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Conserved domains on  [gi|68163531|ref|NP_001020222|]
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protein FAM110C [Rattus norvegicus]

Protein Classification

PHA03247 and FAM110_C domain-containing protein( domain architecture ID 10624447)

PHA03247 and FAM110_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAM110_C pfam14160
Centrosome-associated C terminus; This is the C-terminus of a family of proteins that ...
 208-314 1.81e-45

Centrosome-associated C terminus; This is the C-terminus of a family of proteins that colocalize with the centrosome/microtubule organization centre in interphase and at the spindle poles in mitosis.


:

Pssm-ID: 464094  Cd Length: 113  Bit Score: 150.25  E-value: 1.81e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 68163531   208 SKGLQRSQSDLSSRYSTARAESDTFFQYCGLDPEVVESLGRENFSAASDCV-TPKMRSVSMATSDSSFSRHSED-----G 281
Cdd:pfam14160   1 RPSLHRSKSDLSSRYSLALSELERFFNYCGLDPEVVEPLGRENFTSAGASSdSSRFRSVSGSSSESGFSRRSGDssdgtG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 68163531   282 LQEEELLEQVPSTTSVVERNARIIKWLFTCKKA 314
Cdd:pfam14160  81 LDEEELAERVPSGVSVIERNARVIKWLYGCKKA 113
 
Name Accession Description Interval E-value
FAM110_C pfam14160
Centrosome-associated C terminus; This is the C-terminus of a family of proteins that ...
 208-314 1.81e-45

Centrosome-associated C terminus; This is the C-terminus of a family of proteins that colocalize with the centrosome/microtubule organization centre in interphase and at the spindle poles in mitosis.


Pssm-ID: 464094  Cd Length: 113  Bit Score: 150.25  E-value: 1.81e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 68163531   208 SKGLQRSQSDLSSRYSTARAESDTFFQYCGLDPEVVESLGRENFSAASDCV-TPKMRSVSMATSDSSFSRHSED-----G 281
Cdd:pfam14160   1 RPSLHRSKSDLSSRYSLALSELERFFNYCGLDPEVVEPLGRENFTSAGASSdSSRFRSVSGSSSESGFSRRSGDssdgtG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 68163531   282 LQEEELLEQVPSTTSVVERNARIIKWLFTCKKA 314
Cdd:pfam14160  81 LDEEELAERVPSGVSVIERNARVIKWLYGCKKA 113
 
Name Accession Description Interval E-value
FAM110_C pfam14160
Centrosome-associated C terminus; This is the C-terminus of a family of proteins that ...
 208-314 1.81e-45

Centrosome-associated C terminus; This is the C-terminus of a family of proteins that colocalize with the centrosome/microtubule organization centre in interphase and at the spindle poles in mitosis.


Pssm-ID: 464094  Cd Length: 113  Bit Score: 150.25  E-value: 1.81e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 68163531   208 SKGLQRSQSDLSSRYSTARAESDTFFQYCGLDPEVVESLGRENFSAASDCV-TPKMRSVSMATSDSSFSRHSED-----G 281
Cdd:pfam14160   1 RPSLHRSKSDLSSRYSLALSELERFFNYCGLDPEVVEPLGRENFTSAGASSdSSRFRSVSGSSSESGFSRRSGDssdgtG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 68163531   282 LQEEELLEQVPSTTSVVERNARIIKWLFTCKKA 314
Cdd:pfam14160  81 LDEEELAERVPSGVSVIERNARVIKWLYGCKKA 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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