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Conserved domains on  [gi|74136301|ref|NP_001028044|]
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lysosome-associated membrane glycoprotein 3 precursor [Macaca mulatta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lamp pfam01299
Lysosome-associated membrane glycoprotein (Lamp);
224-366 2.61e-61

Lysosome-associated membrane glycoprotein (Lamp);


:

Pssm-ID: 460152  Cd Length: 148  Bit Score: 195.10  E-value: 2.61e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301   224 KTGIYQVLNGSRLCIKAEMGIQLIVQ-DKESVFSPRRYFNLDPNATQASGNCGTRNSNLLLNFQGGFVNLTFTKD--EGS 300
Cdd:pfam01299   2 EVGNYNVTNGNGTCLLAEMGLQLNVTyKKKDNKTVQRVFNINPNTTKASGSCGGQSATLLLNFENGTLTFTFTKNasENK 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74136301   301 YYISEVGACLTVSD-PETIYQGMKHAVVMFQTVVGHSFKCVSEQSLQLSAHLQLKTTNVQLQAFDFE 366
Cdd:pfam01299  82 FYLSEVNVSLTLPDaKGPTFSASNSSLSELQAPLGSSYMCNKEQSIQVSPAFSLNTFNLQVQAFKVE 148
PRK13042 super family cl32851
superantigen-like protein SSL4; Reviewed;
100-187 5.37e-04

superantigen-like protein SSL4; Reviewed;


The actual alignment was detected with superfamily member PRK13042:

Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.54  E-value: 5.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301  100 IIYTLVTTQATSNNSHTAPPLTKVTvgpslAPYSLPPTITPPAHTTGTSSSTVNHTTGNATQPS-NQTTLPATLSIAPHK 178
Cdd:PRK13042  15 LLTTGVITTTTQAANATTPSSTKVE-----APQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTpNATTPSSTKVETPQS 89


                 ....*....
gi 74136301  179 STTGQKPVQ 187
Cdd:PRK13042  90 PTTKQVPTE 98
 
Name Accession Description Interval E-value
Lamp pfam01299
Lysosome-associated membrane glycoprotein (Lamp);
224-366 2.61e-61

Lysosome-associated membrane glycoprotein (Lamp);


Pssm-ID: 460152  Cd Length: 148  Bit Score: 195.10  E-value: 2.61e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301   224 KTGIYQVLNGSRLCIKAEMGIQLIVQ-DKESVFSPRRYFNLDPNATQASGNCGTRNSNLLLNFQGGFVNLTFTKD--EGS 300
Cdd:pfam01299   2 EVGNYNVTNGNGTCLLAEMGLQLNVTyKKKDNKTVQRVFNINPNTTKASGSCGGQSATLLLNFENGTLTFTFTKNasENK 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74136301   301 YYISEVGACLTVSD-PETIYQGMKHAVVMFQTVVGHSFKCVSEQSLQLSAHLQLKTTNVQLQAFDFE 366
Cdd:pfam01299  82 FYLSEVNVSLTLPDaKGPTFSASNSSLSELQAPLGSSYMCNKEQSIQVSPAFSLNTFNLQVQAFKVE 148
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
100-187 5.37e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.54  E-value: 5.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301  100 IIYTLVTTQATSNNSHTAPPLTKVTvgpslAPYSLPPTITPPAHTTGTSSSTVNHTTGNATQPS-NQTTLPATLSIAPHK 178
Cdd:PRK13042  15 LLTTGVITTTTQAANATTPSSTKVE-----APQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTpNATTPSSTKVETPQS 89


                 ....*....
gi 74136301  179 STTGQKPVQ 187
Cdd:PRK13042  90 PTTKQVPTE 98
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 103-218 5.05e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 39.17  E-value: 5.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301   103 TLVTTQATSNNSHTAPPLTK-------VTVGPSLAPYSLPPTITPPAHTTGTSSSTVNHTTGNATQPSNQTTLPATLSIA 175
Cdd:pfam17823  84 TEVTAEHTPHGTDLSEPATRegaadgaASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIA 163

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 74136301   176 PHKSTTGQKPVQPTHAPGTTAAAHNTTRTAAP---ASTVPgSTLAP 218
Cdd:pfam17823 164 AASAPHAASPAPRTAASSTTAASSTTAASSAPttaASSAP-ATLTP 208
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
102-226 8.10e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 38.20  E-value: 8.10e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301 102 YTLVTTQATSNNSHTAPPLTKVTVGPSLAPYSLPPTITPPAHTTGTSSSTVNHTTGNATQPSNQTTLPATLSIAPHKSTT 181
Cdd:COG3469  91 STSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTT 170

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 74136301 182 GQKPVQPTHAPGTTAAAHN-----TTRTAAPASTVPGSTlAPQPSSIKTG 226
Cdd:COG3469 171 TTTSASTTPSATTTATATTasgatTPSATTTATTTGPPT-PGLPKHVLVG 219
 
Name Accession Description Interval E-value
Lamp pfam01299
Lysosome-associated membrane glycoprotein (Lamp);
224-366 2.61e-61

Lysosome-associated membrane glycoprotein (Lamp);


Pssm-ID: 460152  Cd Length: 148  Bit Score: 195.10  E-value: 2.61e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301   224 KTGIYQVLNGSRLCIKAEMGIQLIVQ-DKESVFSPRRYFNLDPNATQASGNCGTRNSNLLLNFQGGFVNLTFTKD--EGS 300
Cdd:pfam01299   2 EVGNYNVTNGNGTCLLAEMGLQLNVTyKKKDNKTVQRVFNINPNTTKASGSCGGQSATLLLNFENGTLTFTFTKNasENK 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74136301   301 YYISEVGACLTVSD-PETIYQGMKHAVVMFQTVVGHSFKCVSEQSLQLSAHLQLKTTNVQLQAFDFE 366
Cdd:pfam01299  82 FYLSEVNVSLTLPDaKGPTFSASNSSLSELQAPLGSSYMCNKEQSIQVSPAFSLNTFNLQVQAFKVE 148
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
100-187 5.37e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.54  E-value: 5.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301  100 IIYTLVTTQATSNNSHTAPPLTKVTvgpslAPYSLPPTITPPAHTTGTSSSTVNHTTGNATQPS-NQTTLPATLSIAPHK 178
Cdd:PRK13042  15 LLTTGVITTTTQAANATTPSSTKVE-----APQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTpNATTPSSTKVETPQS 89


                 ....*....
gi 74136301  179 STTGQKPVQ 187
Cdd:PRK13042  90 PTTKQVPTE 98
PHA03247 PHA03247
large tegument protein UL36; Provisional
 104-222 7.59e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 7.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301   104 LVTTQATSNNSHTAPPLTKVTVGPSLAPySLPPTITP---PAHTTGTSSSTVnhTTGNATQPSNQTTLPATLSIAPHKST 180
Cdd:PHA03247 2721 LPPGPAAARQASPALPAAPAPPAVPAGP-ATPGGPARparPPTTAGPPAPAP--PAAPAAGPPRRLTRPAVASLSESRES 2797

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 74136301   181 TGQKPVQPTHAPGTTAAAHNTTRTAAPASTVPGSTlAPQPSS 222
Cdd:PHA03247 2798 LPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT-SAQPTA 2838
PHA02732 PHA02732
hypothetical protein; Provisional
 106-228 1.30e-03

hypothetical protein; Provisional


Pssm-ID: 165099 [Multi-domain]  Cd Length: 1467  Bit Score: 41.28  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301   106 TTQATSNNSHTAPPLTKVTVGPSLAPYSLPPTITPPAHTTGTSSSTVNHTTGNATQPSNQTTLP-ATLSIAPHKSTTGQK 184
Cdd:PHA02732 1172 DAAIFSLFGIPAPQLLSSYIPTGSVLYQDPIFTYIPPGIIGMSGTNTFTFKAAQLQLSAASSPPaATTPTPPPSSSSSSS 1251

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 74136301   185 PVQPTHAPGTTAAAHNTTRTAA------PASTVP--GSTLApQPSSIKTGIY 228
Cdd:PHA02732 1252 AQSISTSPGQIQIVLNGSTTIHinflffPALSTPkiGQILA-MPIVNSSGAF 1302
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
124-211 2.11e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 40.22  E-value: 2.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301  124 TVGPSLAPYSLPPTITPPAHTTGTSSSTVnhTTGNATQPSNQTTLPATLSIAPHKSTTGQKPVQPTHAPGTTAAAHNTTR 203
Cdd:PRK11907  19 TASNPKLAQAEEIVTTTPATSTEAEQTTP--VESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTSEAR 96


                 ....*...
gi 74136301  204 TAAPASTV 211
Cdd:PRK11907  97 TVTPAATE 104
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 108-226 2.40e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 39.93  E-value: 2.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301  108 QATSNNSHTAPPLTKVTVGPSLAPYSLPPTITPPAHTTGTSSSTVNHTTGNATQPSNQTTLPATLSIAPHKSTTGqkPVQ 187
Cdd:PTZ00436 238 KAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAA--PAK 315

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 74136301  188 PTHAPGTTAAAHNTTRTAAPASTVPGSTLAPQPSSIKTG 226
Cdd:PTZ00436 316 AAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVGKKAG 354
PHA03247 PHA03247
large tegument protein UL36; Provisional
 107-223 2.48e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 2.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301   107 TQATSNNSHTAPPLTKVTVGP--SLA-PYSLPPTITPPAHTTgtsSSTVNHTTGNATQPSNQTTLPATlSIAPHKSTTGQ 183
Cdd:PHA03247 2674 AQASSPPQRPRRRAARPTVGSltSLAdPPPPPPTPEPAPHAL---VSATPLPPGPAAARQASPALPAA-PAPPAVPAGPA 2749

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 74136301   184 KPVQPTH--APGTTAAAHNTTRTAAPASTVPGSTLAPQPSSI 223
Cdd:PHA03247 2750 TPGGPARpaRPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 103-218 5.05e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 39.17  E-value: 5.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301   103 TLVTTQATSNNSHTAPPLTK-------VTVGPSLAPYSLPPTITPPAHTTGTSSSTVNHTTGNATQPSNQTTLPATLSIA 175
Cdd:pfam17823  84 TEVTAEHTPHGTDLSEPATRegaadgaASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIA 163

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 74136301   176 PHKSTTGQKPVQPTHAPGTTAAAHNTTRTAAP---ASTVPgSTLAP 218
Cdd:pfam17823 164 AASAPHAASPAPRTAASSTTAASSTTAASSAPttaASSAP-ATLTP 208
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 108-218 5.84e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 38.78  E-value: 5.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301  108 QATSNNSHTAPPLTKVTVGPSLAPYSLPPTITPPAHTTGTSSSTVNHTTGNATQPSNQTTLPATLSIAPHKstTGQKPVQ 187
Cdd:PTZ00436 231 KAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAK--AAAAPAK 308

                         90       100       110
                 ....*....|....*....|....*....|....
gi 74136301  188 PTHAPGTTAAAhnTTRTAAP---ASTVPGSTLAP 218
Cdd:PTZ00436 309 AAAAPAKAAAP--PAKAAAPpakAATPPAKAAAP 340
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
102-226 8.10e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 38.20  E-value: 8.10e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74136301 102 YTLVTTQATSNNSHTAPPLTKVTVGPSLAPYSLPPTITPPAHTTGTSSSTVNHTTGNATQPSNQTTLPATLSIAPHKSTT 181
Cdd:COG3469  91 STSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTT 170

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 74136301 182 GQKPVQPTHAPGTTAAAHN-----TTRTAAPASTVPGSTlAPQPSSIKTG 226
Cdd:COG3469 171 TTTSASTTPSATTTATATTasgatTPSATTTATTTGPPT-PGLPKHVLVG 219
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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