|
Name |
Accession |
Description |
Interval |
E-value |
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
190-423 |
4.87e-25 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
:
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 104.08 E-value: 4.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 190 WMQLPTMPSSVTFMCAdkesLAVGTDLLVLGKDDFSSHV--IYRYSLLTNSWSSGMKMNSPRcLFGSASL---GEIAIFA 264
Cdd:COG3055 3 WSSLPDLPTPRSEAAA----ALLDGKVYVAGGLSGGSASnsFEVYDPATNTWSELAPLPGPP-RHHAAAVaqdGKLYVFG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 265 G--GCDSQGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVFMDGKFYVIGGIGGADSKGLTcgEEYDLETKKWTQIPDL 342
Cdd:COG3055 78 GftGANPSSTPLNDVYVYDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWV--EVYDPATGTWTQLAPL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 343 SPPRS-------------------------RADQADMSPAAEAPPLVAVVNNQLYAAD-----HADMEVrkYDKENKKWL 392
Cdd:COG3055 156 PTPRDhlaaavlpdgkilviggrngsgfsnTWTTLAPLPTARAGHAAAVLGGKILVFGgesgfSDEVEA--YDPATNTWT 233
|
250 260 270
....*....|....*....|....*....|.
gi 79316620 393 TVGRLPeragsVNGWGLAFRACGERLIVIGG 423
Cdd:COG3055 234 ALGELP-----TPRHGHAAVLTDGKVYVIGG 259
|
|
| F-box_SF super family |
cl45894 |
F-box domain superfamily; This short domain is commonly found at the N-terminus of various ... |
117-161 |
2.44e-07 |
|
F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures.
The actual alignment was detected with superfamily member cd22152:
Pssm-ID: 459239 Cd Length: 45 Bit Score: 47.18 E-value: 2.44e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 79316620 117 LINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLR 161
Cdd:cd22152 1 LIPGLPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSSPELFRVR 45
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
190-423 |
4.87e-25 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 104.08 E-value: 4.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 190 WMQLPTMPSSVTFMCAdkesLAVGTDLLVLGKDDFSSHV--IYRYSLLTNSWSSGMKMNSPRcLFGSASL---GEIAIFA 264
Cdd:COG3055 3 WSSLPDLPTPRSEAAA----ALLDGKVYVAGGLSGGSASnsFEVYDPATNTWSELAPLPGPP-RHHAAAVaqdGKLYVFG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 265 G--GCDSQGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVFMDGKFYVIGGIGGADSKGLTcgEEYDLETKKWTQIPDL 342
Cdd:COG3055 78 GftGANPSSTPLNDVYVYDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWV--EVYDPATGTWTQLAPL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 343 SPPRS-------------------------RADQADMSPAAEAPPLVAVVNNQLYAAD-----HADMEVrkYDKENKKWL 392
Cdd:COG3055 156 PTPRDhlaaavlpdgkilviggrngsgfsnTWTTLAPLPTARAGHAAAVLGGKILVFGgesgfSDEVEA--YDPATNTWT 233
|
250 260 270
....*....|....*....|....*....|.
gi 79316620 393 TVGRLPeragsVNGWGLAFRACGERLIVIGG 423
Cdd:COG3055 234 ALGELP-----TPRHGHAAVLTDGKVYVIGG 259
|
|
| PHA03098 |
PHA03098 |
kelch-like protein; Provisional |
213-398 |
3.40e-14 |
|
kelch-like protein; Provisional
Pssm-ID: 222983 [Multi-domain] Cd Length: 534 Bit Score: 74.80 E-value: 3.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 213 GTDLLVLGKDDFSSHVIYRYSLLTNSWSSgMKMNSPRCLFGSASLGEIAIFAGGCDSQGKILDFAEMYNSELQTWITLPR 292
Cdd:PHA03098 250 GSIIYIHITMSIFTYNYITNYSPLSEINT-IIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 293 MNKPRKMCSGVFMDGKFYVIGGIGgaDSKGLTCGEEYDLETKKWTQIPDLSPPRSRadqadmspaaeapPLVAVVNNQLY 372
Cdd:PHA03098 329 LIYPRKNPGVTVFNNRIYVIGGIY--NSISLNTVESWKPGESKWREEPPLIFPRYN-------------PCVVNVNNLIY 393
|
170 180 190
....*....|....*....|....*....|..
gi 79316620 373 AA------DHADMEVRKYDKENKKWLTVGRLP 398
Cdd:PHA03098 394 VIggisknDELLKTVECFSLNTNKWSKGSPLP 425
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
296-343 |
1.50e-08 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 50.69 E-value: 1.50e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 79316620 296 PRKMCSGVFMDGKFYVIGGIGGADSkgLTCGEEYDLETKKWTQIPDLS 343
Cdd:pfam01344 1 RRSGAGVVVVGGKIYVIGGFDGNQS--LNSVEVYDPETNTWSKLPSMP 46
|
|
| F-box_AtAFR-like |
cd22152 |
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
117-161 |
2.44e-07 |
|
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.
Pssm-ID: 438923 Cd Length: 45 Bit Score: 47.18 E-value: 2.44e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 79316620 117 LINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLR 161
Cdd:cd22152 1 LIPGLPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSSPELFRVR 45
|
|
| Kelch |
smart00612 |
Kelch domain; |
310-349 |
7.83e-06 |
|
Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 42.93 E-value: 7.83e-06
10 20 30 40
....*....|....*....|....*....|....*....|
gi 79316620 310 YVIGGIGGADSkgLTCGEEYDLETKKWTQIPDLSPPRSRA 349
Cdd:smart00612 3 YVVGGFDGGQR--LKSVEVYDPETNKWTPLPSMPTPRSGH 40
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
190-423 |
4.87e-25 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 104.08 E-value: 4.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 190 WMQLPTMPSSVTFMCAdkesLAVGTDLLVLGKDDFSSHV--IYRYSLLTNSWSSGMKMNSPRcLFGSASL---GEIAIFA 264
Cdd:COG3055 3 WSSLPDLPTPRSEAAA----ALLDGKVYVAGGLSGGSASnsFEVYDPATNTWSELAPLPGPP-RHHAAAVaqdGKLYVFG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 265 G--GCDSQGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVFMDGKFYVIGGIGGADSKGLTcgEEYDLETKKWTQIPDL 342
Cdd:COG3055 78 GftGANPSSTPLNDVYVYDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWV--EVYDPATGTWTQLAPL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 343 SPPRS-------------------------RADQADMSPAAEAPPLVAVVNNQLYAAD-----HADMEVrkYDKENKKWL 392
Cdd:COG3055 156 PTPRDhlaaavlpdgkilviggrngsgfsnTWTTLAPLPTARAGHAAAVLGGKILVFGgesgfSDEVEA--YDPATNTWT 233
|
250 260 270
....*....|....*....|....*....|.
gi 79316620 393 TVGRLPeragsVNGWGLAFRACGERLIVIGG 423
Cdd:COG3055 234 ALGELP-----TPRHGHAAVLTDGKVYVIGG 259
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
182-349 |
4.26e-18 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 84.05 E-value: 4.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 182 AFDPVERRWMQLPTMPSSVtfmcADKESLAVGTDLLVLG--KDDFSSHVIYRYSLLTNSWSSGMKMNSPRCLFGSASL-- 257
Cdd:COG3055 94 VYDPATNTWTKLAPMPTPR----GGATALLLDGKIYVVGgwDDGGNVAWVEVYDPATGTWTQLAPLPTPRDHLAAAVLpd 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 258 GEIaIFAGGCDSQGKIldfaemynselQTWITLPRMNKPRKMCSGVFMDGKFYVIGGIGGADSKGltcgEEYDLETKKWT 337
Cdd:COG3055 170 GKI-LVIGGRNGSGFS-----------NTWTTLAPLPTARAGHAAAVLGGKILVFGGESGFSDEV----EAYDPATNTWT 233
|
170
....*....|..
gi 79316620 338 QIPDLSPPRSRA 349
Cdd:COG3055 234 ALGELPTPRHGH 245
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
151-330 |
3.85e-16 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 78.27 E-value: 3.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 151 LVKSGEIYRLR-RQNGFVEHWVYfscqllewvAFDPVERRWMQLPTMPSSVTFMCAdkeSLAVGTDLLVLGKDDFSSHvi 229
Cdd:COG3055 118 LLLDGKIYVVGgWDDGGNVAWVE---------VYDPATGTWTQLAPLPTPRDHLAA---AVLPDGKILVIGGRNGSGF-- 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 230 yrysllTNSWSSGMKMNSPRCLFGSASLGEIAIFAGGcdsQGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVFMDGKF 309
Cdd:COG3055 184 ------SNTWTTLAPLPTARAGHAAAVLGGKILVFGG---ESGFSDEVEAYDPATNTWTALGELPTPRHGHAAVLTDGKV 254
|
170 180
....*....|....*....|...
gi 79316620 310 YVIGGI--GGADSKGLTCGEEYD 330
Cdd:COG3055 255 YVIGGEtkPGVRTPLVTSAEVYD 277
|
|
| PHA03098 |
PHA03098 |
kelch-like protein; Provisional |
213-398 |
3.40e-14 |
|
kelch-like protein; Provisional
Pssm-ID: 222983 [Multi-domain] Cd Length: 534 Bit Score: 74.80 E-value: 3.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 213 GTDLLVLGKDDFSSHVIYRYSLLTNSWSSgMKMNSPRCLFGSASLGEIAIFAGGCDSQGKILDFAEMYNSELQTWITLPR 292
Cdd:PHA03098 250 GSIIYIHITMSIFTYNYITNYSPLSEINT-IIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 293 MNKPRKMCSGVFMDGKFYVIGGIGgaDSKGLTCGEEYDLETKKWTQIPDLSPPRSRadqadmspaaeapPLVAVVNNQLY 372
Cdd:PHA03098 329 LIYPRKNPGVTVFNNRIYVIGGIY--NSISLNTVESWKPGESKWREEPPLIFPRYN-------------PCVVNVNNLIY 393
|
170 180 190
....*....|....*....|....*....|..
gi 79316620 373 AA------DHADMEVRKYDKENKKWLTVGRLP 398
Cdd:PHA03098 394 VIggisknDELLKTVECFSLNTNKWSKGSPLP 425
|
|
| PHA03098 |
PHA03098 |
kelch-like protein; Provisional |
181-404 |
2.54e-13 |
|
kelch-like protein; Provisional
Pssm-ID: 222983 [Multi-domain] Cd Length: 534 Bit Score: 71.72 E-value: 2.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 181 VAFDPVERRWMQLPTM--PSSVTFMCADKESLavgtdlLVLG--KDDFSSHVIYRYSLLTNSWSSGMKMNSPRCLFGSAS 256
Cdd:PHA03098 314 VSYDTKTKSWNKVPELiyPRKNPGVTVFNNRI------YVIGgiYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 257 LGEIAIFAGGCDSQGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVFMDGKFYVIGGIGGADS-KGLTCGEEYDLETKK 335
Cdd:PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNiKVYNIVESYNPVTNK 467
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 79316620 336 WTQIPDLSPPRSRADqadmspaaeapplVAVVNNQLY--AADHADM---EVRKYDKENKKWLTVGRLPERAGSV 404
Cdd:PHA03098 468 WTELSSLNFPRINAS-------------LCIFNNKIYvvGGDKYEYyinEIEVYDDKTNTWTLFCKFPKVIGSL 528
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
286-423 |
2.23e-11 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 64.41 E-value: 2.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 286 TWITLPRMNKPRKMCSGVFMDGKFYVIGGI-GGADSKGLtcgEEYDLETKKWTQIPDLspPRSRADQAdmspaaeappLV 364
Cdd:COG3055 2 TWSSLPDLPTPRSEAAAALLDGKVYVAGGLsGGSASNSF---EVYDPATNTWSELAPL--PGPPRHHA----------AA 66
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 365 AVVNNQLYAA-----------DHADMEVrkYDKENKKWLTVGRLPERAGSvngwGLAFRACGeRLIVIGG 423
Cdd:COG3055 67 VAQDGKLYVFggftganpsstPLNDVYV--YDPATNTWTKLAPMPTPRGG----ATALLLDG-KIYVVGG 129
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
296-343 |
1.50e-08 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 50.69 E-value: 1.50e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 79316620 296 PRKMCSGVFMDGKFYVIGGIGGADSkgLTCGEEYDLETKKWTQIPDLS 343
Cdd:pfam01344 1 RRSGAGVVVVGGKIYVIGGFDGNQS--LNSVEVYDPETNTWSKLPSMP 46
|
|
| F-box_AtAFR-like |
cd22152 |
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
117-161 |
2.44e-07 |
|
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.
Pssm-ID: 438923 Cd Length: 45 Bit Score: 47.18 E-value: 2.44e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 79316620 117 LINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLR 161
Cdd:cd22152 1 LIPGLPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSSPELFRVR 45
|
|
| PHA02790 |
PHA02790 |
Kelch-like protein; Provisional |
254-372 |
4.15e-06 |
|
Kelch-like protein; Provisional
Pssm-ID: 165153 [Multi-domain] Cd Length: 480 Bit Score: 48.89 E-value: 4.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 254 SASLGEIAIFAGGCdSQGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVFMDGKFYVIGGIGGADSKgltcgEEYDLET 333
Cdd:PHA02790 267 STHVGEVVYLIGGW-MNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSV-----ERWFHGD 340
|
90 100 110
....*....|....*....|....*....|....*....
gi 79316620 334 KKWTQIPDLSPPRSRadqadmspaaeapPLVAVVNNQLY 372
Cdd:PHA02790 341 AAWVNMPSLLKPRCN-------------PAVASINNVIY 366
|
|
| PRK14131 |
PRK14131 |
N-acetylneuraminate epimerase; |
296-423 |
7.05e-06 |
|
N-acetylneuraminate epimerase;
Pssm-ID: 237617 [Multi-domain] Cd Length: 376 Bit Score: 48.09 E-value: 7.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 296 PRKMCSGVFMDGKFYVIGGIGGADSKG----LTCGEEYDLETKKWTQIpDLSPPRSRADQADMSPAAEAPPLVAVVNNQL 371
Cdd:PRK14131 74 PREQAVAAFIDGKLYVFGGIGKTNSEGspqvFDDVYKYDPKTNSWQKL-DTRSPVGLAGHVAVSLHNGKAYITGGVNKNI 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316620 372 Y--------------------AADHADM---------EVRKYDKENKKWLTVGRLP--ERAGSvngwglAFRACGERLIV 420
Cdd:PRK14131 153 FdgyfedlaaagkdktpkdkiNDAYFDKkpedyffnkEVLSYDPSTNQWKNAGESPflGTAGS------AVVIKGNKLWL 226
|
...
gi 79316620 421 IGG 423
Cdd:PRK14131 227 ING 229
|
|
| Kelch |
smart00612 |
Kelch domain; |
310-349 |
7.83e-06 |
|
Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 42.93 E-value: 7.83e-06
10 20 30 40
....*....|....*....|....*....|....*....|
gi 79316620 310 YVIGGIGGADSkgLTCGEEYDLETKKWTQIPDLSPPRSRA 349
Cdd:smart00612 3 YVVGGFDGGQR--LKSVEVYDPETNKWTPLPSMPTPRSGH 40
|
|
| Kelch_6 |
pfam13964 |
Kelch motif; |
296-346 |
5.63e-05 |
|
Kelch motif;
Pssm-ID: 404790 [Multi-domain] Cd Length: 50 Bit Score: 40.40 E-value: 5.63e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 79316620 296 PRKMCSGVFMDGKFYVIGGIGGAdSKGLTCGEEYDLETKKWTQIPDLSPPR 346
Cdd:pfam13964 1 PRTFHSVVSVGGYIYVFGGYTNA-SPALNKLEVYNPLTKSWEELPPLPTPR 50
|
|
| Kelch_3 |
pfam13415 |
Galactose oxidase, central domain; |
306-347 |
1.69e-04 |
|
Galactose oxidase, central domain;
Pssm-ID: 433188 [Multi-domain] Cd Length: 49 Bit Score: 39.20 E-value: 1.69e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 79316620 306 DGKFYVIGGIGGADSKGLTCGEEYDLETKKWTQIPDLSPPRS 347
Cdd:pfam13415 1 GDKLYIFGGLGFDGQTRLNDLYVYDLDTNTWTQIGDLPPPRS 42
|
|
| Kelch |
smart00612 |
Kelch domain; |
262-307 |
2.24e-04 |
|
Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 38.69 E-value: 2.24e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 79316620 262 IFA-GGCDSqGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVFMDG 307
Cdd:smart00612 2 IYVvGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
248-294 |
2.52e-03 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 35.67 E-value: 2.52e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 79316620 248 PRCLFGSASLGEIaIFA-GGCDSQgKILDFAEMYNSELQTWITLPRMN 294
Cdd:pfam01344 1 RRSGAGVVVVGGK-IYViGGFDGN-QSLNSVEVYDPETNTWSKLPSMP 46
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
203-246 |
2.64e-03 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 35.67 E-value: 2.64e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 79316620 203 MCADKESLAVGTDLLVLGKDDF--SSHVIYRYSLLTNSWSSGMKMN 246
Cdd:pfam01344 1 RRSGAGVVVVGGKIYVIGGFDGnqSLNSVEVYDPETNTWSKLPSMP 46
|
|
| |
