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Conserved domains on  [gi|79328611|ref|NP_001031935|]
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FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

Protein Classification

NAD(P)-dependent oxidoreductase( domain architecture ID 11477344)

NAD(P)-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02985 PLN02985
squalene monooxygenase
 3-490 0e+00

squalene monooxygenase


:

Pssm-ID: 178566 [Multi-domain]  Cd Length: 514  Bit Score: 1020.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611    3 FTNVCLWTLLAFMLTWTVFYVTNRGKKATQLADAVVEEREDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE 82
Cdd:PLN02985   1 FTHVCLWTLLAFVLTWTVFYVTNRKKKATELADAVAEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   83 RIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSL 162
Cdd:PLN02985  81 RMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  163 PNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPEK 242
Cdd:PLN02985 161 PNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEPEK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  243 LKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPSISNGEMATFVKNTIAPQVPLKLRKIFLKGIDEGEHIKAMPTKKMTA 322
Cdd:PLN02985 241 LHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  323 TLSEKKGVILLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQV 402
Cdd:PLN02985 321 TLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQV 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  403 LVASTDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLF---- 478
Cdd:PLN02985 401 LVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFglal 480

                        490       500
                 ....*....|....*....|.
gi 79328611  479 ---------VGYENVGSPSQG 490
Cdd:PLN02985 481 kmlvphlkaEGVSQMLFPANA 501
 
Name Accession Description Interval E-value
PLN02985 PLN02985
squalene monooxygenase
 3-490 0e+00

squalene monooxygenase


Pssm-ID: 178566 [Multi-domain]  Cd Length: 514  Bit Score: 1020.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611    3 FTNVCLWTLLAFMLTWTVFYVTNRGKKATQLADAVVEEREDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE 82
Cdd:PLN02985   1 FTHVCLWTLLAFVLTWTVFYVTNRKKKATELADAVAEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   83 RIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSL 162
Cdd:PLN02985  81 RMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  163 PNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPEK 242
Cdd:PLN02985 161 PNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEPEK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  243 LKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPSISNGEMATFVKNTIAPQVPLKLRKIFLKGIDEGEHIKAMPTKKMTA 322
Cdd:PLN02985 241 LHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  323 TLSEKKGVILLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQV 402
Cdd:PLN02985 321 TLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQV 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  403 LVASTDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLF---- 478
Cdd:PLN02985 401 LVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFglal 480

                        490       500
                 ....*....|....*....|.
gi 79328611  479 ---------VGYENVGSPSQG 490
Cdd:PLN02985 481 kmlvphlkaEGVSQMLFPANA 501
SE pfam08491
Squalene epoxidase; This domain is found in squalene epoxidase (SE) and related proteins which ...
 199-472 3.50e-150

Squalene epoxidase; This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.


Pssm-ID: 400679  Cd Length: 276  Bit Score: 429.44  E-value: 3.50e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   199 APLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPEKLKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPSIS 278
Cdd:pfam08491   2 APLTIVCDGCFSKFRKSLSDNKPEVGSYFVGLILKNADLPAPNHGHVILGKPSPVLLYQISSTETRILCDYPGPKLPSIA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   279 NGEMATFVKNTIAPQVPLKLRKIFLKGIDEGeHIKAMPTKKMTATLSEKKGVILLGDAFNMRHPAIASGMMVLLSDILIL 358
Cdd:pfam08491  82 NGELKEYLKKSVAPQIPKELRPSFLAALEEG-KIRSMPNSFLPASKNRKKGLILLGDALNMRHPLTGGGMTVGLNDIVLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   359 RRLLQPLSNLGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKeAMRQGCYDYLSSGGFRTSGMMALLGG 438
Cdd:pfam08491 161 RKLLGPLRDLSDREKVSKVLKSFHWKRKPYDAVINTLSIALYSLFAADSDELK-ALRKGCFDYFKLGGDCVSGPVALLSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 79328611   439 MNPRPISLIYHLCAITLSSIGHLLSPFP---SPLRIW 472
Cdd:pfam08491 240 LLPRPLLLFGHFFAVALYSIYQNFIPRPilgSPLALL 276
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 46-216 2.33e-18

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 85.76  E-value: 2.33e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  46 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIdAQKATGMTVY--KDG 123
Cdd:COG0654   4 TDVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALSPRSLELLRRLGLWDRLLAR-GAPIRGIRVRdgSDG 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611 124 KEaVASFPVDNNNFPFdpsARSFHNGRFVQRLRQKASSLpNVRLEEGT-VKSLI-EEKGVikGVTYKNsaGEETTalAPL 201
Cdd:COG0654  83 RV-LARFDAAETGLPA---GLVVPRADLERALLEAARAL-GVELRFGTeVTGLEqDADGV--TVTLAD--GRTLR--ADL 151

                       170
                ....*....|....*
gi 79328611 202 TVVCDGCYSNLRRSL 216
Cdd:COG0654 152 VVGADGARSAVRRLL 166
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 47-216 1.04e-06

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 50.40  E-value: 1.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611    47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDlREP-ERIMGEFMQPGGrlmLSKLGLEDCLEGIDAQKAT----GMTVYK 121
Cdd:TIGR02032   2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKK-SFPrYKPCGGALSPRA---LEELDLPGELIVNLVRGARffspNGDSVE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   122 DGKEAVASFPVDNNNFpfdpsarsfhnGRFVQRLRQKASSlpNVRLEEgTVKSLIEEKGVIkGVTYknsAGEETTALAPL 201
Cdd:TIGR02032  78 IPIETELAYVIDRDAF-----------DEQLAERAQEAGA--ELRLGT-RVLDVEIHDDRV-VVIV---RGSEGTVTAKI 139

                         170
                  ....*....|....*
gi 79328611   202 TVVCDGCYSNLRRSL 216
Cdd:TIGR02032 140 VIGADGSRSIVAKKL 154
 
Name Accession Description Interval E-value
PLN02985 PLN02985
squalene monooxygenase
 3-490 0e+00

squalene monooxygenase


Pssm-ID: 178566 [Multi-domain]  Cd Length: 514  Bit Score: 1020.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611    3 FTNVCLWTLLAFMLTWTVFYVTNRGKKATQLADAVVEEREDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE 82
Cdd:PLN02985   1 FTHVCLWTLLAFVLTWTVFYVTNRKKKATELADAVAEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   83 RIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSL 162
Cdd:PLN02985  81 RMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  163 PNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPEK 242
Cdd:PLN02985 161 PNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEPEK 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  243 LKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPSISNGEMATFVKNTIAPQVPLKLRKIFLKGIDEGEHIKAMPTKKMTA 322
Cdd:PLN02985 241 LHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  323 TLSEKKGVILLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQV 402
Cdd:PLN02985 321 TLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQV 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  403 LVASTDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLF---- 478
Cdd:PLN02985 401 LVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFglal 480

                        490       500
                 ....*....|....*....|.
gi 79328611  479 ---------VGYENVGSPSQG 490
Cdd:PLN02985 481 kmlvphlkaEGVSQMLFPANA 501
SE pfam08491
Squalene epoxidase; This domain is found in squalene epoxidase (SE) and related proteins which ...
 199-472 3.50e-150

Squalene epoxidase; This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.


Pssm-ID: 400679  Cd Length: 276  Bit Score: 429.44  E-value: 3.50e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   199 APLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPEKLKLIMSKPSFTMLYQISSTDVRCVFEVLPNNIPSIS 278
Cdd:pfam08491   2 APLTIVCDGCFSKFRKSLSDNKPEVGSYFVGLILKNADLPAPNHGHVILGKPSPVLLYQISSTETRILCDYPGPKLPSIA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   279 NGEMATFVKNTIAPQVPLKLRKIFLKGIDEGeHIKAMPTKKMTATLSEKKGVILLGDAFNMRHPAIASGMMVLLSDILIL 358
Cdd:pfam08491  82 NGELKEYLKKSVAPQIPKELRPSFLAALEEG-KIRSMPNSFLPASKNRKKGLILLGDALNMRHPLTGGGMTVGLNDIVLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   359 RRLLQPLSNLGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKeAMRQGCYDYLSSGGFRTSGMMALLGG 438
Cdd:pfam08491 161 RKLLGPLRDLSDREKVSKVLKSFHWKRKPYDAVINTLSIALYSLFAADSDELK-ALRKGCFDYFKLGGDCVSGPVALLSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 79328611   439 MNPRPISLIYHLCAITLSSIGHLLSPFP---SPLRIW 472
Cdd:pfam08491 240 LLPRPLLLFGHFFAVALYSIYQNFIPRPilgSPLALL 276
PTZ00367 PTZ00367
squalene epoxidase; Provisional
 47-487 1.59e-97

squalene epoxidase; Provisional


Pssm-ID: 240384 [Multi-domain]  Cd Length: 567  Bit Score: 305.24  E-value: 1.59e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDLR-EPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKE 125
Cdd:PTZ00367  35 DVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFsKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDHKGKQ 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  126 AvasfpvdnnNFPFDP--SARSFHNGRFVQRLRQKA--SSLPNVRLEEGTVKSLIEEKGV----IKGVTYKNSAGEET-- 195
Cdd:PTZ00367 115 V---------KLPYGAgaSGVSFHFGDFVQNLRSHVfhNCQDNVTMLEGTVNSLLEEGPGfserAYGVEYTEAEKYDVpe 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  196 -------------------TALAPLTVVCDGCYSNLRRSLN--DNNAEVLSYQVGFISKNCQLEEPEKLKLIMSKPSFTM 254
Cdd:PTZ00367 186 npfredppsanpsattvrkVATAPLVVMCDGGMSKFKSRYQhyTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPIL 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  255 LYQISSTDVRCVFEVLPNNIPSISngEMATFVKNTIAPQVPLKLRKIFLKGIDEGEHIKAMPTKKMTATLSEKKGVILLG 334
Cdd:PTZ00367 266 SYRLDDNELRVLVDYNKPTLPSLE--EQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIG 343

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  335 DAFNMRHPAIASGMMVLLSDILIL-RRLLQPLSNLGNAQ--------KISQVIKSFYDIRKPMSATVNTLGNAFSQVLva 405
Cdd:PTZ00367 344 DHANQRHPLTGGGMTCCFSDCIRLaKSLTGIKSLRSIDQnemaeiedAIQAAILSYARNRKTHASTINILSWALYSVF-- 421

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  406 stdeAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSP--------------------- 464
Cdd:PTZ00367 422 ----SSPALRDACLDYFSLGGECVTGPMSLLSGLDPSPGGLLFHYFSVALYGVLNLIMEtgaysifgkqlssfekltnva 497

                        490       500
                 ....*....|....*....|....*
gi 79328611  465 --FPSPLRIWHSLRLFVGYENVGSP 487
Cdd:PTZ00367 498 sfFVDPERIKHALYLLGAATTIAAP 522
PRK06185 PRK06185
FAD-dependent oxidoreductase;
46-215 3.18e-20

FAD-dependent oxidoreductase;


Pssm-ID: 235729 [Multi-domain]  Cd Length: 407  Bit Score: 92.61  E-value: 3.18e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   46 TDVIIVGAGVGGSALAYALAKDGRRVHVIE------RDLReperimGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTV 119
Cdd:PRK06185   7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEkhadflRDFR------GDTVHPSTLELMDELGLLERFLELPHQKVRTLRF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  120 YKDGKEA-VASF---PVDNNNFPFDPSArsfhngRFVQRLRQKASSLPNVRLEEGT-VKSLIEEKGVIKGVTYKNsAGEE 194
Cdd:PRK06185  81 EIGGRTVtLADFsrlPTPYPYIAMMPQW------DFLDFLAEEASAYPNFTLRMGAeVTGLIEEGGRVTGVRART-PDGP 153

                        170       180
                 ....*....|....*....|.
gi 79328611  195 TTALAPLTVVCDGCYSNLRRS 215
Cdd:PRK06185 154 GEIRADLVVGADGRHSRVRAL 174
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 46-216 2.33e-18

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 85.76  E-value: 2.33e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  46 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIdAQKATGMTVY--KDG 123
Cdd:COG0654   4 TDVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALSPRSLELLRRLGLWDRLLAR-GAPIRGIRVRdgSDG 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611 124 KEaVASFPVDNNNFPFdpsARSFHNGRFVQRLRQKASSLpNVRLEEGT-VKSLI-EEKGVikGVTYKNsaGEETTalAPL 201
Cdd:COG0654  83 RV-LARFDAAETGLPA---GLVVPRADLERALLEAARAL-GVELRFGTeVTGLEqDADGV--TVTLAD--GRTLR--ADL 151

                       170
                ....*....|....*
gi 79328611 202 TVVCDGCYSNLRRSL 216
Cdd:COG0654 152 VVGADGARSAVRRLL 166
PRK07045 PRK07045
putative monooxygenase; Reviewed
 43-438 2.24e-17

putative monooxygenase; Reviewed


Pssm-ID: 136171 [Multi-domain]  Cd Length: 388  Bit Score: 83.80  E-value: 2.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   43 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKD 122
Cdd:PRK07045   3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHD 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  123 gKEAVASFPVDNNnfpfdpSARSFHNGRFVQRLRQ----KASSLPNVRLEEGTVKSLIE--EKGVIKGVTYknSAGEett 196
Cdd:PRK07045  83 -KELIASLDYRSA------SALGYFILIPCEQLRRlllaKLDGLPNVRLRFETSIERIErdADGTVTSVTL--SDGE--- 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  197 ALAPLTVV-CDGCYSNLRRSLNDNNAEVLSYQ----VGFISKNCQLEEPEKLkLIMSKPSFTMLYQISSTDVRCVFevlp 271
Cdd:PRK07045 151 RVAPTVLVgADGARSMIRDDVLRMPAERVPYAtpmaFGTIALTDSVRECNRL-YVDSNQGLAYFYPIGDQATRLVV---- 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  272 nnipSISNGEMATFVKNTIAPQVPLKLRKIF-------LKGIDEGEHIKAMPTKKMTATLSEKKGVILLGDAFNMRHPAI 344
Cdd:PRK07045 226 ----SFPADEMQGYLADTTRTKLLARLNEFVgdesadaMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPIT 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  345 ASGMMVLLSDILILRRLLQplSNLGNAQKISQVIKSFYDIRKPMSATVNTLGNAfsqvlVASTDEAKEAMrQGCYDYLSS 424
Cdd:PRK07045 302 GQGMNLAIEDAGELGACLD--LHLSGQIALADALERFERIRRPVNEAVISYGHA-----LATTYHDRAAL-VANFRSQLQ 373

                        410
                 ....*....|....
gi 79328611  425 GGFRTSgmmALLGG 438
Cdd:PRK07045 374 TSGRDA---AWLGA 384
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
53-216 2.84e-16

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 78.86  E-value: 2.84e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  53 AGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEgidaQKATGMTVYKDGKEAVASFPV 132
Cdd:COG0644   1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGGLLPRALEELEPLGLDEPLE----RPVRGARFYSPGGKSVELPPG 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611 133 DNNNFPFDpsaRsfhnGRFVQRLRQKASSLpNVRLEEGT-VKSLIEEKGVIKgVTyknsAGEETTALAPLTVVCDGCYSN 211
Cdd:COG0644  77 RGGGYVVD---R----ARFDRWLAEQAEEA-GAEVRTGTrVTDVLRDDGRVV-VR----TGDGEEIRADYVVDADGARSL 143


                ....*
gi 79328611 212 LRRSL 216
Cdd:COG0644 144 LARKL 148
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
46-211 1.81e-13

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 71.47  E-value: 1.81e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  46 TDVIIVGAGVGGSALAYALAKDGRRVHVIERD---------------------------------LREPERIMGEF---- 88
Cdd:COG0665   3 ADVVVIGGGIAGLSTAYHLARRGLDVTVLERGrpgsgasgrnagqlrpglaaladralvrlareaLDLWRELAAELgidc 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  89 -MQPGGRLML--SKLGLEDCLEGIDAQKATGMTV-YKDGKEAVASFP-VDNNNFP---FDPSARSFHNGRFVQRLRQKAS 160
Cdd:COG0665  83 dFRRTGVLYLarTEAELAALRAEAEALRALGLPVeLLDAAELREREPgLGSPDYAgglYDPDDGHVDPAKLVRALARAAR 162

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 79328611 161 SLpNVRLEEGT-VKSLIEEKGVIKGVTykNSAGEETtalAPLTVVCDGCYSN 211
Cdd:COG0665 163 AA-GVRIREGTpVTGLEREGGRVTGVR--TERGTVR---ADAVVLAAGAWSA 208
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 47-212 7.01e-10

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 60.49  E-value: 7.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611    47 DVIIVGAGVGGSALAYALAKDGRRVHVIERD-------------------------------------LREPERIMG--- 86
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGddpgsgasgrnaglihpglrylepselarlalealdlWEELEEELGidc 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611    87 EFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYK-DGKEAVASFPvDNNNFP---FDPSARSFHNGRFVQRLRQKASSL 162
Cdd:pfam01266  81 GFRRCGVLVLARDEEEEALEKLLAALRRLGVPAELlDAEELRELEP-LLPGLRgglFYPDGGHVDPARLLRALARAAEAL 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 79328611   163 pNVRLEEGT-VKSLIEEKGVikgvtyknsAGEETTALAPLTVVCDGCYSNL 212
Cdd:pfam01266 160 -GVRIIEGTeVTGIEEEGGV---------WGVVTTGEADAVVNAAGAWADL 200
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
50-76 3.97e-07

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 47.14  E-value: 3.97e-07
                          10        20
                  ....*....|....*....|....*..
gi 79328611    50 IVGAGVGGSALAYALAKDGRRVHVIER 76
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEK 27
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 47-216 1.04e-06

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 50.40  E-value: 1.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611    47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDlREP-ERIMGEFMQPGGrlmLSKLGLEDCLEGIDAQKAT----GMTVYK 121
Cdd:TIGR02032   2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKK-SFPrYKPCGGALSPRA---LEELDLPGELIVNLVRGARffspNGDSVE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   122 DGKEAVASFPVDNNNFpfdpsarsfhnGRFVQRLRQKASSlpNVRLEEgTVKSLIEEKGVIkGVTYknsAGEETTALAPL 201
Cdd:TIGR02032  78 IPIETELAYVIDRDAF-----------DEQLAERAQEAGA--ELRLGT-RVLDVEIHDDRV-VVIV---RGSEGTVTAKI 139

                         170
                  ....*....|....*
gi 79328611   202 TVVCDGCYSNLRRSL 216
Cdd:TIGR02032 140 VIGADGSRSIVAKKL 154
PRK08163 PRK08163
3-hydroxybenzoate 6-monooxygenase;
45-223 1.80e-06

3-hydroxybenzoate 6-monooxygenase;


Pssm-ID: 181262 [Multi-domain]  Cd Length: 396  Bit Score: 50.04  E-value: 1.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   45 ATDVIIVGAGVGGSALAYALAKDGRRVHVIER--DLREperiMGEFMQ--PGGRLMLSKLGLedclegidAQKATGMTVY 120
Cdd:PRK08163   4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQaaEIGE----IGAGIQlgPNAFSALDALGV--------GEAARQRAVF 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  121 KDG--------KEAVASFPVDnnnfpfDPSARSFHNGRFV-------QRLRQKASSLPNVRLEEGTVKSLIEEKGviKGV 185
Cdd:PRK08163  72 TDHltmmdavdAEEVVRIPTG------QAFRARFGNPYAVihradihLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGV 143

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 79328611  186 TYKNSAGEETTALAplTVVCDGCYSNLRRSLNDNNAEV 223
Cdd:PRK08163 144 TVFDQQGNRWTGDA--LIGCDGVKSVVRQSLVGDAPRV 179
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 47-76 3.78e-06

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 49.44  E-value: 3.78e-06
                        10        20        30
                ....*....|....*....|....*....|.
gi 79328611  47 DVIIVGAGVGGSALAYALAKD-GRRVHVIER 76
Cdd:COG2303   6 DYVIVGAGSAGCVLANRLSEDaGLRVLLLEA 36
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
46-76 4.90e-06

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 48.60  E-value: 4.90e-06
                        10        20        30
                ....*....|....*....|....*....|..
gi 79328611  46 TDVIIVGAGVGGSALAYALAK-DGRRVHVIER 76
Cdd:COG0579   5 YDVVIIGAGIVGLALARELSRyEDLKVLVLEK 36
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 47-95 8.89e-06

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 47.92  E-value: 8.89e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 79328611  47 DVIIVGAGVGGSALAYALAKDGRRVHVIERdlREperimgefmQPGGRL 95
Cdd:COG1233   5 DVVVIGAGIGGLAAAALLARAGYRVTVLEK--ND---------TPGGRA 42
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 46-216 1.07e-05

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 47.32  E-value: 1.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611    46 TDVIIVGAGVGGSALAYALAKDGRRVHVIER---DLREP------ERIMGefmqpggrlMLSKLGLED-CLEGIDAQKAT 115
Cdd:pfam01494   2 TDVLIVGGGPAGLMLALLLARAGVRVVLVERhatTSVLPrahglnQRTME---------LLRQAGLEDrILAEGVPHEGM 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   116 GMTVYkdgkeavASFPVDNNNFPFDPSARSFHNGRFVQR-LRQKASSLPnVRLEEGT-VKSLIEEKGVIKGVTYKNSAGE 193
Cdd:pfam01494  73 GLAFY-------NTRRRADLDFLTSPPRVTVYPQTELEPiLVEHAEARG-AQVRFGTeVLSLEQDGDGVTAVVRDRRDGE 144

                         170       180
                  ....*....|....*....|...
gi 79328611   194 ETTALAPLTVVCDGCYSNLRRSL 216
Cdd:pfam01494 145 EYTVRAKYLVGCDGGRSPVRKTL 167
PRK06184 PRK06184
hypothetical protein; Provisional
 45-216 1.76e-05

hypothetical protein; Provisional


Pssm-ID: 235728 [Multi-domain]  Cd Length: 502  Bit Score: 47.29  E-value: 1.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   45 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERdLREPER-IMGEFMQPGGRLMLSKLGLedclegIDAQKATG-----MT 118
Cdd:PRK06184   3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEK-APEPFPgSRGKGIQPRTQEVFDDLGV------LDRVVAAGglyppMR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  119 VYKDGKEAVASFPVDnnnfPFDPS-ARSFHNGRFV------QRLRQKASSLpNVRLEEGTvkSLIEEKGVIKGVTYK-NS 190
Cdd:PRK06184  76 IYRDDGSVAESDMFA----HLEPTpDEPYPLPLMVpqwrteRILRERLAEL-GHRVEFGC--ELVGFEQDADGVTARvAG 148

                        170       180
                 ....*....|....*....|....*.
gi 79328611  191 AGEETTALAPLTVVCDGCYSNLRRSL 216
Cdd:PRK06184 149 PAGEETVRARYLVGADGGRSFVRKAL 174
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
41-95 3.01e-05

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 46.45  E-value: 3.01e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 79328611  41 REDGATDVIIVGAGVGGSALAYALAKDGRRVHVIE-RDlrepeRImgefmqpGGRL 95
Cdd:COG1231   3 RRARGKDVVIVGAGLAGLAAARELRKAGLDVTVLEaRD-----RV-------GGRV 46
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 46-79 3.38e-05

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 45.98  E-value: 3.38e-05
                        10        20        30
                ....*....|....*....|....*....|....
gi 79328611  46 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 79
Cdd:COG1232   2 KRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDR 35
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 46-76 8.22e-05

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 44.85  E-value: 8.22e-05
                        10        20        30
                ....*....|....*....|....*....|.
gi 79328611  46 TDVIIVGAGVGGSALAYALAKDGRRVHVIER 76
Cdd:COG2072   7 VDVVVIGAGQAGLAAAYHLRRAGIDFVVLEK 37
PRK07494 PRK07494
UbiH/UbiF family hydroxylase;
42-102 9.03e-05

UbiH/UbiF family hydroxylase;


Pssm-ID: 181001 [Multi-domain]  Cd Length: 388  Bit Score: 44.51  E-value: 9.03e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79328611   42 EDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRlMLSKLGL 102
Cdd:PRK07494   4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIR-FLERLGL 63
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 47-77 9.35e-05

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 44.84  E-value: 9.35e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERD 77
Cdd:PRK01747 262 DAAIIGGGIAGAALALALARRGWQVTLYEAD 292
PRK07233 PRK07233
hypothetical protein; Provisional
 50-77 1.33e-04

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 44.11  E-value: 1.33e-04
                         10        20
                 ....*....|....*....|....*...
gi 79328611   50 IVGAGVGGSALAYALAKDGRRVHVIERD 77
Cdd:PRK07233   4 IVGGGIAGLAAAYRLAKRGHEVTVFEAD 31
PRK12834 PRK12834
putative FAD-binding dehydrogenase; Reviewed
 46-107 1.35e-04

putative FAD-binding dehydrogenase; Reviewed


Pssm-ID: 183782 [Multi-domain]  Cd Length: 549  Bit Score: 44.50  E-value: 1.35e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 79328611   46 TDVIIVGAGVGGSALAYALAKDGRRVHVIErdlREPERIMG--EFMQPGGRLMLS-----KLGLEDCLE 107
Cdd:PRK12834   5 ADVIVVGAGLAGLVAAAELADAGKRVLLLD---QENEANLGgqAFWSLGGLFLVDspeqrRLGIKDSLE 70
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
46-99 2.73e-04

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 42.80  E-value: 2.73e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 79328611  46 TDVIIVGAGVGGSALAYALAKDGRRVHVIERdlreperimgefMQPGGRLMLSK 99
Cdd:COG0492   1 YDVVIIGAGPAGLTAAIYAARAGLKTLVIEG------------GEPGGQLATTK 42
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 47-76 2.77e-04

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 43.05  E-value: 2.77e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 79328611    47 DVIIVGAGVGGSALAYALAKDGRRVHVIER 76
Cdd:pfam00890   1 DVLVIGGGLAGLAAALAAAEAGLKVAVVEK 30
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 46-77 2.77e-04

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 43.15  E-value: 2.77e-04
                        10        20        30
                ....*....|....*....|....*....|..
gi 79328611  46 TDVIIVGAGVGGSALAYALAKDGRRVHVIERD 77
Cdd:COG1249   4 YDLVVIGAGPGGYVAAIRAAQLGLKVALVEKG 35
PRK10015 PRK10015
oxidoreductase; Provisional
 43-217 3.56e-04

oxidoreductase; Provisional


Pssm-ID: 182194 [Multi-domain]  Cd Length: 429  Bit Score: 43.04  E-value: 3.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   43 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMgefmqPGGRLMLSKlgledcLEGIDAQKATGMTVYKD 122
Cdd:PRK10015   3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNM-----TGGRLYAHT------LEAIIPGFAASAPVERK 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  123 GKEAVASFPVDNNNFPFD--------PSARSFH--NGRFVQRLRQKASS-----LPNVRleegtVKSLIEEKGVIKGVty 187
Cdd:PRK10015  72 VTREKISFLTEESAVTLDfhreqpdvPQHASYTvlRNRLDPWLMEQAEQagaqfIPGVR-----VDALVREGNKVTGV-- 144

                        170       180       190
                 ....*....|....*....|....*....|
gi 79328611  188 knSAGEETTAlAPLTVVCDGCYSNLRRSLN 217
Cdd:PRK10015 145 --QAGDDILE-ANVVILADGVNSMLGRSLG 171
PRK09126 PRK09126
FAD-dependent hydroxylase;
46-76 4.63e-04

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 42.62  E-value: 4.63e-04
                         10        20        30
                 ....*....|....*....|....*....|.
gi 79328611   46 TDVIIVGAGVGGSALAYALAKDGRRVHVIER 76
Cdd:PRK09126   4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIER 34
PRK06370 PRK06370
FAD-containing oxidoreductase;
47-78 6.11e-04

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 42.11  E-value: 6.11e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDL 78
Cdd:PRK06370   7 DAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38
PRK12843 PRK12843
FAD-dependent oxidoreductase;
40-76 6.13e-04

FAD-dependent oxidoreductase;


Pssm-ID: 237225 [Multi-domain]  Cd Length: 578  Bit Score: 42.42  E-value: 6.13e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 79328611   40 EREDGATDVIIVGAGVGGSALAYALAKDGRRVHVIER 76
Cdd:PRK12843  11 ERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVER 47
ubiF PRK08020
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
 46-81 6.49e-04

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed


Pssm-ID: 181199 [Multi-domain]  Cd Length: 391  Bit Score: 41.89  E-value: 6.49e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 79328611   46 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREP 81
Cdd:PRK08020   6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAP 41
PRK00711 PRK00711
D-amino acid dehydrogenase;
48-76 7.45e-04

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 41.71  E-value: 7.45e-04
                         10        20
                 ....*....|....*....|....*....
gi 79328611   48 VIIVGAGVGGSALAYALAKDGRRVHVIER 76
Cdd:PRK00711   3 VVVLGSGVIGVTSAWYLAQAGHEVTVIDR 31
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 20-133 8.02e-04

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 41.34  E-value: 8.02e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  20 VFYVTNRgkkatQLADAVVEE-REDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERD---LREPERIMGEFMQPggrl 95
Cdd:COG0446 103 VFTLRTL-----DDADALREAlKEFKGKRAVVIGGGPIGLELAEALRKRGLKVTLVERAprlLGVLDPEMAALLEE---- 173

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 79328611  96 MLSKLG----LEDCLEGIDAQKATGMTVyKDGKEavasFPVD 133
Cdd:COG0446 174 ELREHGvelrLGETVVAIDGDDKVAVTL-TDGEE----IPAD 210
PRK08013 PRK08013
oxidoreductase; Provisional
 47-167 8.12e-04

oxidoreductase; Provisional


Pssm-ID: 236139 [Multi-domain]  Cd Length: 400  Bit Score: 41.57  E-value: 8.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEF------MQPGGRLMLSKLGLedcLEGIDAQKA---TGM 117
Cdd:PRK08013   5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPalrvsaINAASEKLLTRLGV---WQDILARRAscyHGM 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 79328611  118 TVY-KDgkeavaSFpvdnNNFPFDPSARSF-HNGRFV------QRLRQKASSLPNVRL 167
Cdd:PRK08013  82 EVWdKD------SF----GRIAFDDQSMGYsHLGHIIensvihYALWQKAQQSSDITL 129
PRK07364 PRK07364
FAD-dependent hydroxylase;
29-75 8.23e-04

FAD-dependent hydroxylase;


Pssm-ID: 236001 [Multi-domain]  Cd Length: 415  Bit Score: 41.54  E-value: 8.23e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 79328611   29 KATQLADAVVEEREDGATDVIIVGAGVGGSALAYALAKDGRRVHVIE 75
Cdd:PRK07364   2 TLTAATSPTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIE 48
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 46-103 9.28e-04

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 41.15  E-value: 9.28e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 79328611    46 TDVIIVGAGVGGSALAYALAKDGRRVHVIERdlrepERIMgefmqPGGRLMLSKLGLE 103
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIED-----EGTC-----PYGGCVLSKALLG 48
solA PRK11259
N-methyl-L-tryptophan oxidase;
46-76 1.09e-03

N-methyl-L-tryptophan oxidase;


Pssm-ID: 236887 [Multi-domain]  Cd Length: 376  Bit Score: 41.36  E-value: 1.09e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 79328611   46 TDVIIVGAGVGGSALAYALAKDGRRVHVIER 76
Cdd:PRK11259   4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDR 34
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
47-76 1.11e-03

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 41.30  E-value: 1.11e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGRRVHVIER 76
Cdd:PRK05249   7 DLVVIGSGPAGEGAAMQAAKLGKRVAVIER 36
COG3573 COG3573
Predicted oxidoreductase [General function prediction only];
46-86 1.28e-03

Predicted oxidoreductase [General function prediction only];


Pssm-ID: 442794 [Multi-domain]  Cd Length: 551  Bit Score: 41.32  E-value: 1.28e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 79328611  46 TDVIIVGAGVGGSALAYALAKDGRRVHVIErdlREPERIMG 86
Cdd:COG3573   6 ADVIVVGAGLAGLVAAAELADAGRRVLLLD---QEPEANLG 43
PTZ00383 PTZ00383
malate:quinone oxidoreductase; Provisional
 29-76 1.52e-03

malate:quinone oxidoreductase; Provisional


Pssm-ID: 240393 [Multi-domain]  Cd Length: 497  Bit Score: 40.88  E-value: 1.52e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 79328611   29 KATQLADAVVEEREDGATDVIIVGAGVGGSALAYALAK--DGRRVHVIER 76
Cdd:PTZ00383  29 SNQSLNTSSGNRLGSDVYDVVIVGGGVTGTALFYTLSKftNLKKIALIER 78
PRK07538 PRK07538
hypothetical protein; Provisional
 46-216 1.54e-03

hypothetical protein; Provisional


Pssm-ID: 236046 [Multi-domain]  Cd Length: 413  Bit Score: 41.04  E-value: 1.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   46 TDVIIVGAGVGGSALAYALAKDGRRVHVIE--RDLREperiMGE--FMQPGGRLMLSKLGLEDCLE--GIDAQKAT---- 115
Cdd:PRK07538   1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEaaPELRP----LGVgiNLLPHAVRELAELGLLDALDaiGIRTRELAyfnr 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  116 -GMTVYKD--GKEAvasfpvdNNNFP-FdpsarSFHNGRF--------VQRLRQKAsslpnVRL----------EEGTVK 173
Cdd:PRK07538  77 hGQRIWSEprGLAA-------GYDWPqY-----SIHRGELqmllldavRERLGPDA-----VRTghrvvgfeqdADVTVV 139

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 79328611  174 SLIEekgvikgvtykNSAGEETTALAPLTVVCDGCYSNLRRSL 216
Cdd:PRK07538 140 FLGD-----------RAGGDLVSVRGDVLIGADGIHSAVRAQL 171
PLN02576 PLN02576
protoporphyrinogen oxidase
 41-79 1.57e-03

protoporphyrinogen oxidase


Pssm-ID: 215314 [Multi-domain]  Cd Length: 496  Bit Score: 40.77  E-value: 1.57e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 79328611   41 REDGATDVIIVGAGVGGSALAYALA-KDGRRVHVIERDLR 79
Cdd:PLN02576   8 AAASSKDVAVVGAGVSGLAAAYALAsKHGVNVLVTEARDR 47
soxA_mon TIGR01377
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ...
 47-75 2.58e-03

sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]


Pssm-ID: 130444 [Multi-domain]  Cd Length: 380  Bit Score: 40.20  E-value: 2.58e-03
                          10        20
                  ....*....|....*....|....*....
gi 79328611    47 DVIIVGAGVGGSALAYALAKDGRRVHVIE 75
Cdd:TIGR01377   2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLE 30
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
 47-77 2.58e-03

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 40.28  E-value: 2.58e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 79328611    47 DVIIVGAGVGGSALAYALAKDGRRVHVIERD 77
Cdd:pfam12831   1 DVVVVGGGPAGVAAAIAAARAGAKVLLVERR 31
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 47-77 2.72e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 40.16  E-value: 2.72e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERD 77
Cdd:PRK06292   5 DVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 48-103 2.74e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 36.80  E-value: 2.74e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 79328611    48 VIIVGAGVGGSALAYALAKDGRRVHVIERDlrepERIMGEFMQPGGRLM---LSKLGLE 103
Cdd:pfam00070   2 VVVVGGGYIGLELAGALARLGSKVTVVERR----DRLLPGFDPEIAKILqekLEKNGIE 56
TrkA COG0569
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ...
 48-84 3.38e-03

Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 440335 [Multi-domain]  Cd Length: 296  Bit Score: 39.28  E-value: 3.38e-03
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 79328611  48 VIIVGAGVGGSALAYALAKDGRRVHVIERDlrePERI 84
Cdd:COG0569  98 VIIIGAGRVGRSLARELEEEGHDVVVIDKD---PERV 131
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 33-90 3.38e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 39.61  E-value: 3.38e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79328611    33 LADAVVEEREDGATDVIIVGAGVGGSALAYALAKDGRRVHVIE---RDLREPERIMGEFMQ 90
Cdd:pfam07992 140 LDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKLGKEVTLIEaldRLLRAFDEEISAALE 200
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 43-225 3.64e-03

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 39.82  E-value: 3.64e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  43 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDlrePER----IM--GEFMQPGGRLMLSKLG------LEDCLEGI- 109
Cdd:COG1053   1 DHEYDVVVVGSGGAGLRAALEAAEAGLKVLVLEKV---PPRgghtAAaqGGINAAGTNVQKAAGEdspeehFYDTVKGGd 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611 110 ---DAQKATGMTvyKDGKEAVASFpvDNNNFPFDPSA-------------RSFHNGR-----FVQRLRQKASSLpNVRLE 168
Cdd:COG1053  78 glaDQDLVEALA--EEAPEAIDWL--EAQGVPFSRTPdgrlpqfgghsvgRTCYAGDgtghaLLATLYQAALRL-GVEIF 152

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79328611 169 EGT-VKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN---LRRSLNDNNAEVLS 225
Cdd:COG1053 153 TETeVLDLIVDDGRVVGVVARDRTGEIVRIRAKAVVLATGGFGRnyeMRAEYLPEAEGALS 213
PRK07333 PRK07333
ubiquinone biosynthesis hydroxylase;
47-213 3.67e-03

ubiquinone biosynthesis hydroxylase;


Pssm-ID: 180935 [Multi-domain]  Cd Length: 403  Bit Score: 39.58  E-value: 3.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   47 DVIIVGAGVGGSALAYAL--AKDGRRVHVIE--------RDLREPERIMgefmqpGGRLMLSKLGLEDCLEGiDAQKATG 116
Cdd:PRK07333   3 DVVIAGGGYVGLALAVALkqAAPHLPVTVVDaapagawsRDPRASAIAA------AARRMLEALGVWDEIAP-EAQPITD 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611  117 MTVyKDGKEAVASFPV----DNNNFPFDPSARSFHNGRFVQRLRQKASSLpNVRLEEGTVKSLIEEKGVIKGVTyknsAG 192
Cdd:PRK07333  76 MVI-TDSRTSDPVRPVfltfEGEVEPGEPFAHMVENRVLINALRKRAEAL-GIDLREATSVTDFETRDEGVTVT----LS 149

                        170       180
                 ....*....|....*....|.
gi 79328611  193 EETTALAPLTVVCDGCYSNLR 213
Cdd:PRK07333 150 DGSVLEARLLVAADGARSKLR 170
PRK08773 PRK08773
UbiH/UbiF family hydroxylase;
47-83 4.04e-03

UbiH/UbiF family hydroxylase;


Pssm-ID: 181552 [Multi-domain]  Cd Length: 392  Bit Score: 39.46  E-value: 4.04e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERdlREPER 83
Cdd:PRK08773   8 DAVIVGGGVVGAACALALADAGLSVALVEG--REPPR 42
Thi4 pfam01946
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
 46-185 4.21e-03

Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.


Pssm-ID: 460393  Cd Length: 232  Bit Score: 38.99  E-value: 4.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611    46 TDVIIVGAGVGGSALAYALAKD-GRRVHVIERDLreperimgefmQPGGRLMLSKLGLedclegidaqkaTGMTVYKDGK 124
Cdd:pfam01946  18 SDVVIVGAGSSGLTAAYYLAKNrGLKVAIIERSV-----------SPGGGAWLGGQLF------------SAMVVRKPAH 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 79328611   125 EAVASFPVdnnnfPFDPSARSF---HNGRFVQRLRQKASSLPNVRLEEGT-VKSLIEEKGV-IKGV 185
Cdd:pfam01946  75 LFLDEFGI-----PYEDEGDYVvvkHAALFTSTLMSKALQLPNVKLFNATsVEDLIVRPGVgVAGV 135
PRK10157 PRK10157
putative oxidoreductase FixC; Provisional
 47-76 4.38e-03

putative oxidoreductase FixC; Provisional


Pssm-ID: 182273 [Multi-domain]  Cd Length: 428  Bit Score: 39.51  E-value: 4.38e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGRRVHVIER 76
Cdd:PRK10157   7 DAIIVGAGLAGSVAALVLAREGAQVLVIER 36
PRK07608 PRK07608
UbiH/UbiF family hydroxylase;
47-75 4.92e-03

UbiH/UbiF family hydroxylase;


Pssm-ID: 181057 [Multi-domain]  Cd Length: 388  Bit Score: 39.17  E-value: 4.92e-03
                         10        20
                 ....*....|....*....|....*....
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGRRVHVIE 75
Cdd:PRK07608   7 DVVVVGGGLVGASLALALAQSGLRVALLA 35
PRK08850 PRK08850
2-octaprenyl-6-methoxyphenol hydroxylase; Validated
 47-120 4.99e-03

2-octaprenyl-6-methoxyphenol hydroxylase; Validated


Pssm-ID: 236341 [Multi-domain]  Cd Length: 405  Bit Score: 39.37  E-value: 4.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPEriMGEFmqPGGRL---------MLSKLGledCLEGIDAQKA--- 114
Cdd:PRK08850   6 DVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEA--LNEL--PDVRVsalsrssehILRNLG---AWQGIEARRAapy 78


                 ....*.
gi 79328611  115 TGMTVY 120
Cdd:PRK08850  79 IAMEVW 84
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 46-74 5.42e-03

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 39.32  E-value: 5.42e-03
                        10        20
                ....*....|....*....|....*....
gi 79328611  46 TDVIIVGAGVGGSALAYALAKDGrRVHVI 74
Cdd:COG0029   5 TDVLVIGSGIAGLSAALKLAERG-RVTLL 32
PRK02106 PRK02106
choline dehydrogenase; Validated
 47-75 8.21e-03

choline dehydrogenase; Validated


Pssm-ID: 235000 [Multi-domain]  Cd Length: 560  Bit Score: 38.66  E-value: 8.21e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 79328611   47 DVIIVGAGVGGSALAYALAKDGR-RVHVIE 75
Cdd:PRK02106   7 DYIIIGAGSAGCVLANRLSEDPDvSVLLLE 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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