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Conserved domains on  [gi|79329854|ref|NP_001032007|]
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Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 11455410)

WD40 repeat domain-containing protein similar to proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
PubMed:  10322433|8090199
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
111-253 1.46e-23

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 103.84  E-value: 1.46e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 111 AAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPhHSEIVASGSLDLEVRLWNTTTSECIRS-HLF 189
Cdd:COG2319 167 SVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLATGKLLRTlTGH 245

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 79329854 190 YRPIASIAFHAEGELLAVASG-HKLHMWhynRRGEGSSPTVVLKTRRSLRAVHFHPHGApLLLTA 253
Cdd:COG2319 246 SGSVRSVAFSPDGRLLASGSAdGTVRLW---DLATGELLRTLTGHSGGVNSVAFSPDGK-LLASG 306
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
111-253 1.46e-23

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 103.84  E-value: 1.46e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 111 AAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPhHSEIVASGSLDLEVRLWNTTTSECIRS-HLF 189
Cdd:COG2319 167 SVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLATGKLLRTlTGH 245

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 79329854 190 YRPIASIAFHAEGELLAVASG-HKLHMWhynRRGEGSSPTVVLKTRRSLRAVHFHPHGApLLLTA 253
Cdd:COG2319 246 SGSVRSVAFSPDGRLLASGSAdGTVRLW---DLATGELLRTLTGHSGGVNSVAFSPDGK-LLASG 306
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 113-210 1.42e-18

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 86.62  E-value: 1.42e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 113 AFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPhHSEIVASGSLDLEVRLWNTTTSECIRSHL-FYR 191
Cdd:cd00200 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTgHTG 178

                        90
                ....*....|....*....
gi 79329854 192 PIASIAFHAEGELLAVASG 210
Cdd:cd00200 179 EVNSVAFSPDGEKLLSSSS 197
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 137-177 5.11e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 40.76  E-value: 5.11e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 79329854    137 TGNCLKVLTGHRRTPWVVRFHPHHSeIVASGSLDLEVRLWN 177
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
138-177 6.12e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 37.71  E-value: 6.12e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 79329854   138 GNCLKVLTGHRRTPWVVRFHPHHSeIVASGSLDLEVRLWN 177
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGK-LLASGSDDGTVKVWD 39
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
111-253 1.46e-23

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 103.84  E-value: 1.46e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 111 AAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPhHSEIVASGSLDLEVRLWNTTTSECIRS-HLF 189
Cdd:COG2319 167 SVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLATGKLLRTlTGH 245

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 79329854 190 YRPIASIAFHAEGELLAVASG-HKLHMWhynRRGEGSSPTVVLKTRRSLRAVHFHPHGApLLLTA 253
Cdd:COG2319 246 SGSVRSVAFSPDGRLLASGSAdGTVRLW---DLATGELLRTLTGHSGGVNSVAFSPDGK-LLASG 306
WD40 COG2319
WD40 repeat [General function prediction only];
101-253 1.09e-20

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 94.98  E-value: 1.09e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 101 PLGAPPRSTIAAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPhHSEIVASGSLDLEVRLWNTTT 180
Cdd:COG2319 115 TLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSP-DGKLLASGSDDGTVRLWDLAT 193

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 79329854 181 SECIRS---HLfyRPIASIAFHAEGELLAVASG-HKLHMWHYNRRGEGSSPTvvlKTRRSLRAVHFHPHGaPLLLTA 253
Cdd:COG2319 194 GKLLRTltgHT--GAVRSVAFSPDGKLLASGSAdGTVRLWDLATGKLLRTLT---GHSGSVRSVAFSPDG-RLLASG 264
WD40 COG2319
WD40 repeat [General function prediction only];
101-210 2.00e-20

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 94.21  E-value: 2.00e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 101 PLGAPPRSTIAAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPhHSEIVASGSLDLEVRLWNTTT 180
Cdd:COG2319 283 TLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-DGKTLASGSDDGTVRLWDLAT 361

                        90       100       110
                ....*....|....*....|....*....|...
gi 79329854 181 SECIRS---HlfYRPIASIAFHAEGELLAVASG 210
Cdd:COG2319 362 GELLRTltgH--TGAVTSVAFSPDGRTLASGSA 392
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 113-210 1.42e-18

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 86.62  E-value: 1.42e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 113 AFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPhHSEIVASGSLDLEVRLWNTTTSECIRSHL-FYR 191
Cdd:cd00200 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTgHTG 178

                        90
                ....*....|....*....
gi 79329854 192 PIASIAFHAEGELLAVASG 210
Cdd:cd00200 179 EVNSVAFSPDGEKLLSSSS 197
WD40 COG2319
WD40 repeat [General function prediction only];
101-246 2.48e-17

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 84.96  E-value: 2.48e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 101 PLGAPPRSTIAAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPhHSEIVASGSLDLEVRLWNTTT 180
Cdd:COG2319  73 TLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSP-DGKTLASGSADGTVRLWDLAT 151

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 181 SECIRS---HLfyRPIASIAFHAEGELLAVASG-HKLHMWHynrRGEGSSPTVVLKTRRSLRAVHFHPHG 246
Cdd:COG2319 152 GKLLRTltgHS--GAVTSVAFSPDGKLLASGSDdGTVRLWD---LATGKLLRTLTGHTGAVRSVAFSPDG 216
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 111-246 6.81e-17

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 81.61  E-value: 6.81e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 111 AAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPHHSEIvASGSLDLEVRLWNTTTSECIRS---H 187
Cdd:cd00200  14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL-ASGSSDKTIRLWDLETGECVRTltgH 92

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79329854 188 LFYrpIASIAFHAEGELLAVASGHK-LHMWHynrrGEGSSPTVVLKT-RRSLRAVHFHPHG 246
Cdd:cd00200  93 TSY--VSSVAFSPDGRILSSSSRDKtIKVWD----VETGKCLTTLRGhTDWVNSVAFSPDG 147
WD40 COG2319
WD40 repeat [General function prediction only];
111-180 2.23e-14

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 75.72  E-value: 2.23e-14
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 111 AAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPHhSEIVASGSLDLEVRLWNTTT 180
Cdd:COG2319 335 SVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPD-GRTLASGSADGTVRLWDLAT 403
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 111-216 2.94e-14

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 73.91  E-value: 2.94e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 111 AAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPhHSEIVASGSLDLEVRLWNTTTSEC---IRSH 187
Cdd:cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECvqtLSGH 260

                        90       100       110
                ....*....|....*....|....*....|
gi 79329854 188 LfyRPIASIAFHAEGELLAVASG-HKLHMW 216
Cdd:cd00200 261 T--NSVTSLAWSPDGKRLASGSAdGTIRIW 288
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 111-177 1.82e-09

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 59.66  E-value: 1.82e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 79329854 111 AAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPHHSeIVASGSLDLEVRLWN 177
Cdd:cd00200 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 140-253 6.07e-06

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 48.49  E-value: 6.07e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 140 CLKVLTGHRRTPWVVRFHPHhSEIVASGSLDLEVRLWNTTTSECIRS---HlfYRPIASIAFHAEGELLAVASG-HKLHM 215
Cdd:cd00200   1 LRRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTlkgH--TGPVRDVAASADGTYLASGSSdKTIRL 77

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 79329854 216 WhynrRGEGSSPTVVLKTRRS-LRAVHFHPHGaPLLLTA 253
Cdd:cd00200  78 W----DLETGECVRTLTGHTSyVSSVAFSPDG-RILSSS 111
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 137-177 5.11e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 40.76  E-value: 5.11e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 79329854    137 TGNCLKVLTGHRRTPWVVRFHPHHSeIVASGSLDLEVRLWN 177
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
138-177 6.12e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 37.71  E-value: 6.12e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 79329854   138 GNCLKVLTGHRRTPWVVRFHPHHSeIVASGSLDLEVRLWN 177
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGK-LLASGSDDGTVKVWD 39
Nsa1_WDR74-like cd22850
Ribosome biogenesis protein Nsa1 and similar proteins; Ribosome biogenesis protein Nsa1 ...
 115-190 6.46e-03

Ribosome biogenesis protein Nsa1 and similar proteins; Ribosome biogenesis protein Nsa1 (Nop7-associated 1) from fungi and WDR74 (WD repeat-containing protein 74) from mammals and plants, are homologous essential factors for ribosome assembly. In cooperation with the assembly factor Rix7/NVL2, Nsa1/WDR74 participates in an early cleavage of the pre-rRNA processing pathway. Rix7/NVL2 is a type II double ring, AAA-ATPase, that may mediate the release of Nsa1/WDR74 from nucleolar pre-60S particles. Nsa1/WDR74 contains an N-terminal seven-bladed beta-propeller WD40 domain that associates with the D1-AAA domain of the AAA-ATPase Rix7/NVL2, and a flexible lysine-rich C-terminus that extends outward from the WD40 domain, and is required for nucleolar localization.


Pssm-ID: 439302 [Multi-domain]  Cd Length: 333  Bit Score: 39.54  E-value: 6.46e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79329854 115 STDGRTL--ASTHGDH------TVKIIDCETGNCLKVLTGhrrtpwVVRFHPHHSEIVASGSLDLEVRLWNTTTSECIrS 186
Cdd:cd22850 241 DLDGHTVyvGDTSGDLalidirTGKLLGRLLGKYGGSITG------AVRHPELFDPYLASGGLDRYLRVFDIETRELL-A 313


                ....
gi 79329854 187 HLFY 190
Cdd:cd22850 314 KVYL 317
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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