
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES 383
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
270-657 |
7.23e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 7.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 270 KPFTENGELDCARLAKFFQDTQFERKEEQRQILGLSVMVQFMSKELDavackenKHQCARTKGTLEK------TILLLQH 343
Cdd:TIGR00618 141 KTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFA-------KKKSLHGKAELLTlrsqllTLCTPCM 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 344 TQKDCERLR--EDLEDKGLEWIQRQQEKEYLHRTELKQAEEKLMEVQ----LRAKLKfcELESQLRAKDEESK------- 410
Cdd:TIGR00618 214 PDTYHERKQvlEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQllkqLRARIE--ELRAQEAVLEETQErinrark 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 411 -------------------------QAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENI 465
Cdd:TIGR00618 292 aaplaahikavtqieqqaqrihtelQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIS 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 466 H-----TARLAEANQREQDLIDRVKSLTKELNTLKAN------KEHNERDLRDRLA-------LSQDEISVLRTSSQRRS 527
Cdd:TIGR00618 372 CqqhtlTQHIHTLQQQKTTLTQKLQSLCKELDILQREqatidtRTSAFRDLQGQLAhakkqqeLQQRYAELCAAAITCTA 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 528 PCTSLPDNASAELNRLTSEADSLRCVLE---LKQAEISALSKAKADLIHESEERLK------------------------ 580
Cdd:TIGR00618 452 QCEKLEKIHLQESAQSLKEREQQLQTKEqihLQETRKKAVVLARLLELQEEPCPLCgscihpnparqdidnpgpltrrmq 531
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116007266 581 -LSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQyHLKQRSLQLQSAESKLQD 657
Cdd:TIGR00618 532 rGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQ-NITVRLQDLTEKLSEAED 608
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
332-619 |
8.39e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 8.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 332 GTLEKTILLLQHTQKDCERLRE---------DLEDKG-LEWIQRQQEKEYLHRTELKQAEEKLMEVQL---RAKlKFCEL 398
Cdd:PRK02224 429 AELEATLRTARERVEEAEALLEagkcpecgqPVEGSPhVETIEEDRERVEELEAELEDLEEEVEEVEErleRAE-DLVEA 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 399 ESQLRAKDEESKQAQEayrmevshKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREElirkenihtarLAEANQREQ 478
Cdd:PRK02224 508 EDRIERLEERREDLEE--------LIAERRETIEEKRERAEELRERAAELEAEAEEKREA-----------AAEAEEEAE 568
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 479 DLIDRVKSLTKELNTLKankehNERDLRDRLALSQDEIsvlrtssqrrspctslpDNASAELNRLTSEADSLRCVLELKQ 558
Cdd:PRK02224 569 EAREEVAELNSKLAELK-----ERIESLERIRTLLAAI-----------------ADAEDEIERLREKREALAELNDERR 626
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116007266 559 AEISALSKAKADLIHESEErlklsNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKA 619
Cdd:PRK02224 627 ERLAEKRERKRELEAEFDE-----ARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAE 682
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
367-633 |
8.63e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.59 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 367 QEKEYLHRTELKQAEEKLMEVQ-----LRAKLKfcELESQLRAKDEESKQAQEAYRmEVSHKLALKQEHLRTAEQKIQEL 441
Cdd:COG1340 14 EEKIEELREEIEELKEKRDELNeelkeLAEKRD--ELNAQVKELREEAQELREKRD-ELNEKVKELKEERDELNEKLNEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 442 QTRLQQVETEeqgHREELIRKENIHT-----ARLAEANQ-------REQDLIDRVKSLTKELNTLKANKEHNErDLRDRL 509
Cdd:COG1340 91 REELDELRKE---LAELNKAGGSIDKlrkeiERLEWRQQtevlspeEEKELVEKIKELEKELEKAKKALEKNE-KLKELR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 510 ALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKaKADLIHesEERLKLSNRVALLE 589
Cdd:COG1340 167 AELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQE-KADELH--EEIIELQKELRELR 243
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 116007266 590 AQNEMLRTELEA--KTEKEKEIQQKMEELqkaykYESIKRT-RLTYD 633
Cdd:COG1340 244 KELKKLRKKQRAlkREKEKEELEEKAEEI-----FEKLKKGeKLTTE 285
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
341-657 |
1.05e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 341 LQHTQKDCERLREDLEdkglewiqrqqEKEYLHRT---ELKQAEEKLMEVQLRAKLkfcelesQLRAKDEESKQAQEAYR 417
Cdd:TIGR00606 753 LQKVNRDIQRLKNDIE-----------EQETLLGTimpEEESAKVCLTDVTIMERF-------QMELKDVERKIAQQAAK 814
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 418 M----------EVSHKLALKQEHLRTAEQKIQELQtRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSL 487
Cdd:TIGR00606 815 LqgsdldrtvqQVNQEKQEKQHELDTVVSKIELNR-KLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVEL 893
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 488 TKELNTL-KANKEHNERDLRDRLALSQD----EISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEIS 562
Cdd:TIGR00606 894 STEVQSLiREIKDAKEQDSPLETFLEKDqqekEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLK 973
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 563 ALSKAKADLIHESEERLKLSNRVallEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQyhlk 642
Cdd:TIGR00606 974 QKETELNTVNAQLEECEKHQEKI---NEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQ---- 1046
|
330
....*....|....*
gi 116007266 643 QRSLQLQSAESKLQD 657
Cdd:TIGR00606 1047 MQVLQMKQEHQKLEE 1061
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
320-638 |
1.17e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 320 CKENKHQCARTKGTLEKTILLLQHTQKDCERLREDLEDKGLEWIQRQQEKEYLHR--TELKQAEEKLMEvQLRAKLKFCE 397
Cdd:PRK02224 225 YEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEevRDLRERLEELEE-ERDDLLAEAG 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 398 LESQLRAKDEESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKEN-IHTARLAEANQR 476
Cdd:PRK02224 304 LDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESeLEEAREAVEDRR 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 477 EQ--DLIDRVKSLTKELNTLKANKEhnerDLRDRLALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVL 554
Cdd:PRK02224 384 EEieELEEEIEELRERFGDAPVDLG----NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 555 ELKQAEIsalskakADLIHESEERL-KLSNRVALLEAQNEMLR---TELEAKTEKEKEIQQKMEELQKAYKYESIKRTRL 630
Cdd:PRK02224 460 PVEGSPH-------VETIEEDRERVeELEAELEDLEEEVEEVEerlERAEDLVEAEDRIERLEERREDLEELIAERRETI 532
|
....*...
gi 116007266 631 TYDKEELQ 638
Cdd:PRK02224 533 EEKRERAE 540
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
217-658 |
1.27e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 217 QEQEASGQVKEATITTANEPNALSLPDEISNSVSSTTMlatprvDIAAQYPVLKPFTENGELDCARLAKFFQDTQFERKE 296
Cdd:pfam12128 271 ETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNG------ELSAADAAVAKDRSELEALEDQHGAFLDADIETAAA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 297 EQRQILGLSVMVQFMSKELDAVACKENKHQcartkgtlEKTILLLQHTQKDCERLREDLE---DKGLEWIQRQQEKEYLH 373
Cdd:pfam12128 345 DQEQLPSWQSELENLEERLKALTGKHQDVT--------AKYNRRRSKIKEQNNRDIAGIKdklAKIREARDRQLAVAEDD 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 374 RTELKQAEEKLMEVQLRaKLKFCELESQLRAKDEESKQAQEAYRMEVSHKLALKQ---EHLRTAEQKIQELQTRLQQVET 450
Cdd:pfam12128 417 LQALESELREQLEAGKL-EFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDeriERAREEQEAANAEVERLQSELR 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 451 EEQGHREELIRKENIHTARLAEANQR----EQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQrr 526
Cdd:pfam12128 496 QARKRRDQASEALRQASRRLEERQSAldelELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGS-- 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 527 spctslpdnASAELN----RLTSEADSLRCVLELKQAEISALSKAKADLIHESEerlklsnRVALLEAQNEMLRTELEak 602
Cdd:pfam12128 574 ---------VGGELNlygvKLDLKRIDVPEWAASEEELRERLDKAEEALQSARE-------KQAAAEEQLVQANGELE-- 635
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 116007266 603 tekekEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHL-KQRSLQLQSAESKLQDL 658
Cdd:pfam12128 636 -----KASREETFARTALKNARLDLRRLFDEKQSEKDKKnKALAERKDSANERLNSL 687
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
362-656 |
1.42e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 362 WIQRQQEKEYLHRTELKQAEEKLMEVQL--RAKLKFCELESQLrakdeESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQ 439
Cdd:TIGR00606 184 YIKALETLRQVRQTQGQKVQEHQMELKYlkQYKEKACEIRDQI-----TSKEAQLESSREIVKSYENELDPLKNRLKEIE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 440 ELQTRLQQVETEEQGHREELIRKENIHTarlaeanQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALSQDEISVL 519
Cdd:TIGR00606 259 HNLSKIMKLDNEIKALKSRKKQMEKDNS-------ELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 520 RTSSQrrspctslpdnasaELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLSN--RVALLEAQ-NEMLR 596
Cdd:TIGR00606 332 NKERR--------------LLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGfeRGPFSERQiKNFHT 397
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 597 TELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQ 656
Cdd:TIGR00606 398 LVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELK 457
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
349-658 |
1.65e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 349 ERLREDLEDKGLEWIQRQQEK-EYL---HRTELKQAEEKLMEVQLRAKlkfcELESQLRAKDEESKQAQEAYRME----- 419
Cdd:pfam15921 248 EALKSESQNKIELLLQQHQDRiEQLiseHEVEITGLTEKASSARSQAN----SIQSQLEIIQEQARNQNSMYMRQlsdle 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 420 --VSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREElirkenihtarLAEANQREQDLIDRVKSLTKELNT---- 493
Cdd:pfam15921 324 stVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTE-----------RDQFSQESGNLDDQLQKLLADLHKreke 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 494 LKANKEHNERdLRDRLALSQDEISVLRTssqrrspctslpdnasaELNRLTSEADSLRCVLELKQAEISALSKAKADLIH 573
Cdd:pfam15921 393 LSLEKEQNKR-LWDRDTGNSITIDHLRR-----------------ELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQ 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 574 ESEERL-KLSNRVALLEAQNEMLRTELEAKTEKEKEIQ-------------QKMEELQKAYKYESIK-RTRLTYDKEELQ 638
Cdd:pfam15921 455 GKNESLeKVSSLTAQLESTKEMLRKVVEELTAKKMTLEssertvsdltaslQEKERAIEATNAEITKlRSRVDLKLQELQ 534
|
330 340
....*....|....*....|
gi 116007266 639 yHLKQRSLQLQSAESKLQDL 658
Cdd:pfam15921 535 -HLKNEGDHLRNVQTECEAL 553
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
333-655 |
1.71e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.81 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 333 TLEKTILLLQHTQKDCERLREDLEDKGLEwIQRQQEKEYLHRTELKQAEEKLMevqlraklkfcELESQLRAKDEESKQA 412
Cdd:COG4372 32 QLRKALFELDKLQEELEQLREELEQAREE-LEQLEEELEQARSELEQLEEELE-----------ELNEQLQAAQAELAQA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 413 QEayrmevshKLALKQEHLRTAEQKIQELQTRLQQVETEEQ---GHREELIRKENIHTARLAEANQREQDLIDRVKSLTK 489
Cdd:COG4372 100 QE--------ELESLQEEAEELQEELEELQKERQDLEQQRKqleAQIAELQSEIAEREEELKELEEQLESLQEELAALEQ 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 490 ELNTLKanKEHNERDLRDRLALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKAKA 569
Cdd:COG4372 172 ELQALS--EAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKE 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 570 DLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQ 649
Cdd:COG4372 250 ELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLE 329
|
....*.
gi 116007266 650 SAESKL 655
Cdd:COG4372 330 LALAIL 335
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
349-656 |
2.35e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 349 ERLREDLEDKGLEwIQRQQEKEYLHRTELKQAEEKLMeVQLRAKLKFCELESQLRAKDEESKQAQEayrmEVSHKLALKQ 428
Cdd:pfam15921 415 DHLRRELDDRNME-VQRLEALLKAMKSECQGQMERQM-AAIQGKNESLEKVSSLTAQLESTKEMLR----KVVEELTAKK 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 429 EHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEAnQREQDLIDRVKSLTKELNTLKAnkEHNERDLRDR 508
Cdd:pfam15921 489 MTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQEL-QHLKNEGDHLRNVQTECEALKL--QMAEKDKVIE 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 509 LALSQDEISVLRTSSQRRSPCTSLPDNAS--AELNRLTSEADSLRCVLELKQAEISALSKAKADLIHEseerlklsnRVA 586
Cdd:pfam15921 566 ILRQQIENMTQLVGQHGRTAGAMQVEKAQleKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELE---------KVK 636
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 587 LLEAQNEMLRTEleaktekeKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQ 656
Cdd:pfam15921 637 LVNAGSERLRAV--------KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLK 698
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
369-659 |
2.39e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 369 KEYLHRTELKQAEEKLMEVQLRAKLKFCELESQLRAKD--EESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQ 446
Cdd:PRK03918 152 RQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTEniEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 447 QVETeeqgHREELIRKENihtarlaeanqreqdlidRVKSLTKELNTLKANKehneRDLRDRLALSQDEISVLRtsSQRR 526
Cdd:PRK03918 232 ELEE----LKEEIEELEK------------------ELESLEGSKRKLEEKI----RELEERIEELKKEIEELE--EKVK 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 527 spctslpdnasaELNRLTSEADSLRcvlelkqaEISALSKAKADLIHESEERL-KLSNRVALLEAQNEmlrtELEAKTEK 605
Cdd:PRK03918 284 ------------ELKELKEKAEEYI--------KLSEFYEEYLDELREIEKRLsRLEEEINGIEERIK----ELEEKEER 339
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 116007266 606 EKEIQQKMEELQKayKYESIKRTRLTYDKeelqyhLKQRSLQLQSAESKLQDLS 659
Cdd:PRK03918 340 LEELKKKLKELEK--RLEELEERHELYEE------AKAKKEELERLKKRLTGLT 385
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
403-660 |
3.26e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 41.28 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 403 RAKDEESKQAQEAY-RMEVSHKLALKQEHLRTAEQKIQELQTRlQQVETEEQGHREELIRKE--------NIHTARLAEA 473
Cdd:pfam09731 114 EAKAQLPKSEQEKEkALEEVLKEAISKAESATAVAKEAKDDAI-QAVKAHTDSLKEASDTAEisrekatdSALQKAEALA 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 474 NQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRL-------------ALSQDEISVLRTSS--QRRSPCTSLPDNASA 538
Cdd:pfam09731 193 EKLKEVINLAKQSEEEAAPPLLDAAPETPPKLPEHLdnveekvekaqslAKLVDQYKELVASEriVFQQELVSIFPDIIP 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 539 ELNRLT-SEADSLRCVLELKQAEISALSKAKADLIHESEERLK--LSNRVALLEAQNEMLRTELEAKTEKEK-----EIQ 610
Cdd:pfam09731 273 VLKEDNlLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIEraLEKQKEELDKLAEELSARLEEVRAADEaqlrlEFE 352
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 116007266 611 QKMEELQKayKYESIKRTRLTYDKEELQYHLKQRsLQLQSAESK---LQDLST 660
Cdd:pfam09731 353 REREEIRE--SYEEKLRTELERQAEAHEEHLKDV-LVEQEIELQrefLQDIKE 402
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
313-612 |
3.36e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 40.82 E-value: 3.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 313 KELDAVACKENKHQCARTKGTLEKtilLLQHTQ---------KDCERLREDLEDKGLEWIQRQQEKEYLH------RTEL 377
Cdd:pfam15742 47 KQHNSLLQEENIKIKAELKQAQQK---LLDSTKmcssltaewKHCQQKIRELELEVLKQAQSIKSQNSLQeklaqeKSRV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 378 KQAEEKLMEVQ--LRAKLKFCELESQLRAKD---EESKQAQEayrmevshklalKQEHLRTAEQKIQELQTRLQQVETEE 452
Cdd:pfam15742 124 ADAEEKILELQqkLEHAHKVCLTDTCILEKKqleERIKEASE------------NEAKLKQQYQEEQQKRKLLDQNVNEL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 453 QGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEHNeRDLRDRLALSQDEISVLRTssqrrspctsl 532
Cdd:pfam15742 192 QQQVRSLQDKEAQLEMTNSQQQLRIQQQEAQLKQLENEKRKSDEHLKSN-QELSEKLSSLQQEKEALQE----------- 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 533 pdnasaELNRLTSEADSLRCVLELKQAEISA-LSKAKADLIHESEERLKlsnRVALLEAQNEMLRTeleaKTEKEKEIQQ 611
Cdd:pfam15742 260 ------ELQQVLKQLDVHVRKYNEKHHHHKAkLRRAKDRLVHEVEQRDE---RIKQLENEIGILQQ----QSEKEKAFQK 326
|
.
gi 116007266 612 K 612
Cdd:pfam15742 327 Q 327
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
401-658 |
4.15e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 4.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 401 QLRAKDEESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKEnihtARLAEANQREQDL 480
Cdd:COG4372 3 RLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLE----EELEQARSELEQL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 481 IDRVKSLTKELNTLKANKEhnerDLRDRLALSQDEISVLRTSSQRRSpctSLPDNASAELNRLTSEADSLRCVLELKQAE 560
Cdd:COG4372 79 EEELEELNEQLQAAQAELA----QAQEELESLQEEAEELQEELEELQ---KERQDLEQQRKQLEAQIAELQSEIAEREEE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 561 ISALSKAKADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYH 640
Cdd:COG4372 152 LKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKL 231
|
250
....*....|....*...
gi 116007266 641 LKQRSLQLQSAESKLQDL 658
Cdd:COG4372 232 GLALSALLDALELEEDKE 249
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
349-513 |
6.56e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 349 ERLREDLEDKGLEWIQRQQEKEYLH--RTELKQAEEKLMEVQLRAKLKFcelESQLRAKDEESKQAQEAYRMEVsHKLAL 426
Cdd:TIGR00618 704 TLLRELETHIEEYDREFNEIENASSslGSDLAAREDALNQSLKELMHQA---RTVLKARTEAHFNNNEEVTAAL-QTGAE 779
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 427 KQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEHNERDLR 506
Cdd:TIGR00618 780 LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSK 859
|
....*..
gi 116007266 507 DRLALSQ 513
Cdd:TIGR00618 860 QLAQLTQ 866
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
376-654 |
6.75e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 376 ELKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQAQEAYRMEVSHK-----LALKQEHLRTAEQKIQELQTRLQQVET 450
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAkkaaeAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 451 EEQGHREELIRK--ENIHTA----RLAEANQREQDLIDRVKSLTKELNTLKANKEHNER-DLRDRLALSQDEISVLRTSS 523
Cdd:PTZ00121 1374 EEAKKKADAAKKkaEEKKKAdeakKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKaDEAKKKAEEAKKADEAKKKA 1453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 524 QRRSPCTSLPDNA--SAELNRLTSEADSLRCVLELKQAEISAlsKAKADLIHESEERLKLSNRVALLEAQ---NEMLRTE 598
Cdd:PTZ00121 1454 EEAKKAEEAKKKAeeAKKADEAKKKAEEAKKADEAKKKAEEA--KKKADEAKKAAEAKKKADEAKKAEEAkkaDEAKKAE 1531
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116007266 599 LEAKTE--KEKEIQQKMEELQKA---YKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESK 654
Cdd:PTZ00121 1532 EAKKADeaKKAEEKKKADELKKAeelKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
281-491 |
7.00e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 281 ARLAKFFQDTQFERKEEQRQILGLSVMVQFMSKELdavacKENKHQCARTKGTLEKTILLLQHTQKDCERLREDLEDKgL 360
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRI-----RALEQELAALEAELAELEKEIAELRAELEAQKEELAEL-L 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 361 EWIQRQQEKEY----LHRTELKQAEEKLMEVQlraklkfcELESQLRAKDEESKQAQEAYRmEVSHKLALKQEHLRTAEQ 436
Cdd:COG4942 111 RALYRLGRQPPlallLSPEDFLDAVRRLQYLK--------YLAPARREQAEELRADLAELA-ALRAELEAERAELEALLA 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 116007266 437 KIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKEL 491
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
263-658 |
7.78e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 7.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 263 AAQYPVLKPFTENGELDCARLAKFFQDTQFERKEEQRQILGLSvmvqfmSKELDAVACKENKHQCARTKGTLEKTILLLQ 342
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE------EKEERLEELKKKLKELEKRLEELEERHELYE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 343 HT---QKDCERLREDLEDKGLEWIQRQQEKEYLHRTELKQAEEKLMEVQLRAKLKFCELESQL----RAK---------- 405
Cdd:PRK03918 366 EAkakKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIeelkKAKgkcpvcgrel 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 406 -DEESKQAQEAYRMEVSHKLALKQEhlrtAEQKIQELQTRLQQVETEEQGHREELirkenihtarlaeanqREQDLIDRV 484
Cdd:PRK03918 446 tEEHRKELLEEYTAELKRIEKELKE----IEEKERKLRKELRELEKVLKKESELI----------------KLKELAEQL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 485 KSLTKELNtlKANKEHNERD------LRDRLALSQDEISVLRTSSQRRSPCTSLP-------DNASAELNRLTSEADSL- 550
Cdd:PRK03918 506 KELEEKLK--KYNLEELEKKaeeyekLKEKLIKLKGEIKSLKKELEKLEELKKKLaelekklDELEEELAELLKELEELg 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 551 -RCVLELKQaEISALSKAKADLI------HESEERLKlsnRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYE 623
Cdd:PRK03918 584 fESVEELEE-RLKELEPFYNEYLelkdaeKELEREEK---ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE 659
|
410 420 430
....*....|....*....|....*....|....*
gi 116007266 624 SIKRTRLTYdkEELQYHLKQRSLQLQSAESKLQDL 658
Cdd:PRK03918 660 EYEELREEY--LELSRELAGLRAELEELEKRREEI 692
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
349-494 |
8.18e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.92 E-value: 8.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 349 ERLREDLEDKGLEWIQRQQEKEYLHRTELKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQAQEAYRMEVSHKLALKQ 428
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116007266 429 EHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLID---------RVKSLTKELNTL 494
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdleelerELERLEREIEAL 779
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
364-656 |
9.32e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 39.77 E-value: 9.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 364 QRQQEKEYLHRT---ELKQAEEKLMEVQLRAKLKFCELESQL------RAKDEESKQAQEAYRMEVSHKLALKQ------ 428
Cdd:pfam01576 324 KREQEVTELKKAleeETRSHEAQLQEMRQKHTQALEELTEQLeqakrnKANLEKAKQALESENAELQAELRTLQqakqds 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 429 EHLRT-AEQKIQELQTRLQQVETeeqgHREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLkankehnERDLRD 507
Cdd:pfam01576 404 EHKRKkLEGQLQELQARLSESER----QRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL-------ESQLQD 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 508 RLALSQDEI-SVLRTSSQRRSpctsLPDNASAELNRLTSEADSLRCVlelkQAEISALSKAKADLIHESEErlkLSNRVA 586
Cdd:pfam01576 473 TQELLQEETrQKLNLSTRLRQ----LEDERNSLQEQLEEEEEAKRNV----ERQLSTLQAQLSDMKKKLEE---DAGTLE 541
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007266 587 LLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAykyesikRTRLTYDKEELQYHLKQRSlQLQSAESKLQ 656
Cdd:pfam01576 542 ALEEGKKRLQRELEALTQQLEEKAAAYDKLEKT-------KNRLQQELDDLLVDLDHQR-QLVSNLEKKQ 603
|
|
| |
