NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|62955339|ref|NP_001017685|]
View 

gap junction protein beta 3 [Danio rerio]

Protein Classification

gap junction protein( domain architecture ID 11981343)

gap junction protein form gap-junctions between cells and contains four transmembrane (TM) regions; one gap junction consists of a cluster of closely packed pairs of TM channels, the connexons, through which materials of low molecular weight diffuse from one cell to a neighboring cell

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Connexin pfam00029
Connexin; Connexin proteins form gap-junctions between cells. They carry four transmembrane ...
 2-202 6.31e-120

Connexin; Connexin proteins form gap-junctions between cells. They carry four transmembrane regions, hence why this family now includes Connexin_CCC, which represented the second pair of TMs.


:

Pssm-ID: 459638 [Multi-domain]  Cd Length: 217  Bit Score: 342.94  E-value: 6.31e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62955339     2 DWKTFQALLSGVNKYSTAFGRIWLSVVFVFRVMVYVVAAERVWGDEQKDFDCNTKQPGCANVCYDFYFPISHIRLWALQL 81
Cdd:pfam00029   1 DWSFLGRLLEEVNKHSTVVGKIWLTVLFIFRILVLGVAAESVWGDEQSDFVCNTLQPGCENVCYDAFFPISHIRFWVLQI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62955339    82 ILVTCPSLMVVMHVKYREERERK--------AKAKLYDNTGKKH--------GGLWWTYLISLFAKTGIEITFLYILHHI 145
Cdd:pfam00029  81 IFVSTPSLLYLGHVAHRIAREEKrrekeeeeMEEELYEEEGKKEaepkvhirGGLLWTYVLSLLFRIVLEVGFLVGQYYL 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 62955339   146 YdSFYLPRLVKCDVQPCPNVVDCYIGRPTEKRVFTYFMVGASALCIVLSVCEIIYLI 202
Cdd:pfam00029 161 Y-GFEVPPLFKCSRSPCPNTVDCFVSRPTEKTIFLLFMFVVSGLCLLLNLLELFYLG 216
 
Name Accession Description Interval E-value
Connexin pfam00029
Connexin; Connexin proteins form gap-junctions between cells. They carry four transmembrane ...
 2-202 6.31e-120

Connexin; Connexin proteins form gap-junctions between cells. They carry four transmembrane regions, hence why this family now includes Connexin_CCC, which represented the second pair of TMs.


Pssm-ID: 459638 [Multi-domain]  Cd Length: 217  Bit Score: 342.94  E-value: 6.31e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62955339     2 DWKTFQALLSGVNKYSTAFGRIWLSVVFVFRVMVYVVAAERVWGDEQKDFDCNTKQPGCANVCYDFYFPISHIRLWALQL 81
Cdd:pfam00029   1 DWSFLGRLLEEVNKHSTVVGKIWLTVLFIFRILVLGVAAESVWGDEQSDFVCNTLQPGCENVCYDAFFPISHIRFWVLQI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62955339    82 ILVTCPSLMVVMHVKYREERERK--------AKAKLYDNTGKKH--------GGLWWTYLISLFAKTGIEITFLYILHHI 145
Cdd:pfam00029  81 IFVSTPSLLYLGHVAHRIAREEKrrekeeeeMEEELYEEEGKKEaepkvhirGGLLWTYVLSLLFRIVLEVGFLVGQYYL 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 62955339   146 YdSFYLPRLVKCDVQPCPNVVDCYIGRPTEKRVFTYFMVGASALCIVLSVCEIIYLI 202
Cdd:pfam00029 161 Y-GFEVPPLFKCSRSPCPNTVDCFVSRPTEKTIFLLFMFVVSGLCLLLNLLELFYLG 216
Connexin_CCC smart01089
Gap junction channel protein cysteine-rich domain;
134-201 7.80e-33

Gap junction channel protein cysteine-rich domain;


Pssm-ID: 198157  Cd Length: 67  Bit Score: 115.66  E-value: 7.80e-33
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62955339    134 IEITFLYILHHIYdSFYLPRLVKCDVQPCPNVVDCYIGRPTEKRVFTYFMVGASALCIVLSVCEIIYL 201
Cdd:smart01089   1 LEVGFLYGQYYLY-GFQVPPLYKCSRSPCPNTVDCFVSRPTEKTIFLIFMLVVSAICILLNLLELFYL 67
 
Name Accession Description Interval E-value
Connexin pfam00029
Connexin; Connexin proteins form gap-junctions between cells. They carry four transmembrane ...
 2-202 6.31e-120

Connexin; Connexin proteins form gap-junctions between cells. They carry four transmembrane regions, hence why this family now includes Connexin_CCC, which represented the second pair of TMs.


Pssm-ID: 459638 [Multi-domain]  Cd Length: 217  Bit Score: 342.94  E-value: 6.31e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62955339     2 DWKTFQALLSGVNKYSTAFGRIWLSVVFVFRVMVYVVAAERVWGDEQKDFDCNTKQPGCANVCYDFYFPISHIRLWALQL 81
Cdd:pfam00029   1 DWSFLGRLLEEVNKHSTVVGKIWLTVLFIFRILVLGVAAESVWGDEQSDFVCNTLQPGCENVCYDAFFPISHIRFWVLQI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62955339    82 ILVTCPSLMVVMHVKYREERERK--------AKAKLYDNTGKKH--------GGLWWTYLISLFAKTGIEITFLYILHHI 145
Cdd:pfam00029  81 IFVSTPSLLYLGHVAHRIAREEKrrekeeeeMEEELYEEEGKKEaepkvhirGGLLWTYVLSLLFRIVLEVGFLVGQYYL 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 62955339   146 YdSFYLPRLVKCDVQPCPNVVDCYIGRPTEKRVFTYFMVGASALCIVLSVCEIIYLI 202
Cdd:pfam00029 161 Y-GFEVPPLFKCSRSPCPNTVDCFVSRPTEKTIFLLFMFVVSGLCLLLNLLELFYLG 216
Connexin_CCC smart01089
Gap junction channel protein cysteine-rich domain;
134-201 7.80e-33

Gap junction channel protein cysteine-rich domain;


Pssm-ID: 198157  Cd Length: 67  Bit Score: 115.66  E-value: 7.80e-33
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62955339    134 IEITFLYILHHIYdSFYLPRLVKCDVQPCPNVVDCYIGRPTEKRVFTYFMVGASALCIVLSVCEIIYL 201
Cdd:smart01089   1 LEVGFLYGQYYLY-GFQVPPLYKCSRSPCPNTVDCFVSRPTEKTIFLIFMLVVSAICILLNLLELFYL 67
CNX smart00037
Connexin homologues; Connexin channels participate in the regulation of signaling between ...
 42-75 3.28e-21

Connexin homologues; Connexin channels participate in the regulation of signaling between developing and differentiated cell types.


Pssm-ID: 128352  Cd Length: 34  Bit Score: 84.42  E-value: 3.28e-21
                           10        20        30
                   ....*....|....*....|....*....|....
gi 62955339     42 RVWGDEQKDFDCNTKQPGCANVCYDFYFPISHIR 75
Cdd:smart00037   1 SVWGDEQSDFVCNTQQPGCENVCYDQAFPISHVR 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH