NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|79324915|ref|NP_001031542|]
View 

myeloid leukemia factor [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Mlf1IP super family cl10932
Myelodysplasia-myeloid leukemia factor 1-interacting protein; This entry is the conserved ...
 44-133 2.69e-19

Myelodysplasia-myeloid leukemia factor 1-interacting protein; This entry is the conserved central region of a group of proteins that are putative transcriptional repressors. The structure contains a putative 14-3-3 binding motif involved in the subcellular localization of various regulatory molecules, and it may be that interaction with the transcription factor DREF could be regulated through this motif. DREF regulates proliferation-related genes in Drosophila. Mlf1IP is expressed in both the nuclei and the cytoplasm and thus may have multi-functions.


The actual alignment was detected with superfamily member pfam10248:

Pssm-ID: 463022 [Multi-domain]  Cd Length: 174  Bit Score: 80.47  E-value: 2.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324915    44 SKVTYGGIHG---AYYTSTRTRRKDGDGMVVEESKEADKTTGEATHRISRGINDKGHSVTRKLNSSGG-VESTQTLHNLD 119
Cdd:pfam10248  81 SVMTYSKVGDgppKVYQASSSTRSAPGGIKETRRAVRDSESGLEKMAIGHHIGDRGHVVEKKRNKKTGdVEENQDFINLD 160

                          90
                  ....*....|....
gi 79324915   120 EDELSGFEEAWKGN 133
Cdd:pfam10248 161 ESEAESFDEEWQRR 174
 
Name Accession Description Interval E-value
Mlf1IP pfam10248
Myelodysplasia-myeloid leukemia factor 1-interacting protein; This entry is the conserved ...
 44-133 2.69e-19

Myelodysplasia-myeloid leukemia factor 1-interacting protein; This entry is the conserved central region of a group of proteins that are putative transcriptional repressors. The structure contains a putative 14-3-3 binding motif involved in the subcellular localization of various regulatory molecules, and it may be that interaction with the transcription factor DREF could be regulated through this motif. DREF regulates proliferation-related genes in Drosophila. Mlf1IP is expressed in both the nuclei and the cytoplasm and thus may have multi-functions.


Pssm-ID: 463022 [Multi-domain]  Cd Length: 174  Bit Score: 80.47  E-value: 2.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324915    44 SKVTYGGIHG---AYYTSTRTRRKDGDGMVVEESKEADKTTGEATHRISRGINDKGHSVTRKLNSSGG-VESTQTLHNLD 119
Cdd:pfam10248  81 SVMTYSKVGDgppKVYQASSSTRSAPGGIKETRRAVRDSESGLEKMAIGHHIGDRGHVVEKKRNKKTGdVEENQDFINLD 160

                          90
                  ....*....|....
gi 79324915   120 EDELSGFEEAWKGN 133
Cdd:pfam10248 161 ESEAESFDEEWQRR 174
 
Name Accession Description Interval E-value
Mlf1IP pfam10248
Myelodysplasia-myeloid leukemia factor 1-interacting protein; This entry is the conserved ...
 44-133 2.69e-19

Myelodysplasia-myeloid leukemia factor 1-interacting protein; This entry is the conserved central region of a group of proteins that are putative transcriptional repressors. The structure contains a putative 14-3-3 binding motif involved in the subcellular localization of various regulatory molecules, and it may be that interaction with the transcription factor DREF could be regulated through this motif. DREF regulates proliferation-related genes in Drosophila. Mlf1IP is expressed in both the nuclei and the cytoplasm and thus may have multi-functions.


Pssm-ID: 463022 [Multi-domain]  Cd Length: 174  Bit Score: 80.47  E-value: 2.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79324915    44 SKVTYGGIHG---AYYTSTRTRRKDGDGMVVEESKEADKTTGEATHRISRGINDKGHSVTRKLNSSGG-VESTQTLHNLD 119
Cdd:pfam10248  81 SVMTYSKVGDgppKVYQASSSTRSAPGGIKETRRAVRDSESGLEKMAIGHHIGDRGHVVEKKRNKKTGdVEENQDFINLD 160

                          90
                  ....*....|....
gi 79324915   120 EDELSGFEEAWKGN 133
Cdd:pfam10248 161 ESEAESFDEEWQRR 174
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH