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Conserved domains on  [gi|62078855|ref|NP_001014083|]
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coiled-coil domain-containing protein 91 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF5401 super family cl38662
Family of unknown function (DUF5401); This is a family of unknown function found in ...
130-442 5.31e-10

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


The actual alignment was detected with superfamily member pfam17380:

Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 61.68  E-value: 5.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   130 VSNSQLRQKISSLET-KLKASEEEK----QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQaRYREL----QEKHKQEL 200
Cdd:pfam17380 284 VSERQQQEKFEKMEQeRLRQEKEEKarevERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELerirQEERKREL 362
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   201 EDMRKaghEALSIIVDEYKAL--LQ-------SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEV 262
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELerLQmerqqknERVRQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRR 439
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   263 LDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEMQKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 342
Cdd:pfam17380 440 LEEERAREMERVRLE-EQERQQQVERLRQ--QEEERKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   343 TEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELF 422
Cdd:pfam17380 510 EE-----ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVE 583
                         330       340
                  ....*....|....*....|
gi 62078855   423 LSCAQKQLSAliATEPVDIE 442
Cdd:pfam17380 584 SEKARAEYEA--TTPITTIK 601
 
Name Accession Description Interval E-value
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
130-442 5.31e-10

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 61.68  E-value: 5.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   130 VSNSQLRQKISSLET-KLKASEEEK----QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQaRYREL----QEKHKQEL 200
Cdd:pfam17380 284 VSERQQQEKFEKMEQeRLRQEKEEKarevERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELerirQEERKREL 362
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   201 EDMRKaghEALSIIVDEYKAL--LQ-------SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEV 262
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELerLQmerqqknERVRQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRR 439
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   263 LDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEMQKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 342
Cdd:pfam17380 440 LEEERAREMERVRLE-EQERQQQVERLRQ--QEEERKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   343 TEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELF 422
Cdd:pfam17380 510 EE-----ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVE 583
                         330       340
                  ....*....|....*....|
gi 62078855   423 LSCAQKQLSAliATEPVDIE 442
Cdd:pfam17380 584 SEKARAEYEA--TTPITTIK 601
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
175-414 4.76e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 4.76e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 175 LKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHA 254
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 255 QHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVH 334
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 335 AEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 414
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
PTZ00121 PTZ00121
MAEBL; Provisional
143-413 3.81e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.84  E-value: 3.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   143 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKA-- 220
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAde 1514
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   221 LLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKEllKEKIQEAltQQSQEQKETLGKCLQEEMQKN 300
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE--KKKAEEA--KKAEEDKNMALRKAEEAKKAE 1590
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   301 KETLESAVKL--EKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAvQEQQRMSQEAVKAA 374
Cdd:PTZ00121 1591 EARIEEVMKLyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeekKKAEELKKA-EEENKIKAAEEAKK 1669
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 62078855   375 IAEEQRRSEKAM--EEAVKRTRDELVEYVREQRRLDQVTRQ 413
Cdd:PTZ00121 1670 AEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAEELKKK 1710
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
134-407 2.99e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.59  E-value: 2.99e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    134 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLK-----EKEQDAVSFQARYRELQEKHKQELEDMRKAGH 208
Cdd:TIGR02168  695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARleaevEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    209 EALSIIVDEyKALLQSSVKQQLDAIE--KQYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEaLTQQSQEQK 286
Cdd:TIGR02168  775 EELAEAEAE-IEELEAQIEQLKEELKalREALDELRAELTLLNEEAANLRERL-ESLERRIAATERRLED-LEEQIEELS 851
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    287 ETLGKC--LQEEMQKNKETLESAVKLEKEAmKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVA--EAIQAAVQE 362
Cdd:TIGR02168  852 EDIESLaaEIEELEELIEELESELEALLNE-RASLEEALALLRSELEELSEELRELESKRSELRRELEElrEKLAQLELR 930
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 62078855    363 QQRMSQEA--VKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRL 407
Cdd:TIGR02168  931 LEGLEVRIdnLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
 
Name Accession Description Interval E-value
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
130-442 5.31e-10

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 61.68  E-value: 5.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   130 VSNSQLRQKISSLET-KLKASEEEK----QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQaRYREL----QEKHKQEL 200
Cdd:pfam17380 284 VSERQQQEKFEKMEQeRLRQEKEEKarevERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELerirQEERKREL 362
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   201 EDMRKaghEALSIIVDEYKAL--LQ-------SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEV 262
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELerLQmerqqknERVRQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRR 439
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   263 LDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEMQKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 342
Cdd:pfam17380 440 LEEERAREMERVRLE-EQERQQQVERLRQ--QEEERKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   343 TEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELF 422
Cdd:pfam17380 510 EE-----ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVE 583
                         330       340
                  ....*....|....*....|
gi 62078855   423 LSCAQKQLSAliATEPVDIE 442
Cdd:pfam17380 584 SEKARAEYEA--TTPITTIK 601
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
175-414 4.76e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 4.76e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 175 LKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHA 254
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 255 QHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVH 334
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 335 AEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 414
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
134-409 2.14e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 56.48  E-value: 2.14e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 134 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSI 213
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELE-LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 214 IVDEYKALLQ-SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRL-----LEVLDTEKELLKEKIQEALTQQSQEQKE 287
Cdd:COG1196 322 EEELAELEEElEELEEELEELEEELEEAEEELEEAEAELAEAEEALLeaeaeLAEAEEELEELAEELLEALRAAAELAAQ 401
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 288 TLGkcLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwktEHARDQERVAEAIQAAVQEQQRMS 367
Cdd:COG1196 402 LEE--LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA---ELEEEEEALLELLAELLEEAALLE 476
                       250       260       270       280
                ....*....|....*....|....*....|....*....|..
gi 62078855 368 QEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQ 409
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
PTZ00121 PTZ00121
MAEBL; Provisional
143-413 3.81e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.84  E-value: 3.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   143 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKA-- 220
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAde 1514
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   221 LLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKEllKEKIQEAltQQSQEQKETLGKCLQEEMQKN 300
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE--KKKAEEA--KKAEEDKNMALRKAEEAKKAE 1590
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   301 KETLESAVKL--EKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAvQEQQRMSQEAVKAA 374
Cdd:PTZ00121 1591 EARIEEVMKLyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeekKKAEELKKA-EEENKIKAAEEAKK 1669
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 62078855   375 IAEEQRRSEKAM--EEAVKRTRDELVEYVREQRRLDQVTRQ 413
Cdd:PTZ00121 1670 AEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
176-437 6.25e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 51.86  E-value: 6.25e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 176 KEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEykALLQSSVKQQLDAIEKQYVSAIEKQAHrcEELLHAQ 255
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL--AELEAELEELRLELEELELELEEAQAE--EYELLAE 296
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 256 HQRLLEVLDTEKELLKEkIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHA 335
Cdd:COG1196 297 LARLEQDIARLEERRRE-LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 336 EEREMWKtEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQRS 415
Cdd:COG1196 376 EAEEELE-ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
                       250       260
                ....*....|....*....|..
gi 62078855 416 LSSLELFLSCAQKQLSALIATE 437
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLE 476
PTZ00121 PTZ00121
MAEBL; Provisional
145-414 2.16e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.52  E-value: 2.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   145 KLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQAryrelqEKHKQELEDMRKAghEALSIIVDEYKALLQS 224
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA------EEDKKKADELKKA--AAAKKKADEAKKKAEE 1429
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   225 SVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETL 304
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   305 ESAVKLEK--EAMKDVITKAVEEERENLEKVHAEEREmwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAI--AEEQR 380
Cdd:PTZ00121 1510 KKADEAKKaeEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrkAEEAK 1587
                         250       260       270
                  ....*....|....*....|....*....|....
gi 62078855   381 RSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 414
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
PTZ00121 PTZ00121
MAEBL; Provisional
143-392 6.89e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.60  E-value: 6.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   143 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQdaVSFQARYRELQEKHKQElEDMRKAGHEAlsiivDEYKALL 222
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE--LKKAEEKKKAEEAKKAE-EDKNMALRKA-----EEAKKAE 1590
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   223 QSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKE 302
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   303 TLEsavKLEKEAMKdvitKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAVQEQQRMSQEAVKAAIAEE 378
Cdd:PTZ00121 1671 EED---KKKAEEAK----KAEEDEKKAAEALKKEAEEAKKAEELKKKEaeekKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
                         250
                  ....*....|....
gi 62078855   379 QRRSEKAMEEAVKR 392
Cdd:PTZ00121 1744 KKAEEAKKDEEEKK 1757
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
133-392 1.25e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 47.62  E-value: 1.25e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 133 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALS 212
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 213 IIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKE---------KIQEALTQQSQ 283
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEeeeeeealeEAAEEEAELEE 456
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 284 EQKETlgkcLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARD-QERVAEAIQAAVQE 362
Cdd:COG1196 457 EEEAL----LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAgLRGLAGAVAVLIGV 532
                       250       260       270
                ....*....|....*....|....*....|
gi 62078855 363 QQRMSQEAVKAAIAEEQRRSEKAMEEAVKR 392
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAA 562
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
133-374 2.46e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.30  E-value: 2.46e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 133 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALS 212
Cdd:COG4942  30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 213 IIVDEYKALLQSSVKQQLDAiekQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELlkEKIQEALTQQSQEQKEtlgkc 292
Cdd:COG4942 109 LLRALYRLGRQPPLALLLSP---EDFLDAVRRLQYLKYLAPARREQAEELRADLAEL--AALRAELEAERAELEA----- 178
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 293 LQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMwktehardQERVAEAIQAAVQEQQRMSQEAVK 372
Cdd:COG4942 179 LLAELEEERAALEALKA-ERQKLLARLEKELAELAAELAELQQEAEEL--------EALIARLEAEAAAAAERTPAAGFA 249

                ..
gi 62078855 373 AA 374
Cdd:COG4942 250 AL 251
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
134-407 2.99e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.59  E-value: 2.99e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    134 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLK-----EKEQDAVSFQARYRELQEKHKQELEDMRKAGH 208
Cdd:TIGR02168  695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARleaevEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    209 EALSIIVDEyKALLQSSVKQQLDAIE--KQYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEaLTQQSQEQK 286
Cdd:TIGR02168  775 EELAEAEAE-IEELEAQIEQLKEELKalREALDELRAELTLLNEEAANLRERL-ESLERRIAATERRLED-LEEQIEELS 851
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    287 ETLGKC--LQEEMQKNKETLESAVKLEKEAmKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVA--EAIQAAVQE 362
Cdd:TIGR02168  852 EDIESLaaEIEELEELIEELESELEALLNE-RASLEEALALLRSELEELSEELRELESKRSELRRELEElrEKLAQLELR 930
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 62078855    363 QQRMSQEA--VKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRL 407
Cdd:TIGR02168  931 LEGLEVRIdnLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
137-391 3.23e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.59  E-value: 3.23e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    137 QKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKD--FLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEalsii 214
Cdd:TIGR02168  267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqILRERLANLERQLEELEAQLEELESKLDELAEELAE----- 341
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    215 VDEYKALLQSSVKQQLDAIEKQyvSAIEKQAHRCEELLHAQHQRLlevldtEKELLKEKIQEALTQQSQEQKETLGKCLQ 294
Cdd:TIGR02168  342 LEEKLEELKEELESLEAELEEL--EAELEELESRLEELEEQLETL------RSKVAQLELQIASLNNEIERLEARLERLE 413
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    295 EEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAA 374
Cdd:TIGR02168  414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAERELAQLQARLD 492
                          250
                   ....*....|....*..
gi 62078855    375 IAEEQRRSEKAMEEAVK 391
Cdd:TIGR02168  493 SLERLQENLEGFSEGVK 509
PTZ00121 PTZ00121
MAEBL; Provisional
143-409 4.94e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.90  E-value: 4.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   143 ETKLKASEEEK--QRIKKDVESLMEK-HSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYK 219
Cdd:PTZ00121 1312 EEAKKADEAKKkaEEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   220 ALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLH-AQHQRLLEVLDTEKEllKEKIQEALTQQSQEQKEtlGKCLQEEMQ 298
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKkAEEKKKADEAKKKAE--EAKKADEAKKKAEEAKK--AEEAKKKAE 1467
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   299 KNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKaaiAEE 378
Cdd:PTZ00121 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK---AEE 1544
                         250       260       270
                  ....*....|....*....|....*....|.
gi 62078855   379 QRRSEKaMEEAVKRTRDELVEYVREQRRLDQ 409
Cdd:PTZ00121 1545 KKKADE-LKKAEELKKAEEKKKAEEAKKAEE 1574
PTZ00121 PTZ00121
MAEBL; Provisional
147-392 4.98e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.90  E-value: 4.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   147 KASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKallqssv 226
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK------- 1613
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   227 KQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLES 306
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   307 AVKLEKEAMK-DVITKAVEEERENLEKVH-AEEREMWKTEHARDQE----RVAEAIQAAVQEQQRMSQEAVKAAIAEEQR 380
Cdd:PTZ00121 1694 LKKEAEEAKKaEELKKKEAEEKKKAEELKkAEEENKIKAEEAKKEAeedkKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
                         250
                  ....*....|....
gi 62078855   381 RSEK--AMEEAVKR 392
Cdd:PTZ00121 1774 RKEKeaVIEEELDE 1787
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
131-336 9.31e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 45.01  E-value: 9.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   131 SNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDflkekeqdavsfQARYRELQEKHKQELEDMRKAGHeA 210
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE------------IERLKETIIKNNSEIKDLTNQDS-V 451
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   211 LSIIVDEYKAlLQSSVKQQLDAIEKQYVSAIEKQAHRCEELlhAQHQRLLEVLDTEKELLKEKIQEaLTQQSQEQKETLG 290
Cdd:TIGR04523 452 KELIIKNLDN-TRESLETQLKVLSRSINKIKQNLEQKQKEL--KSKEKELKKLNEEKKELEEKVKD-LTKKISSLKEKIE 527
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 62078855   291 KCLQEEMQKNKETLESAVKLEK---EAMKDVITKAVEEERENLEKVHAE 336
Cdd:TIGR04523 528 KLESEKKEKESKISDLEDELNKddfELKKENLEKEIDEKNKEIEELKQT 576
PTZ00121 PTZ00121
MAEBL; Provisional
143-406 1.25e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.75  E-value: 1.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   143 ETKLKASEEEK-QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQE----LEDMRKAGHEALSIIVDE 217
Cdd:PTZ00121 1474 EAKKKAEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEeakkADEAKKAEEKKKADELKK 1553
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   218 YKALLQSSVKQQLDAIEKQYVSAiEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEAltqqsqeQKETLGKCLQEEM 297
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDK-NMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA-------KKAEEAKIKAEEL 1625
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   298 QKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHA------EEREMWKTEHAR--DQERVAEAIQAAVQEQQRMSQE 369
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaeeakkAEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAE 1705
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 62078855   370 AVKAAIAEEQRRSE--KAMEEAVKRTRDELVEYVREQRR 406
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEelKKAEEENKIKAEEAKKEAEEDKK 1744
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
134-372 1.59e-04

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 44.06  E-value: 1.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    134 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAV---SFQARYRELQEKHKQELEDMRK--AGH 208
Cdd:pfam12128  298 QWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEqlpSWQSELENLEERLKALTGKHQDvtAKY 377
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    209 EALSIIVDEYKALLQSSVKQQLDAIEKqyvsAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEkiqealtqqsqEQKET 288
Cdd:pfam12128  378 NRRRSKIKEQNNRDIAGIKDKLAKIRE----ARDRQLAVAEDDLQALESELREQLEAGKLEFNE-----------EEYRL 442
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    289 LGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQ 368
Cdd:pfam12128  443 KSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSAL 522

                   ....
gi 62078855    369 EAVK 372
Cdd:pfam12128  523 DELE 526
PTZ00121 PTZ00121
MAEBL; Provisional
127-437 3.44e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.21  E-value: 3.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   127 GVHVSNSQLRQKISSLEtKLKASEEEKQRIKKdvESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKA 206
Cdd:PTZ00121 1054 GNHEGKAEAKAHVGQDE-GLKPSYKDFDFDAK--EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA 1130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   207 GHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLK----EKIQEALTQQS 282
Cdd:PTZ00121 1131 EEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKaedaRKAEAARKAEE 1210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   283 QEQKETLGKCLQEEMQKNKETLESAVKLEKEAmkdvitKAVEEERENLEKVHAEEREMW---------KTEHARDQERVA 353
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA------KKAEEERNNEEIRKFEEARMAhfarrqaaiKAEEARKADELK 1284
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   354 EAIQAAVQEQQRMSQEAVKA----AIAEEQRRSEKAMEEA--VKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQ 427
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKKAdeakKKAEEAKKADEAKKKAeeAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
                         330
                  ....*....|
gi 62078855   428 KQLSALIATE 437
Cdd:PTZ00121 1365 KAEAAEKKKE 1374
PTZ00121 PTZ00121
MAEBL; Provisional
194-413 4.12e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 4.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   194 EKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQyvsaiekQAHRCEELLHAQHQRLLEVLDTEKEL---- 269
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE-------EARKADELKKAEEKKKADEAKKAEEKkkad 1305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   270 -LKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLE---SAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEH 345
Cdd:PTZ00121 1306 eAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62078855   346 ARDQERVAEAIQAAVQEQQRMSQEAVKAAiaEEQRRSEKAMEEA-VKRTRDELVEYVREQRRLDQVTRQ 413
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKADELKKAA--AAKKKADEAKKKAeEKKKADEAKKKAEEAKKADEAKKK 1452
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
133-379 4.85e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.12  E-value: 4.85e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 133 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKagheals 212
Cdd:COG3883  19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-LEALQAEIDKLQAEIAEAEAEIEERREELGE------- 90
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 213 IIVDEYKALLQSSVKQQL-------DAIEKqyVSAIEKqahrceelLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQ 285
Cdd:COG3883  91 RARALYRSGGSVSYLDVLlgsesfsDFLDR--LSALSK--------IADADADLLEELKADKAELEAKKAELEAKLAELE 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855 286 KetlgkcLQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQR 365
Cdd:COG3883 161 A------LKAELEAAKAELEAQQA-EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
                       250
                ....*....|....
gi 62078855 366 MSQEAVKAAIAEEQ 379
Cdd:COG3883 234 AAAAAAAAAAASAA 247
mukB PRK04863
chromosome partition protein MukB;
89-307 9.84e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.87  E-value: 9.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    89 VQLQQSAHTHLNIPLfplgltdeSNHGALALEDEPEgpgvhVSNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHS 168
Cdd:PRK04863  809 VQKLQRLHQAFSRFI--------GSHLAVAFEADPE-----AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   169 VLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRK-AGHEALSIIVDEYKALLQSSvKQQLDAIEKQYVSAIEKQA-- 245
Cdd:PRK04863  876 ALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFvQQHGNALAQLEPIVSVLQSD-PEQFEQLKQDYQQAQQTQRda 954
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 62078855   246 -----------HRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSqEQKETLgKCLQEEMQKNKETLESA 307
Cdd:PRK04863  955 kqqafaltevvQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERT-RAREQL-RQAQAQLAQYNQVLASL 1025
PTZ00121 PTZ00121
MAEBL; Provisional
143-429 1.37e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 1.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   143 ETKLKASEEEKQRIK-KDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAghEALSIIVDEYKAL 221
Cdd:PTZ00121 1395 EAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA--EEAKKKAEEAKKA 1472
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   222 LQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEALTQQSQEQKETLGKClqEEMQKNK 301
Cdd:PTZ00121 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK-KADEAKKAEEAKKADEAKKAEEAKKADEAKKA--EEKKKAD 1549
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   302 ETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREmwKTEHARDQErvaeaIQAAVQEQQRMSQEAVKAAIAEEQRR 381
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK--KAEEARIEE-----VMKLYEEEKKMKAEEAKKAEEAKIKA 1622
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 62078855   382 SEKAMEEAVKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQKQ 429
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
214-389 1.45e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 40.56  E-value: 1.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855  214 IVDEYKALlQSSVKQQLDAiEKQYVSAIEKQAHRCEELLHAQHQRLLEVldtEKELLKEkiQEALTQQSQEQKETLGKCL 293
Cdd:PRK09510  60 VVEQYNRQ-QQQQKSAKRA-EEQRKKKEQQQAEELQQKQAAEQERLKQL---EKERLAA--QEQKKQAEEAAKQAALKQK 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855  294 QEEMQKNKETLESAVKLEKEAMK-DVITKAVEEERENLE----KVHAEEREMWKTEHARDQERVAEAIQAAVQE-QQRMS 367
Cdd:PRK09510 133 QAEEAAAKAAAAAKAKAEAEAKRaAAAAKKAAAEAKKKAeaeaAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEaKKKAA 212
                        170       180
                 ....*....|....*....|..
gi 62078855  368 QEAVKAAIAEEQRRSEKAMEEA 389
Cdd:PRK09510 213 AEAKKKAAAEAKAAAAKAAAEA 234
Nup88 pfam10168
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ...
169-333 5.99e-03

Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.


Pssm-ID: 462975 [Multi-domain]  Cd Length: 713  Bit Score: 38.87  E-value: 5.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   169 VLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDM------RKAGHEALSIIVDEYKallqssvkqqlDAIEKQyvsaiE 242
Cdd:pfam10168 543 VFREEYLKKHDLAREEIQKRVKLLKLQKEQQLQELqsleeeRKSLSERAEKLAEKYE-----------EIKDKQ-----E 606
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   243 KQAHRCEELLHAQHQRLLEVLDTEKELLKEkiqealTQQSQEQKETLGKCLQE----------EMQKNKETLE-SAVKL- 310
Cdd:pfam10168 607 KLMRRCKKVLQRLNSQLPVLSDAEREMKKE------LETINEQLKHLANAIKQakkkmnyqryQIAKSQSIRKkSSLSLs 680
                         170       180
                  ....*....|....*....|....*
gi 62078855   311 --EKEAMKDVITKAVEEERENLEKV 333
Cdd:pfam10168 681 ekQRKTIKEILKQLGSEIDELIKQV 705
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
134-342 6.28e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.27  E-value: 6.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    134 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKhsvlekdfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSI 213
Cdd:TIGR02168  327 ELESKLDELAEELAELEEKLEELKEELESLEAE--------LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    214 ivdeykALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEkiqealTQQSQEQKETLGKCL 293
Cdd:TIGR02168  399 ------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE------LQEELERLEEALEEL 466
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 62078855    294 QEEMQKNKETLESAvkLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 342
Cdd:TIGR02168  467 REELEEAEQALDAA--ERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
136-307 6.29e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.13  E-value: 6.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855  136 RQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEK--------DFLKEKEQDAVSFQARYRELQekhkQELEDMRKAG 207
Cdd:COG4913  609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQErrealqrlAEYSWDEIDVASAEREIAELE----AELERLDASS 684
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855  208 HE--ALSIIVDEYKALLQSSVKQQLDAIEKQyvSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQ 285
Cdd:COG4913  685 DDlaALEEQLEELEAELEELEEELDELKGEI--GRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
                        170       180
                 ....*....|....*....|...
gi 62078855  286 KE-TLGKCLQEEMQKNKETLESA 307
Cdd:COG4913  763 VErELRENLEERIDALRARLNRA 785
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
134-377 7.14e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 38.90  E-value: 7.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    134 QLRQKISSLETKLKA-SEEEKQRIKKDVESLMEKHSVLEK--DFLKEKEQDAVSFQARYRELQEKHKQELEDMR------ 204
Cdd:TIGR02169  269 EIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERsiAEKERELEDAEERLAKLEAEIDKLLAEIEELEreieee 348
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    205 KAGHEALSIIVDEYKALLQSSVkQQLDAIE----------KQYVSAIEKQAHRCEELLHAQH--QRLLEVLDTEKELLKE 272
Cdd:TIGR02169  349 RKRRDKLTEEYAELKEELEDLR-AELEEVDkefaetrdelKDYREKLEKLKREINELKRELDrlQEELQRLSEELADLNA 427
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    273 KIQEALTQQSQEQKETlgKCLQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERV 352
Cdd:TIGR02169  428 AIAGIEAKINELEEEK--EDKALEIKKQEWKLEQLAA-DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
                          250       260
                   ....*....|....*....|....*
gi 62078855    353 AEAIQAAVQEQQRMSQEAVKAAIAE 377
Cdd:TIGR02169  505 RVRGGRAVEEVLKASIQGVHGTVAQ 529
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
135-414 7.21e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 38.88  E-value: 7.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    135 LRQKISSLETKLKASEEEKqRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELedmrKAGHEALSII 214
Cdd:TIGR02168  198 LERQLKSLERQAEKAERYK-ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAEL----QELEEKLEEL 272
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    215 VDEykallQSSVKQQLDAIEKQYVSAIEKQAhRCEELLHAQHQRLLEVLDTEKELlkEKIQEALTQQSQEQKETLG--KC 292
Cdd:TIGR02168  273 RLE-----VSELEEEIEELQKELYALANEIS-RLEQQKQILRERLANLERQLEEL--EAQLEELESKLDELAEELAelEE 344
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855    293 LQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHA---------RDQERVAEAIQAAVQEQ 363
Cdd:TIGR02168  345 KLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASlnneierleARLERLEDRRERLQQEI 423
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 62078855    364 QRMSQEAVKAAIAEEQRRS---EKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 414
Cdd:TIGR02168  424 EELLKKLEEAELKELQAELeelEEELEELQEELERLEEALEELREELEEAEQAL 477
DUF4670 pfam15709
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ...
257-413 9.03e-03

Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.


Pssm-ID: 464815 [Multi-domain]  Cd Length: 522  Bit Score: 38.39  E-value: 9.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   257 QRLLEVldtEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKEtlesAVKLEKEAMkdvitkavEEERENLEKVHAE 336
Cdd:pfam15709 345 MRRLEV---ERKRREQEEQRRLQQEQLERAEKMREELELEQQRRFE----EIRLRKQRL--------EEERQRQEEEERK 409
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   337 EREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTR------DELVEYVREQRRLDQV 410
Cdd:pfam15709 410 QRLQLQAAQERARQQQEEFRRKLQELQRKKQQEEAERAEAEKQRQKELEMQLAEEQKRlmemaeEERLEYQRQKQEAEEK 489

                  ...
gi 62078855   411 TRQ 413
Cdd:pfam15709 490 ARL 492
PTZ00121 PTZ00121
MAEBL; Provisional
143-317 9.94e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 38.58  E-value: 9.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   143 ETKLKASEEEK-QRIKKDVESLMEKHsvlEKDFLKEKEQDAVSFQARYRELQEKHKQElEDMRKAgHEALSIIVDEYKAL 221
Cdd:PTZ00121 1617 EAKIKAEELKKaEEEKKKVEQLKKKE---AEEKKKAEELKKAEEENKIKAAEEAKKAE-EDKKKA-EEAKKAEEDEKKAA 1691
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078855   222 LQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNK 301
Cdd:PTZ00121 1692 EALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
                         170
                  ....*....|....*.
gi 62078855   302 ETLESAVKLEKEAMKD 317
Cdd:PTZ00121 1772 EIRKEKEAVIEEELDE 1787
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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