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Conserved domains on  [gi|849520551|ref|NP_001020202|]
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Golgi-associated RAB2B interactor protein 3 [Rattus norvegicus]

Protein Classification

FAM71 family protein( domain architecture ID 10575707)

FAM71 family protein is a DUF3699 domain-containing protein; similar to Homo sapiens proteins FAM71C, FAM71D, FAM71E1, FAM71F1 and FAM71F2

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3699 pfam12480
Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is ...
 123-188 3.30e-30

Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


:

Pssm-ID: 463601  Cd Length: 71  Bit Score: 113.19  E-value: 3.30e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 849520551  123 TLELTRLLPLKFVKISIHDHEKQQLRLKLATGRTFYLQLCPSSDAREDLFCYWEKLVYLLRPPVNS 188
Cdd:pfam12480   1 TLELTRLLPLKFVELSVHDKPKQLLKLKLVTGRSFYLELCKPADHPETLFQMWIRLLHLLRSPLST 66
U2AF_lg super family cl36941
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 471-571 2.41e-03

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


The actual alignment was detected with superfamily member TIGR01642:

Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 41.03  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 849520551  471 ERDGSQKVSHTSSETQKEKRERRESDRKGSRKSSHHQRTGASRHSSSKDKGRKTSSYRSVSG-----HGKTRE--DKKEK 543
Cdd:TIGR01642   4 EPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSlryssVRRSRDrpRRRSR 83

                          90       100
                  ....*....|....*....|....*...
gi 849520551  544 GRGSLRDQRHSSSYRSESRTGHKSRKNR 571
Cdd:TIGR01642  84 SVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
 
Name Accession Description Interval E-value
DUF3699 pfam12480
Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is ...
 123-188 3.30e-30

Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


Pssm-ID: 463601  Cd Length: 71  Bit Score: 113.19  E-value: 3.30e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 849520551  123 TLELTRLLPLKFVKISIHDHEKQQLRLKLATGRTFYLQLCPSSDAREDLFCYWEKLVYLLRPPVNS 188
Cdd:pfam12480   1 TLELTRLLPLKFVELSVHDKPKQLLKLKLVTGRSFYLELCKPADHPETLFQMWIRLLHLLRSPLST 66
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 471-571 2.41e-03

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 41.03  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 849520551  471 ERDGSQKVSHTSSETQKEKRERRESDRKGSRKSSHHQRTGASRHSSSKDKGRKTSSYRSVSG-----HGKTRE--DKKEK 543
Cdd:TIGR01642   4 EPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSlryssVRRSRDrpRRRSR 83

                          90       100
                  ....*....|....*....|....*...
gi 849520551  544 GRGSLRDQRHSSSYRSESRTGHKSRKNR 571
Cdd:TIGR01642  84 SVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
 
Name Accession Description Interval E-value
DUF3699 pfam12480
Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is ...
 123-188 3.30e-30

Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


Pssm-ID: 463601  Cd Length: 71  Bit Score: 113.19  E-value: 3.30e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 849520551  123 TLELTRLLPLKFVKISIHDHEKQQLRLKLATGRTFYLQLCPSSDAREDLFCYWEKLVYLLRPPVNS 188
Cdd:pfam12480   1 TLELTRLLPLKFVELSVHDKPKQLLKLKLVTGRSFYLELCKPADHPETLFQMWIRLLHLLRSPLST 66
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 471-571 2.41e-03

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 41.03  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 849520551  471 ERDGSQKVSHTSSETQKEKRERRESDRKGSRKSSHHQRTGASRHSSSKDKGRKTSSYRSVSG-----HGKTRE--DKKEK 543
Cdd:TIGR01642   4 EPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSlryssVRRSRDrpRRRSR 83

                          90       100
                  ....*....|....*....|....*...
gi 849520551  544 GRGSLRDQRHSSSYRSESRTGHKSRKNR 571
Cdd:TIGR01642  84 SVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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