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Conserved domains on  [gi|66730302|ref|NP_001019481|]
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ADP-ribosylation factor-like protein 6-interacting protein 6 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ARL6IP6 super family cl20934
Haemopoietic lineage transmembrane helix; ADP-ribosylation factor-like protein 6-interacting ...
 135-211 4.36e-34

Haemopoietic lineage transmembrane helix; ADP-ribosylation factor-like protein 6-interacting protein 6 (ARP6) is a transmembrane helix present in the J2E erythro-leukaemic cell line, but not its myeloid variants. In tissues, ARL-6 mRNA was most abundant in brain and kidney. While ARL-6 protein was predominantly cytosolic, it is known to bind to SEC61-beta subunit of a protein conducting channel SEC61p.


The actual alignment was detected with superfamily member pfam15062:

Pssm-ID: 405709  Cd Length: 86  Bit Score: 117.25  E-value: 4.36e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66730302   135 ENSKNEDVVDTGLLGFWSLL------IISLTAGLSCCSFSWTVTYFDSFEPGMFPPTPLSP---ARFKKLTGHSFHMGYS 205
Cdd:pfam15062   1 QQLSQYVQSHWNAALDWSELhqlgskLSPLLCGLLVASFSYGIVYLDSAVPGVFPPSPFSPrskSRYRKLKGSSLHLGYL 80


                  ....*.
gi 66730302   206 MAILNG 211
Cdd:pfam15062  81 CALLNG 86
 
Name Accession Description Interval E-value
ARL6IP6 pfam15062
Haemopoietic lineage transmembrane helix; ADP-ribosylation factor-like protein 6-interacting ...
 135-211 4.36e-34

Haemopoietic lineage transmembrane helix; ADP-ribosylation factor-like protein 6-interacting protein 6 (ARP6) is a transmembrane helix present in the J2E erythro-leukaemic cell line, but not its myeloid variants. In tissues, ARL-6 mRNA was most abundant in brain and kidney. While ARL-6 protein was predominantly cytosolic, it is known to bind to SEC61-beta subunit of a protein conducting channel SEC61p.


Pssm-ID: 405709  Cd Length: 86  Bit Score: 117.25  E-value: 4.36e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66730302   135 ENSKNEDVVDTGLLGFWSLL------IISLTAGLSCCSFSWTVTYFDSFEPGMFPPTPLSP---ARFKKLTGHSFHMGYS 205
Cdd:pfam15062   1 QQLSQYVQSHWNAALDWSELhqlgskLSPLLCGLLVASFSYGIVYLDSAVPGVFPPSPFSPrskSRYRKLKGSSLHLGYL 80


                  ....*.
gi 66730302   206 MAILNG 211
Cdd:pfam15062  81 CALLNG 86
 
Name Accession Description Interval E-value
ARL6IP6 pfam15062
Haemopoietic lineage transmembrane helix; ADP-ribosylation factor-like protein 6-interacting ...
 135-211 4.36e-34

Haemopoietic lineage transmembrane helix; ADP-ribosylation factor-like protein 6-interacting protein 6 (ARP6) is a transmembrane helix present in the J2E erythro-leukaemic cell line, but not its myeloid variants. In tissues, ARL-6 mRNA was most abundant in brain and kidney. While ARL-6 protein was predominantly cytosolic, it is known to bind to SEC61-beta subunit of a protein conducting channel SEC61p.


Pssm-ID: 405709  Cd Length: 86  Bit Score: 117.25  E-value: 4.36e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66730302   135 ENSKNEDVVDTGLLGFWSLL------IISLTAGLSCCSFSWTVTYFDSFEPGMFPPTPLSP---ARFKKLTGHSFHMGYS 205
Cdd:pfam15062   1 QQLSQYVQSHWNAALDWSELhqlgskLSPLLCGLLVASFSYGIVYLDSAVPGVFPPSPFSPrskSRYRKLKGSSLHLGYL 80


                  ....*.
gi 66730302   206 MAILNG 211
Cdd:pfam15062  81 CALLNG 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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