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Conserved domains on  [gi|124248516|ref|NP_001035965|]
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neutrophil defensin 1 isoform 2 preproprotein [Homo sapiens]

Protein Classification

Defensin_propep and Defensin_1 domain-containing protein( domain architecture ID 10467842)

Defensin_propep and Defensin_1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Defensin_propep pfam00879
Defensin propeptide;
1-52 1.35e-21

Defensin propeptide;


:

Pssm-ID: 459976  Cd Length: 51  Bit Score: 79.58  E-value: 1.35e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 124248516   1 MRTLAILAAILLVALQAQAEPLQARADEvAAAPEQIAADIPEVVVSLAWDES 52
Cdd:pfam00879  1 MRTLALLAAILLVALQAQAEPLQARADE-APDQEQPGAEDQDVSISFAGDES 51
Defensin_1 pfam00323
Mammalian defensin;
66-94 5.16e-12

Mammalian defensin;


:

Pssm-ID: 425607  Cd Length: 29  Bit Score: 54.91  E-value: 5.16e-12
                         10        20
                 ....*....|....*....|....*....
gi 124248516  66 CYCRIPACIAGERRYGTCIYQGRLWAFCC 94
Cdd:pfam00323  1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
 
Name Accession Description Interval E-value
Defensin_propep pfam00879
Defensin propeptide;
1-52 1.35e-21

Defensin propeptide;


Pssm-ID: 459976  Cd Length: 51  Bit Score: 79.58  E-value: 1.35e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 124248516   1 MRTLAILAAILLVALQAQAEPLQARADEvAAAPEQIAADIPEVVVSLAWDES 52
Cdd:pfam00879  1 MRTLALLAAILLVALQAQAEPLQARADE-APDQEQPGAEDQDVSISFAGDES 51
Defensin_1 pfam00323
Mammalian defensin;
66-94 5.16e-12

Mammalian defensin;


Pssm-ID: 425607  Cd Length: 29  Bit Score: 54.91  E-value: 5.16e-12
                         10        20
                 ....*....|....*....|....*....
gi 124248516  66 CYCRIPACIAGERRYGTCIYQGRLWAFCC 94
Cdd:pfam00323  1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
DEFSN smart00048
Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped ...
 66-94 4.30e-09

Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped viruses by forming multimeric membrane-spanning channels.


Pssm-ID: 128363  Cd Length: 29  Bit Score: 47.33  E-value: 4.30e-09
                          10        20
                  ....*....|....*....|....*....
gi 124248516   66 CYCRIPACIAGERRYGTCIYQGRLWAFCC 94
Cdd:smart00048  1 CYCRRRRCPRRERRIGTCRIRGRRYTFCC 29
 
Name Accession Description Interval E-value
Defensin_propep pfam00879
Defensin propeptide;
1-52 1.35e-21

Defensin propeptide;


Pssm-ID: 459976  Cd Length: 51  Bit Score: 79.58  E-value: 1.35e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 124248516   1 MRTLAILAAILLVALQAQAEPLQARADEvAAAPEQIAADIPEVVVSLAWDES 52
Cdd:pfam00879  1 MRTLALLAAILLVALQAQAEPLQARADE-APDQEQPGAEDQDVSISFAGDES 51
Defensin_1 pfam00323
Mammalian defensin;
66-94 5.16e-12

Mammalian defensin;


Pssm-ID: 425607  Cd Length: 29  Bit Score: 54.91  E-value: 5.16e-12
                         10        20
                 ....*....|....*....|....*....
gi 124248516  66 CYCRIPACIAGERRYGTCIYQGRLWAFCC 94
Cdd:pfam00323  1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
DEFSN smart00048
Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped ...
 66-94 4.30e-09

Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped viruses by forming multimeric membrane-spanning channels.


Pssm-ID: 128363  Cd Length: 29  Bit Score: 47.33  E-value: 4.30e-09
                          10        20
                  ....*....|....*....|....*....
gi 124248516   66 CYCRIPACIAGERRYGTCIYQGRLWAFCC 94
Cdd:smart00048  1 CYCRRRRCPRRERRIGTCRIRGRRYTFCC 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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