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Conserved domains on  [gi|79313335|ref|NP_001030747|]
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myb domain protein 15 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-138 2.35e-28

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 111.22  E-value: 2.35e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79313335    1 MNYLKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRL-------------------ED 61
Cdd:PLN03091  58 INYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLrqrgidpnthkplsevengED 137

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 79313335   62 YQPAKPKTSNKKKGTKPKSESVITSSNSTRSESELADSSNPSGESLFSTSPSTSEvSSMTLISHDGYSNEINMDNKP 138
Cdd:PLN03091 138 KNPPTDDKSDKASSVVSNELNLLKADNSKPLAALQEKRSSSISPAGYQLEVESSS-SSKINNSNNNNHSNSNLMTPT 213
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-138 2.35e-28

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 111.22  E-value: 2.35e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79313335    1 MNYLKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRL-------------------ED 61
Cdd:PLN03091  58 INYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLrqrgidpnthkplsevengED 137

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 79313335   62 YQPAKPKTSNKKKGTKPKSESVITSSNSTRSESELADSSNPSGESLFSTSPSTSEvSSMTLISHDGYSNEINMDNKP 138
Cdd:PLN03091 138 KNPPTDDKSDKASSVVSNELNLLKADNSKPLAALQEKRSSSISPAGYQLEVESSS-SSKINNSNNNNHSNSNLMTPT 213
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 10-55 4.81e-17

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 71.77  E-value: 4.81e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 79313335    10 RGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHL 55
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
10-57 8.66e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 58.00  E-value: 8.66e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 79313335     10 RGNFTKEEEDAIISLHQILG-NRWSAIAAKLPGRTDNEIKNVWHTHLKK 57
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 12-55 3.87e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.43  E-value: 3.87e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 79313335  12 NFTKEEEDAIISLHQILG-NRWSAIAAKLPGRTDNEIKNVWHTHL 55
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 2-72 6.87e-06

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 46.32  E-value: 6.87e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79313335   2 NYLKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWhTHLKKRLEDYQPAKPKTSNK 72
Cdd:COG5147  64 NHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY-VNTLEDLSSTHDSKLQRRNE 133
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-138 2.35e-28

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 111.22  E-value: 2.35e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79313335    1 MNYLKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRL-------------------ED 61
Cdd:PLN03091  58 INYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLrqrgidpnthkplsevengED 137

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 79313335   62 YQPAKPKTSNKKKGTKPKSESVITSSNSTRSESELADSSNPSGESLFSTSPSTSEvSSMTLISHDGYSNEINMDNKP 138
Cdd:PLN03091 138 KNPPTDDKSDKASSVVSNELNLLKADNSKPLAALQEKRSSSISPAGYQLEVESSS-SSKINNSNNNNHSNSNLMTPT 213
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 1-134 1.40e-26

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 102.85  E-value: 1.40e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79313335    1 MNYLKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLedyqpakpktsnKKKGTKPKS 80
Cdd:PLN03212  69 MNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL------------LRQGIDPQT 136

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 79313335   81 ESVITSSNSTRSESELadssnpSGESLFSTSP-STSEVSSMTLISHDGYS-NEINM 134
Cdd:PLN03212 137 HKPLDANNIHKPEEEV------SGGQKYPIEPiSSSHTDDTTVNGGDGDSkNSINV 186
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 10-55 4.81e-17

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 71.77  E-value: 4.81e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 79313335    10 RGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHL 55
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
10-57 8.66e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 58.00  E-value: 8.66e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 79313335     10 RGNFTKEEEDAIISLHQILG-NRWSAIAAKLPGRTDNEIKNVWHTHLKK 57
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 12-55 3.87e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.43  E-value: 3.87e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 79313335  12 NFTKEEEDAIISLHQILG-NRWSAIAAKLPGRTDNEIKNVWHTHL 55
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 2-72 6.87e-06

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 46.32  E-value: 6.87e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79313335   2 NYLKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWhTHLKKRLEDYQPAKPKTSNK 72
Cdd:COG5147  64 NHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY-VNTLEDLSSTHDSKLQRRNE 133
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 13-56 1.18e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 41.91  E-value: 1.18e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 79313335    13 FTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLK 56
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLN 44
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 6-45 2.09e-05

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 40.76  E-value: 2.09e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 79313335   6 PDIKRGNFTKEEEDAIISLHQILGNRWSAIaAKLPGRTDN 45
Cdd:cd11659   1 PSIKKTEWTREEDEKLLHLAKLLPTQWRTI-APIVGRTAQ 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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