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Conserved domains on  [gi|71043928|ref|NP_001020934|]
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uncharacterized protein LOC498658 precursor [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Defensin_RK-1 pfam17860
RK-1-like defensin; This family includes RK-1 a defensin like peptide from rabbit kidney. The ...
 64-97 1.29e-12

RK-1-like defensin; This family includes RK-1 a defensin like peptide from rabbit kidney. The family also includes some rat alpha defensins.


:

Pssm-ID: 375388  Cd Length: 34  Bit Score: 56.80  E-value: 1.29e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 71043928    64 KRCHCRSFCRPYENATSFCAQGLFKQHKFCCLET 97
Cdd:pfam17860   1 KRCHCRKFCRPYEVATGSCAQGLFKQKKICCRET 34
Defensin_propep pfam00879
Defensin propeptide;
15-50 9.14e-08

Defensin propeptide;


:

Pssm-ID: 459976  Cd Length: 51  Bit Score: 44.91  E-value: 9.14e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 71043928    15 FQIQADPIQEAEEETKTEEQPADEDQDVSVSFEGPE 50
Cdd:pfam00879  15 LQAQAEPLQARADEAPDQEQPGAEDQDVSISFAGDE 50
 
Name Accession Description Interval E-value
Defensin_RK-1 pfam17860
RK-1-like defensin; This family includes RK-1 a defensin like peptide from rabbit kidney. The ...
 64-97 1.29e-12

RK-1-like defensin; This family includes RK-1 a defensin like peptide from rabbit kidney. The family also includes some rat alpha defensins.


Pssm-ID: 375388  Cd Length: 34  Bit Score: 56.80  E-value: 1.29e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 71043928    64 KRCHCRSFCRPYENATSFCAQGLFKQHKFCCLET 97
Cdd:pfam17860   1 KRCHCRKFCRPYEVATGSCAQGLFKQKKICCRET 34
Defensin_propep pfam00879
Defensin propeptide;
15-50 9.14e-08

Defensin propeptide;


Pssm-ID: 459976  Cd Length: 51  Bit Score: 44.91  E-value: 9.14e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 71043928    15 FQIQADPIQEAEEETKTEEQPADEDQDVSVSFEGPE 50
Cdd:pfam00879  15 LQAQAEPLQARADEAPDQEQPGAEDQDVSISFAGDE 50
 
Name Accession Description Interval E-value
Defensin_RK-1 pfam17860
RK-1-like defensin; This family includes RK-1 a defensin like peptide from rabbit kidney. The ...
 64-97 1.29e-12

RK-1-like defensin; This family includes RK-1 a defensin like peptide from rabbit kidney. The family also includes some rat alpha defensins.


Pssm-ID: 375388  Cd Length: 34  Bit Score: 56.80  E-value: 1.29e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 71043928    64 KRCHCRSFCRPYENATSFCAQGLFKQHKFCCLET 97
Cdd:pfam17860   1 KRCHCRKFCRPYEVATGSCAQGLFKQKKICCRET 34
Defensin_propep pfam00879
Defensin propeptide;
15-50 9.14e-08

Defensin propeptide;


Pssm-ID: 459976  Cd Length: 51  Bit Score: 44.91  E-value: 9.14e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 71043928    15 FQIQADPIQEAEEETKTEEQPADEDQDVSVSFEGPE 50
Cdd:pfam00879  15 LQAQAEPLQARADEAPDQEQPGAEDQDVSISFAGDE 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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