|
Name |
Accession |
Description |
Interval |
E-value |
| cwf21_SRRM2-like |
cd21373 |
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar ... |
55-103 |
2.58e-20 |
|
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar proteins; This subfamily includes SRRM2 and SRRM3, both of which contain a cwf21 domain at the N-terminus. SRRM2, also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803), is required for pre-mRNA splicing as component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
:
Pssm-ID: 410600 [Multi-domain] Cd Length: 50 Bit Score: 85.32 E-value: 2.58e-20
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 319918875 55 PNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQER 103
Cdd:cd21373 1 PNKEILDHERKRKIEVKCLELEDLLEEQGYTEEEIQAKVDEYRALLLEK 49
|
|
| PRK12678 super family |
cl36163 |
transcription termination factor Rho; Provisional |
289-516 |
1.49e-08 |
|
transcription termination factor Rho; Provisional
The actual alignment was detected with superfamily member PRK12678:
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 59.15 E-value: 1.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 289 TDSRPEEVRKGRSPDRRRRGRSQESPKRMEIRERSPRRSRTPEQNKRYKGREREREQLQEKPQRKRNDSSSRSPPPKQQL 368
Cdd:PRK12678 73 PAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 369 DRRPRSEEREKPPQTRRHDSSSPSPPPNKQRQDRRQRSEERLKaplRKRPDSSPRSPSPKQQRDRRDDGKKNKVQSRHDS 448
Cdd:PRK12678 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREE---RGRDGDDRDRRDRREQGDRREERGRRDGGDRRGR 229
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 319918875 449 SSSSSTSSPSPSPSPRKDRMRRGhsgekarapspRDREKERARGGERisDRDKSRKEDRGRDGDKAKE 516
Cdd:PRK12678 230 RRRRDRRDARGDDNREDRGDRDG-----------DDGEGRGGRRGRR--FRDRDRRGRRGGDGGNERE 284
|
|
| SF-CC1 super family |
cl36939 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
483-585 |
4.38e-04 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
The actual alignment was detected with superfamily member TIGR01622:
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 44.52 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 483 RDREKERARGGERISDRDKSRKEDRGRDGDKAKEQARNRSSDSVSPKRSPFANGRQKERELEKERQEQRDREKRREEEMR 562
Cdd:TIGR01622 3 RDRERERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRSRRPNRRYRPREKRRRRGDS 82
|
90 100
....*....|....*....|...
gi 319918875 563 EEALRKARESDREKERNRSRREE 585
Cdd:TIGR01622 83 YRRRRDDRRSRREKPRARDGTPE 105
|
|
| PHA03307 super family |
cl33723 |
transcriptional regulator ICP4; Provisional |
744-918 |
8.17e-04 |
|
transcriptional regulator ICP4; Provisional
The actual alignment was detected with superfamily member PHA03307:
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.01 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 744 PPIQRQSSPPEPQSKRDDVEKKQRDPERERRPGQSSSSFTVMNDRERGKERYTPTETSSPPLSPPQRVLDRAAQVGERYM 823
Cdd:PHA03307 203 SPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRP 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 824 PSGESQSQSRGRGGERYSPSE------------LEQESSRPSPSRGRDRQSDQRKEAPPLSPREKGRIDAPQVKQAASRP 891
Cdd:PHA03307 283 GPASSSSSPRERSPSPSPSSPgsgpapssprasSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP 362
|
170 180
....*....|....*....|....*..
gi 319918875 892 SPKRTPPRQYQDPQRSLSPSPRRGVRR 918
Cdd:PHA03307 363 SSPRKRPRPSRAPSSPAASAGRPTRRR 389
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| cwf21_SRRM2-like |
cd21373 |
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar ... |
55-103 |
2.58e-20 |
|
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar proteins; This subfamily includes SRRM2 and SRRM3, both of which contain a cwf21 domain at the N-terminus. SRRM2, also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803), is required for pre-mRNA splicing as component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410600 [Multi-domain] Cd Length: 50 Bit Score: 85.32 E-value: 2.58e-20
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 319918875 55 PNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQER 103
Cdd:cd21373 1 PNKEILDHERKRKIEVKCLELEDLLEEQGYTEEEIQAKVDEYRALLLEK 49
|
|
| cwf21 |
pfam08312 |
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a ... |
60-103 |
8.25e-12 |
|
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.
Pssm-ID: 462421 [Multi-domain] Cd Length: 44 Bit Score: 60.90 E-value: 8.25e-12
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 319918875 60 LEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQER 103
Cdd:pfam08312 1 LEHERKREIEVKVLELRDELEEQGLSEEEIEEKVDELRKKLLAE 44
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
289-516 |
1.49e-08 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 59.15 E-value: 1.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 289 TDSRPEEVRKGRSPDRRRRGRSQESPKRMEIRERSPRRSRTPEQNKRYKGREREREQLQEKPQRKRNDSSSRSPPPKQQL 368
Cdd:PRK12678 73 PAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 369 DRRPRSEEREKPPQTRRHDSSSPSPPPNKQRQDRRQRSEERLKaplRKRPDSSPRSPSPKQQRDRRDDGKKNKVQSRHDS 448
Cdd:PRK12678 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREE---RGRDGDDRDRRDRREQGDRREERGRRDGGDRRGR 229
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 319918875 449 SSSSSTSSPSPSPSPRKDRMRRGhsgekarapspRDREKERARGGERisDRDKSRKEDRGRDGDKAKE 516
Cdd:PRK12678 230 RRRRDRRDARGDDNREDRGDRDG-----------DDGEGRGGRRGRR--FRDRDRRGRRGGDGGNERE 284
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
483-585 |
4.38e-04 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 44.52 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 483 RDREKERARGGERISDRDKSRKEDRGRDGDKAKEQARNRSSDSVSPKRSPFANGRQKERELEKERQEQRDREKRREEEMR 562
Cdd:TIGR01622 3 RDRERERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRSRRPNRRYRPREKRRRRGDS 82
|
90 100
....*....|....*....|...
gi 319918875 563 EEALRKARESDREKERNRSRREE 585
Cdd:TIGR01622 83 YRRRRDDRRSRREKPRARDGTPE 105
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
744-918 |
8.17e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.01 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 744 PPIQRQSSPPEPQSKRDDVEKKQRDPERERRPGQSSSSFTVMNDRERGKERYTPTETSSPPLSPPQRVLDRAAQVGERYM 823
Cdd:PHA03307 203 SPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRP 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 824 PSGESQSQSRGRGGERYSPSE------------LEQESSRPSPSRGRDRQSDQRKEAPPLSPREKGRIDAPQVKQAASRP 891
Cdd:PHA03307 283 GPASSSSSPRERSPSPSPSSPgsgpapssprasSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP 362
|
170 180
....*....|....*....|....*..
gi 319918875 892 SPKRTPPRQYQDPQRSLSPSPRRGVRR 918
Cdd:PHA03307 363 SSPRKRPRPSRAPSSPAASAGRPTRRR 389
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
431-626 |
8.87e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 8.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 431 RDRRDDGKKNKVQSRHDSSSSSSTSSPSPSPSPRKDRMRRGHSGEKARAPSPRDREKERARGGERISDRDKSRKEDRGRD 510
Cdd:PRK12678 77 ARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 511 GDKAKEQARNRSSDSVSPKRSPFANGRQKERELEKERQEQRDREKRREEEMREEALRKARESDREKERNRSRREEVSHSD 590
Cdd:PRK12678 157 RADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRR 236
|
170 180 190
....*....|....*....|....*....|....*.
gi 319918875 591 RTSSSRCQPENRRGIRGSEAEQEVLKKDRRMEEDKR 626
Cdd:PRK12678 237 DARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRR 272
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
323-771 |
1.84e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 323 SPRRSRTPEQNKRYKGREREREQLQEKPQRKRNDSSSRSPPPKQQLDRRprSEEREKPPQTRRHDSSSPSPPPNKQRQDR 402
Cdd:PTZ00121 1068 QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARK--AEEAKKKAEDARKAEEARKAEDARKAEEA 1145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 403 RQRSEERLKAPLRKRPDSSPRSPSPKQQRDRRDDGKKNKVQSRHDSSSSSSTSSPSPSPSPRKDRMRRGhsgEKARAPSP 482
Cdd:PTZ00121 1146 RKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA---EEARKAED 1222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 483 RDREKERARGGERISDRDKSRKEDRGRDGDKAKEQARNRSSDSVSPKRSPFANGRQKERELEKERQEQRDREKRREEEMR 562
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKK 1302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 563 EEALRKARESDREKERNRSRREEVSHSDRTSSSRCQPENRRGIRGSEAEQEVLKKDRRMEEDKRQEKSPPHQKMEKLAQK 642
Cdd:PTZ00121 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 643 EKTGQKDKAKAVSSSSSSSSSSSSSNSESDSDSSSSSSSSSSSSSSSSSSSDDDKKKKQSSKDSTSASKSVPNAVIAQAI 722
Cdd:PTZ00121 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 319918875 723 ARREKENRVRNGESDEGRKTYPPIQRQSSPPEPQSKRDDVEKKQRDPER 771
Cdd:PTZ00121 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| cwf21_SRRM2-like |
cd21373 |
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar ... |
55-103 |
2.58e-20 |
|
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar proteins; This subfamily includes SRRM2 and SRRM3, both of which contain a cwf21 domain at the N-terminus. SRRM2, also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803), is required for pre-mRNA splicing as component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410600 [Multi-domain] Cd Length: 50 Bit Score: 85.32 E-value: 2.58e-20
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 319918875 55 PNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQER 103
Cdd:cd21373 1 PNKEILDHERKRKIEVKCLELEDLLEEQGYTEEEIQAKVDEYRALLLEK 49
|
|
| cwf21_SRRM3 |
cd21376 |
cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins; Serine ... |
39-105 |
9.04e-18 |
|
cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins; Serine/arginine repetitive matrix protein 3 (SRRM3) may play a role in regulating breast cancer cell invasiveness. It may also be involved in RYBP-mediated breast cancer progression. SRRM3 contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410602 [Multi-domain] Cd Length: 68 Bit Score: 78.63 E-value: 9.04e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 319918875 39 RDEKDKERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQERQE 105
Cdd:cd21376 1 KSEEEIKKLDAALVKKPNREILDHERKRKVELKCMEMQELMEEQGYTEEEIRQKVSTFRQMLMEKEG 67
|
|
| cwf21_SRRM2 |
cd21375 |
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ... |
41-104 |
1.43e-17 |
|
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410601 [Multi-domain] Cd Length: 64 Bit Score: 78.13 E-value: 1.43e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 319918875 41 EKDKERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQERQ 104
Cdd:cd21375 1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
|
|
| cwf21_CWC21-like |
cd21372 |
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This ... |
56-103 |
2.14e-14 |
|
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This subfamily includes complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. Both CWC21 and CWF21 are pre-mRNA-splicing factors that may function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome, together with ISY1. SRRM2 is required for pre-mRNA splicing as a component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. Members of this family contain a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410599 [Multi-domain] Cd Length: 49 Bit Score: 68.27 E-value: 2.14e-14
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 319918875 56 NADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQER 103
Cdd:cd21372 1 DKEILEHERKRQIELKCLELRDELEDEGLSEEEIEEKVDELREKLLKE 48
|
|
| cwf21 |
pfam08312 |
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a ... |
60-103 |
8.25e-12 |
|
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.
Pssm-ID: 462421 [Multi-domain] Cd Length: 44 Bit Score: 60.90 E-value: 8.25e-12
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 319918875 60 LEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQER 103
Cdd:pfam08312 1 LEHERKREIEVKVLELRDELEEQGLSEEEIEEKVDELRKKLLAE 44
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
289-516 |
1.49e-08 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 59.15 E-value: 1.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 289 TDSRPEEVRKGRSPDRRRRGRSQESPKRMEIRERSPRRSRTPEQNKRYKGREREREQLQEKPQRKRNDSSSRSPPPKQQL 368
Cdd:PRK12678 73 PAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 369 DRRPRSEEREKPPQTRRHDSSSPSPPPNKQRQDRRQRSEERLKaplRKRPDSSPRSPSPKQQRDRRDDGKKNKVQSRHDS 448
Cdd:PRK12678 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREE---RGRDGDDRDRRDRREQGDRREERGRRDGGDRRGR 229
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 319918875 449 SSSSSTSSPSPSPSPRKDRMRRGhsgekarapspRDREKERARGGERisDRDKSRKEDRGRDGDKAKE 516
Cdd:PRK12678 230 RRRRDRRDARGDDNREDRGDRDG-----------DDGEGRGGRRGRR--FRDRDRRGRRGGDGGNERE 284
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
228-653 |
7.63e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 7.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 228 REESVNSDTESSSSDEKETSKGKRKRSDNEAPPPSKSRRRQSASSSPARSQSPQRGKQQKKTDS---RPEEVRKGRSPDR 304
Cdd:PTZ00121 1062 AKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEdarKAEEARKAEDARK 1141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 305 RRRGRSQESPKRMEIRERSPRRSRTPEQNkryKGREREREQLQEKPQRKRNDSSSRSPPPKQQLDRRPRSEEREKPPQTR 384
Cdd:PTZ00121 1142 AEEARKAEDAKRVEIARKAEDARKAEEAR---KAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEAR 1218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 385 RHDSSSPSPPPNKQRQDRRQRSEERLKAPLRKRPDSSPRSPSPKQQRDRRDDGKKNKVQSRHDSSSSSSTSSPSPSPSPR 464
Cdd:PTZ00121 1219 KAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKA 1298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 465 KDRMRRGHSGEKARAPSPRDREKERARGGERISDRDKSRKEDRGRDGDKAKEQARNRSSDSVSPKRSPFANGRQKERE-- 542
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAkk 1378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 543 --------LEKERQEQRDREKRREEEMREEALRKARESDREKERNRSRREEVSHSDRTSSsrcQPENRRgiRGSEAEQEV 614
Cdd:PTZ00121 1379 kadaakkkAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK---KAEEAK--KADEAKKKA 1453
|
410 420 430
....*....|....*....|....*....|....*....
gi 319918875 615 LKKDRRMEEDKRQEKSPPHQKMEKLAQKEKTGQKDKAKA 653
Cdd:PTZ00121 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
354-583 |
1.77e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.05 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 354 RNDSSSRSPPPKQQLDRRPRSEEREKPPQTRRHDSSSPSPPPNKQRQDRRQRSEERLKAPLRKRPDSSPRSPSPKQQRDR 433
Cdd:PRK12678 59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAAR 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 434 RDDGKKNKVQSRHDSSSSSSTSSPSPSPSPRKDRMRRGHSGEKARapspRDREKERARGGERISDRDKSRKEDRGRDGDK 513
Cdd:PRK12678 139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQA----EAERGERGRREERGRDGDDRDRRDRREQGDR 214
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 514 AKEQARNRSSDSVSpkrspfaNGRQKERELEKERQEQRDREKRREEEMREEAlrkARESDREKERNRSRR 583
Cdd:PRK12678 215 REERGRRDGGDRRG-------RRRRRDRRDARGDDNREDRGDRDGDDGEGRG---GRRGRRFRDRDRRGR 274
|
|
| cwf21 |
cd21369 |
cwf21 domain; The cwf21 domain is involved in mRNA splicing; it binds directly to the ... |
58-103 |
1.91e-04 |
|
cwf21 domain; The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevents its binding to Prp8. The domain is composed of two alpha helices. Proteins containing the cwf21 domain include complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. This domain family also includes U2-associated protein SR140 from Eumetazoa, protein RRC1, and similar proteins from plants.
Pssm-ID: 410596 [Multi-domain] Cd Length: 48 Bit Score: 40.15 E-value: 1.91e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 319918875 58 DILEHQRKRQLEVKCAELQDMMEEQG-YSAEEIEEKVNTFRLMLQER 103
Cdd:cd21369 2 DEEKRAKKREIELKVMELRDELEEQGrKPEQQIQEKVEHYRDKLLQR 48
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
483-585 |
4.38e-04 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 44.52 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 483 RDREKERARGGERISDRDKSRKEDRGRDGDKAKEQARNRSSDSVSPKRSPFANGRQKERELEKERQEQRDREKRREEEMR 562
Cdd:TIGR01622 3 RDRERERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRSRRPNRRYRPREKRRRRGDS 82
|
90 100
....*....|....*....|...
gi 319918875 563 EEALRKARESDREKERNRSRREE 585
Cdd:TIGR01622 83 YRRRRDDRRSRREKPRARDGTPE 105
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
228-506 |
7.67e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 7.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 228 REESVNSDTESSSSDEKETSKGKRKRSDNEAPPPSKSRRRQSASSSPARSQSPQRGKQQKKTDSRPEEVRKGRSPDRRRR 307
Cdd:PRK12678 69 TPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEG 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 308 GRSQESPKRMEIRERSPRRSRTPEQNKRYKGREREREQLQEKPQRKRNDSSSRSPPPKQQLDRRPRSEEREKPPQTRRHD 387
Cdd:PRK12678 149 GEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRG 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 388 ssspspppnkQRQDRRQRSEerlkaplrkrpdssprspspkQQRDRRDDGKKNKVQSRHDsssssstsspspspsPRKDR 467
Cdd:PRK12678 229 ----------RRRRRDRRDA---------------------RGDDNREDRGDRDGDDGEG---------------RGGRR 262
|
250 260 270
....*....|....*....|....*....|....*....
gi 319918875 468 MRRGhsgekarapspRDREKERARGGERISDRDKSRKED 506
Cdd:PRK12678 263 GRRF-----------RDRDRRGRRGGDGGNEREPELRED 290
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
744-918 |
8.17e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.01 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 744 PPIQRQSSPPEPQSKRDDVEKKQRDPERERRPGQSSSSFTVMNDRERGKERYTPTETSSPPLSPPQRVLDRAAQVGERYM 823
Cdd:PHA03307 203 SPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRP 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 824 PSGESQSQSRGRGGERYSPSE------------LEQESSRPSPSRGRDRQSDQRKEAPPLSPREKGRIDAPQVKQAASRP 891
Cdd:PHA03307 283 GPASSSSSPRERSPSPSPSSPgsgpapssprasSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP 362
|
170 180
....*....|....*....|....*..
gi 319918875 892 SPKRTPPRQYQDPQRSLSPSPRRGVRR 918
Cdd:PHA03307 363 SSPRKRPRPSRAPSSPAASAGRPTRRR 389
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
431-626 |
8.87e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 8.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 431 RDRRDDGKKNKVQSRHDSSSSSSTSSPSPSPSPRKDRMRRGHSGEKARAPSPRDREKERARGGERISDRDKSRKEDRGRD 510
Cdd:PRK12678 77 ARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 511 GDKAKEQARNRSSDSVSPKRSPFANGRQKERELEKERQEQRDREKRREEEMREEALRKARESDREKERNRSRREEVSHSD 590
Cdd:PRK12678 157 RADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRR 236
|
170 180 190
....*....|....*....|....*....|....*.
gi 319918875 591 RTSSSRCQPENRRGIRGSEAEQEVLKKDRRMEEDKR 626
Cdd:PRK12678 237 DARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRR 272
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
216-409 |
8.94e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 43.74 E-value: 8.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 216 REKKKDKKKKKKREESVNSDTESSSSDEKETSKGKRKRSDNEAPPPSKSRRRQSASSSPARSQSPQRGKQQKKTDSRPEE 295
Cdd:PRK12678 78 RRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEAR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 296 VRKGRSPDRRRRGRSQESPKRMEIRERSPRRSRTPEQNKRYKG----REREREQLQEKPQRKRNDSSSRSPPPKQQLDRR 371
Cdd:PRK12678 158 ADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGddrdRRDRREQGDRREERGRRDGGDRRGRRRRRDRRD 237
|
170 180 190
....*....|....*....|....*....|....*...
gi 319918875 372 PRSEEREKPPQTRRHDSSSPSPPPNKQRQDRRQRSEER 409
Cdd:PRK12678 238 ARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRR 275
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
292-653 |
9.71e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 9.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 292 RPEEVRKGRSPDRRRRGRSQESPKR-MEIRE----RSPRRSRTPEQNKRYKgREREREQLQEKPQRKRNDSSSRSPPPKQ 366
Cdd:PTZ00121 1159 KAEDARKAEEARKAEDAKKAEAARKaEEVRKaeelRKAEDARKAEAARKAE-EERKAEEARKAEDAKKAEAVKKAEEAKK 1237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 367 QLDRRPRSEEREKPPQTRRHDSSSPSPPPnkQRQDRRQRSEERLKAPLRKRPDSSPRSPSPKQQRDRRDDGKKNKVQS-- 444
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFA--RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEak 1315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 445 RHDSSSSSSTSSPSPSPSPRKDRMRRGHSGEKARAPSprDREKERARGGERISDRDKSRKEDRGRDGDKAKEQARNRSSD 524
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA--EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 525 SVSPKRSpfANGRQKERELEKERQEQRDREKRREEEMREEALRKARESDREKERNRSRREEVSHSDRTSSSRCQPENRRg 604
Cdd:PTZ00121 1394 DEAKKKA--EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK- 1470
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 319918875 605 iRGSEAEQEVLKKDRRMEEDKRQEKSPPHQKMEKLAQKEKTGQKDKAKA 653
Cdd:PTZ00121 1471 -KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
225-652 |
1.41e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 225 KKKREESVNSDTESSSSDEKETSKGKRKRSDNEAPPPSKSRRRQSASSSPARSQSPQRGKQQKKtdsRPEEVRKGRSPDR 304
Cdd:PTZ00121 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK---KADELKKAAAAKK 1418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 305 RRRGRSQ--ESPKRMEIRERSPRRSRTPEQNKRYKGREREREQLQEKPQRKRNDSSSRspppKQQLDRRPRSEEREKPPQ 382
Cdd:PTZ00121 1419 KADEAKKkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK----KKAEEAKKADEAKKKAEE 1494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 383 TRRHDSSSPSPPPNKQRQDRRQRSEERLKAPLRKRPDSSPRSPSPKQQRDRRDDGKKNKVQSRHDSSSSSSTSSPSPSPS 462
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 463 PRKDRMRRGHSGEKArapsprdrEKERARGGERISDRDKSRKEDRGRDGDKAKEQARN-RSSDSVSPKRSPFANGRQKE- 540
Cdd:PTZ00121 1575 DKNMALRKAEEAKKA--------EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEk 1646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 541 RELEKERQEQRDREKRREEEMREEALRKARESDREKERNRSRREEVSHSDRTSSSRCQPENRRGIRGSEAEQEVLKKDRR 620
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
|
410 420 430
....*....|....*....|....*....|..
gi 319918875 621 MEEDKRQEKSPPHQKMEKLAQKEKTGQKDKAK 652
Cdd:PTZ00121 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
323-771 |
1.84e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 323 SPRRSRTPEQNKRYKGREREREQLQEKPQRKRNDSSSRSPPPKQQLDRRprSEEREKPPQTRRHDSSSPSPPPNKQRQDR 402
Cdd:PTZ00121 1068 QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARK--AEEAKKKAEDARKAEEARKAEDARKAEEA 1145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 403 RQRSEERLKAPLRKRPDSSPRSPSPKQQRDRRDDGKKNKVQSRHDSSSSSSTSSPSPSPSPRKDRMRRGhsgEKARAPSP 482
Cdd:PTZ00121 1146 RKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA---EEARKAED 1222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 483 RDREKERARGGERISDRDKSRKEDRGRDGDKAKEQARNRSSDSVSPKRSPFANGRQKERELEKERQEQRDREKRREEEMR 562
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKK 1302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 563 EEALRKARESDREKERNRSRREEVSHSDRTSSSRCQPENRRGIRGSEAEQEVLKKDRRMEEDKRQEKSPPHQKMEKLAQK 642
Cdd:PTZ00121 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 643 EKTGQKDKAKAVSSSSSSSSSSSSSNSESDSDSSSSSSSSSSSSSSSSSSSDDDKKKKQSSKDSTSASKSVPNAVIAQAI 722
Cdd:PTZ00121 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 319918875 723 ARREKENRVRNGESDEGRKTYPPIQRQSSPPEPQSKRDDVEKKQRDPER 771
Cdd:PTZ00121 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
469-583 |
2.65e-03 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 41.83 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 469 RRGHSGEKARApSPRDREKERARGGERISDRDKSRKEDRGRDGDKAKEQARNRSSDSVSPKRSPFANGRQKERELEKERQ 548
Cdd:TIGR01622 2 YRDRERERLRD-SSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRSRRPNRRYRPREKRRRRG 80
|
90 100 110
....*....|....*....|....*....|....*
gi 319918875 549 EQRDREKRREEEMREEALRKARESDREKERNRSRR 583
Cdd:TIGR01622 81 DSYRRRRDDRRSRREKPRARDGTPEPLTEDERDRR 115
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
406-634 |
2.73e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.20 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 406 SEERLKAPLRKRPDSSPRSPSPKQQRDRRDDGKKNKVQSRHDSSSSSSTSSPSPSPSPRKDRMRRGHSGEKARAPSPRDR 485
Cdd:PRK12678 66 AAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 486 EKERARGGERISDRDKSRKEDRGRDGDKAKEQARNRSSDSvspkrspfANGRQKERELEKERQEQRDREKRREEEMREEA 565
Cdd:PRK12678 146 GEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEA--------ERGERGRREERGRDGDDRDRRDRREQGDRREE 217
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 319918875 566 LRKARESDREKERNRSRREEVSHSDRTSSSRCQPENRRGIRGSEAEQEVLKKDRRMEEDKRQEKSPPHQ 634
Cdd:PRK12678 218 RGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPE 286
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
350-558 |
4.86e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 41.04 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 350 PQRKRNDSSSRSPPPKQQLDRRPRSEEREKPPQTRRHDSSSPSPPPNKQRQDRRQRSEERLKAPLRKRPDSSPRSPSPKQ 429
Cdd:PRK12678 76 AARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATE 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 430 QRDRRDDGKKNKVQSRHDSSSSSSTSSPSPSPSPRKDRMRRGHSGEKARAPSPRDREKERARGGERISDRDKSRKEDRGR 509
Cdd:PRK12678 156 ARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 319918875 510 DGDKAKEQARNRSSDSVSPKRSPFANGRQKERELEKERQEQRDREKRRE 558
Cdd:PRK12678 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNERE 284
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
244-383 |
9.52e-03 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 40.44 E-value: 9.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319918875 244 KETSKGKrKRSDNEAPPPSKSRRRQSASSSPARSQSPQRGKQQKKTDSRPEEvrkgrspdrrrrgrsQESPKRMEiRERS 323
Cdd:PTZ00449 534 HEDSKES-DEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKD---------------PKHPKDPE-EPKK 596
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 319918875 324 PRRSRTPEQNKRYKGRER-EREQLQEKPQRKRNDSSSRSPPPKQqldrRPRSEEREKPPQT 383
Cdd:PTZ00449 597 PKRPRSAQRPTRPKSPKLpELLDIPKSPKRPESPKSPKRPPPPQ----RPSSPERPEGPKI 653
|
|
| |
