LSD1 zinc finger family protein [Arabidopsis thaliana]
Protein Classification
zf-LSD1 domain-containing protein( domain architecture ID 11884261)
zf-LSD1 domain-containing protein
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| zf-LSD1 super family | cl26935 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
45-75 | 1.08e-08 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. The actual alignment was detected with superfamily member TIGR01053: Pssm-ID: 474871 Cd Length: 31 Bit Score: 48.61 E-value: 1.08e-08
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| zf-LSD1 super family | cl26935 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
4-34 | 1.37e-08 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. The actual alignment was detected with superfamily member TIGR01053: Pssm-ID: 474871 Cd Length: 31 Bit Score: 48.61 E-value: 1.37e-08
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| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
95-117 | 4.40e-07 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. : Pssm-ID: 462045 Cd Length: 23 Bit Score: 44.39 E-value: 4.40e-07
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| Name | Accession | Description | Interval | E-value | ||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
45-75 | 1.08e-08 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 48.61 E-value: 1.08e-08
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| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
4-34 | 1.37e-08 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 48.61 E-value: 1.37e-08
|
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| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
95-117 | 4.40e-07 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 44.39 E-value: 4.40e-07
|
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| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
48-70 | 7.59e-07 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 43.62 E-value: 7.59e-07
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| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
7-29 | 1.38e-06 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 42.85 E-value: 1.38e-06
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| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
92-122 | 9.32e-05 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 38.21 E-value: 9.32e-05
|
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| Name | Accession | Description | Interval | E-value | ||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
45-75 | 1.08e-08 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 48.61 E-value: 1.08e-08
|
||||||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
4-34 | 1.37e-08 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 48.61 E-value: 1.37e-08
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
95-117 | 4.40e-07 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 44.39 E-value: 4.40e-07
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
48-70 | 7.59e-07 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 43.62 E-value: 7.59e-07
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
7-29 | 1.38e-06 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 42.85 E-value: 1.38e-06
|
||||||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
92-122 | 9.32e-05 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 38.21 E-value: 9.32e-05
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| Blast search parameters | ||||
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