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Conserved domains on  [gi|149408139|ref|NP_001014215|]
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arginine/serine-rich protein 1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RSRP super family cl26279
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
6-300 1.22e-64

Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.


The actual alignment was detected with superfamily member pfam17069:

Pssm-ID: 293674 [Multi-domain]  Cd Length: 299  Bit Score: 205.39  E-value: 1.22e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139    6 VSKYVNDMWPGSPQEKASPSTSGSGRSSRLSSRSRSRSSSRSSRPHSRSSSRSSSRSHSRPRRSRRSRSRSRSRRRhqrK 85
Cdd:pfam17069   1 MSTYVNDMWPGSPQEKKSPSTSSSGSSSRLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSRPRRSRSRSRSRRRHQR---K 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139   86 YRRYSRSYSRSRSRSRGHRYYRDSRYEQPRRYYQspspyRSRSRSRSRGRSHHRRSYYAITRGRRYYGFGRTVYPEDRPr 165
Cdd:pfam17069  78 YRRYSRSYSRSRSRSRRRRYYRRSRYRYSRRYYR-----SPSRSRSRSRSRSRGRSYYAIWRGSRYYGFGRTVYPERSP- 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139  166 wRERSRTRSRSRSRTPFRLSEKDRMELLEIAKANAAKALGTANFDLPASLR----AKEASQGAVSCSGPKTE-----HSE 236
Cdd:pfam17069 152 -RWRSRSRTRSRSRTPFRLSEKERMELLEIAKANAAKALGTQNLDLPASLRemeqAKERSRGGVSSSGDKEErvrvdLSE 230
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139  237 KQTEVGTKNaSEKSAAAQRNIAFSSNNSVAKPLEKTTKAAVEETSSGSPKIDKK------KSPYGLWIPV 300
Cdd:pfam17069 231 QKTADDEAE-TAQTSPARKQIVFSNNNAVAKPFIQTIRCLTMRDSSSSPKVTSRadivpyKRPYGLWVPI 299
 
Name Accession Description Interval E-value
RSRP pfam17069
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
6-300 1.22e-64

Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.


Pssm-ID: 293674 [Multi-domain]  Cd Length: 299  Bit Score: 205.39  E-value: 1.22e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139    6 VSKYVNDMWPGSPQEKASPSTSGSGRSSRLSSRSRSRSSSRSSRPHSRSSSRSSSRSHSRPRRSRRSRSRSRSRRRhqrK 85
Cdd:pfam17069   1 MSTYVNDMWPGSPQEKKSPSTSSSGSSSRLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSRPRRSRSRSRSRRRHQR---K 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139   86 YRRYSRSYSRSRSRSRGHRYYRDSRYEQPRRYYQspspyRSRSRSRSRGRSHHRRSYYAITRGRRYYGFGRTVYPEDRPr 165
Cdd:pfam17069  78 YRRYSRSYSRSRSRSRRRRYYRRSRYRYSRRYYR-----SPSRSRSRSRSRSRGRSYYAIWRGSRYYGFGRTVYPERSP- 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139  166 wRERSRTRSRSRSRTPFRLSEKDRMELLEIAKANAAKALGTANFDLPASLR----AKEASQGAVSCSGPKTE-----HSE 236
Cdd:pfam17069 152 -RWRSRSRTRSRSRTPFRLSEKERMELLEIAKANAAKALGTQNLDLPASLRemeqAKERSRGGVSSSGDKEErvrvdLSE 230
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139  237 KQTEVGTKNaSEKSAAAQRNIAFSSNNSVAKPLEKTTKAAVEETSSGSPKIDKK------KSPYGLWIPV 300
Cdd:pfam17069 231 QKTADDEAE-TAQTSPARKQIVFSNNNAVAKPFIQTIRCLTMRDSSSSPKVTSRadivpyKRPYGLWVPI 299
 
Name Accession Description Interval E-value
RSRP pfam17069
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
6-300 1.22e-64

Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.


Pssm-ID: 293674 [Multi-domain]  Cd Length: 299  Bit Score: 205.39  E-value: 1.22e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139    6 VSKYVNDMWPGSPQEKASPSTSGSGRSSRLSSRSRSRSSSRSSRPHSRSSSRSSSRSHSRPRRSRRSRSRSRSRRRhqrK 85
Cdd:pfam17069   1 MSTYVNDMWPGSPQEKKSPSTSSSGSSSRLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSRPRRSRSRSRSRRRHQR---K 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139   86 YRRYSRSYSRSRSRSRGHRYYRDSRYEQPRRYYQspspyRSRSRSRSRGRSHHRRSYYAITRGRRYYGFGRTVYPEDRPr 165
Cdd:pfam17069  78 YRRYSRSYSRSRSRSRRRRYYRRSRYRYSRRYYR-----SPSRSRSRSRSRSRGRSYYAIWRGSRYYGFGRTVYPERSP- 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139  166 wRERSRTRSRSRSRTPFRLSEKDRMELLEIAKANAAKALGTANFDLPASLR----AKEASQGAVSCSGPKTE-----HSE 236
Cdd:pfam17069 152 -RWRSRSRTRSRSRTPFRLSEKERMELLEIAKANAAKALGTQNLDLPASLRemeqAKERSRGGVSSSGDKEErvrvdLSE 230
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149408139  237 KQTEVGTKNaSEKSAAAQRNIAFSSNNSVAKPLEKTTKAAVEETSSGSPKIDKK------KSPYGLWIPV 300
Cdd:pfam17069 231 QKTADDEAE-TAQTSPARKQIVFSNNNAVAKPFIQTIRCLTMRDSSSSPKVTSRadivpyKRPYGLWVPI 299
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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