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Conserved domains on  [gi|79316384|ref|NP_001030944|]
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cyclin J18 [Arabidopsis thaliana]

Protein Classification

cyclin family protein( domain architecture ID 1750054)

cyclin family protein may associate with and activate its cognate cyclin-dependent kinase (CDK)

CATH:  1.10.472.10
Gene Ontology:  GO:0000079|GO:0019901|GO:0007049
PubMed:  14744433|30185601|15269391|15840440
SCOP:  4001102

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cyclin_N super family cl47507
Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 7-126 5.73e-05

Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain.


The actual alignment was detected with superfamily member pfam00134:

Pssm-ID: 459686 [Multi-domain]  Cd Length: 127  Bit Score: 41.35  E-value: 5.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316384     7 HLRRRLVEFLIQSTTLLELPPIVKYSALSLFfDRFrpnlvrfLQKkkaehwllQPLNESNLQLFVLISIWISCKMHCTRG 86
Cdd:pfam00134  29 KMRAILIDWLVEVHEKFKLLPETLYLAVNYL-DRF-------LSK--------KSVPKNKLQLVGVTCLFIAAKYEEIYP 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 79316384    87 LSVHSLksfgdKVITEQLFMVRDFLDAELVFLKVLKFEIG 126
Cdd:pfam00134  93 PTVEDL-----VYITDNAYTREEILRMERLILETLNFDLS 127
 
Name Accession Description Interval E-value
Cyclin_N pfam00134
Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 7-126 5.73e-05

Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain.


Pssm-ID: 459686 [Multi-domain]  Cd Length: 127  Bit Score: 41.35  E-value: 5.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316384     7 HLRRRLVEFLIQSTTLLELPPIVKYSALSLFfDRFrpnlvrfLQKkkaehwllQPLNESNLQLFVLISIWISCKMHCTRG 86
Cdd:pfam00134  29 KMRAILIDWLVEVHEKFKLLPETLYLAVNYL-DRF-------LSK--------KSVPKNKLQLVGVTCLFIAAKYEEIYP 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 79316384    87 LSVHSLksfgdKVITEQLFMVRDFLDAELVFLKVLKFEIG 126
Cdd:pfam00134  93 PTVEDL-----VYITDNAYTREEILRMERLILETLNFDLS 127
 
Name Accession Description Interval E-value
Cyclin_N pfam00134
Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a ...
 7-126 5.73e-05

Cyclin, N-terminal domain; Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain.


Pssm-ID: 459686 [Multi-domain]  Cd Length: 127  Bit Score: 41.35  E-value: 5.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79316384     7 HLRRRLVEFLIQSTTLLELPPIVKYSALSLFfDRFrpnlvrfLQKkkaehwllQPLNESNLQLFVLISIWISCKMHCTRG 86
Cdd:pfam00134  29 KMRAILIDWLVEVHEKFKLLPETLYLAVNYL-DRF-------LSK--------KSVPKNKLQLVGVTCLFIAAKYEEIYP 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 79316384    87 LSVHSLksfgdKVITEQLFMVRDFLDAELVFLKVLKFEIG 126
Cdd:pfam00134  93 PTVEDL-----VYITDNAYTREEILRMERLILETLNFDLS 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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