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Conserved domains on  [gi|62955501|ref|NP_001017764|]
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uncharacterized protein LOC550461 [Danio rerio]

Protein Classification

zinc finger family protein( domain architecture ID 706824)

zinc finger family protein may be involved in transcriptional regulation; similar to Schizosaccharomyces pombe E3 ubiquitin-protein ligase hel2, which that plays a key role in the ribosome quality control (RQC), and Homo sapiens histone H4 transcription factor

Gene Ontology:  GO:0008270
PubMed:  11179890

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5236 super family cl28715
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
234-356 1.41e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


The actual alignment was detected with superfamily member COG5236:

Pssm-ID: 227561 [Multi-domain]  Cd Length: 493  Bit Score: 41.16  E-value: 1.41e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62955501 234 DHVRQHVNHI---KCPL--CDMTCTSLSTLKIHIKFRH----CDE-----RPFPcdfCESSFKNQHDLRRHMETHNEGAA 299
Cdd:COG5236 140 EDVRDEMEDLlsfKCPKskCHRRCGSLKELKKHYKAQHgfvlCSEcignkKDFW---NEIRLFRSSTLRDHKNGGLEEEG 216

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62955501 300 Y--HCTVEGCGYSSRMAHTMNQHYKRAHEdnmvpqyKCHLCDKT-------FSWCYTLTLHLRKKH 356
Cdd:COG5236 217 FkgHPLCIFCKIYFYDDDELRRHCRLRHE-------ACHICDMVgpiryqyFKSYEDLEAHFRNAH 275
 
Name Accession Description Interval E-value
COG5236 COG5236
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
234-356 1.41e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227561 [Multi-domain]  Cd Length: 493  Bit Score: 41.16  E-value: 1.41e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62955501 234 DHVRQHVNHI---KCPL--CDMTCTSLSTLKIHIKFRH----CDE-----RPFPcdfCESSFKNQHDLRRHMETHNEGAA 299
Cdd:COG5236 140 EDVRDEMEDLlsfKCPKskCHRRCGSLKELKKHYKAQHgfvlCSEcignkKDFW---NEIRLFRSSTLRDHKNGGLEEEG 216

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62955501 300 Y--HCTVEGCGYSSRMAHTMNQHYKRAHEdnmvpqyKCHLCDKT-------FSWCYTLTLHLRKKH 356
Cdd:COG5236 217 FkgHPLCIFCKIYFYDDDELRRHCRLRHE-------ACHICDMVgpiryqyFKSYEDLEAHFRNAH 275
 
Name Accession Description Interval E-value
COG5236 COG5236
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
234-356 1.41e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227561 [Multi-domain]  Cd Length: 493  Bit Score: 41.16  E-value: 1.41e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62955501 234 DHVRQHVNHI---KCPL--CDMTCTSLSTLKIHIKFRH----CDE-----RPFPcdfCESSFKNQHDLRRHMETHNEGAA 299
Cdd:COG5236 140 EDVRDEMEDLlsfKCPKskCHRRCGSLKELKKHYKAQHgfvlCSEcignkKDFW---NEIRLFRSSTLRDHKNGGLEEEG 216

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62955501 300 Y--HCTVEGCGYSSRMAHTMNQHYKRAHEdnmvpqyKCHLCDKT-------FSWCYTLTLHLRKKH 356
Cdd:COG5236 217 FkgHPLCIFCKIYFYDDDELRRHCRLRHE-------ACHICDMVgpiryqyFKSYEDLEAHFRNAH 275
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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