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Conserved domains on  [gi|392898865|ref|NP_001023154|]
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Muscle M-line assembly protein unc-89 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YabA super family cl47350
Regulator of replication initiation timing YabA [Replication, recombination and repair];
1159-1215 3.43e-03

Regulator of replication initiation timing YabA [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG4467:

Pssm-ID: 443564 [Multi-domain]  Cd Length: 107  Bit Score: 38.31  E-value: 3.43e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 392898865 1159 VQDIKSQLQKLNRLVNEMgvsgwEEELTRLRRENEQLRRELAERDATIAALQSQTVS 1215
Cdd:COG4467    17 LGELLKELGELKDEVAEL-----LEENARLRIENEHLRERLEELEKKKEKKAEKDIG 68
 
Name Accession Description Interval E-value
YabA COG4467
Regulator of replication initiation timing YabA [Replication, recombination and repair];
1159-1215 3.43e-03

Regulator of replication initiation timing YabA [Replication, recombination and repair];


Pssm-ID: 443564 [Multi-domain]  Cd Length: 107  Bit Score: 38.31  E-value: 3.43e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 392898865 1159 VQDIKSQLQKLNRLVNEMgvsgwEEELTRLRRENEQLRRELAERDATIAALQSQTVS 1215
Cdd:COG4467    17 LGELLKELGELKDEVAEL-----LEENARLRIENEHLRERLEELEKKKEKKAEKDIG 68
 
Name Accession Description Interval E-value
YabA COG4467
Regulator of replication initiation timing YabA [Replication, recombination and repair];
1159-1215 3.43e-03

Regulator of replication initiation timing YabA [Replication, recombination and repair];


Pssm-ID: 443564 [Multi-domain]  Cd Length: 107  Bit Score: 38.31  E-value: 3.43e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 392898865 1159 VQDIKSQLQKLNRLVNEMgvsgwEEELTRLRRENEQLRRELAERDATIAALQSQTVS 1215
Cdd:COG4467    17 LGELLKELGELKDEVAEL-----LEENARLRIENEHLRERLEELEKKKEKKAEKDIG 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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