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Conserved domains on  [gi|62078831|ref|NP_001014071|]
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protein sel-1 homolog 2 precursor [Rattus norvegicus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11434433)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
282-476 4.66e-46

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 163.95  E-value: 4.66e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 282 WDIYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYLEGNAAaPQNNATAFKY 361
Cdd:COG0790  48 AAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGV-PQDYAKALEW 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 362 FSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFHLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:COG0790 126 YEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205

                       170       180       190
                ....*....|....*....|....*....|....*
gi 62078831 442 QPLAIYYLAEMYATGTGVLRSCRTAVEPYKGVCEL 476
Cdd:COG0790 206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
124-331 2.70e-18

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 84.59  E-value: 2.70e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 124 QKQKTEAYTFFTRAADMGNLKAMEKMADALLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKAL 203
Cdd:COG0790  80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 204 IYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVAlnhykkvadyiadkleksegipvekvrlterpenlssnseildwd 283
Cdd:COG0790 160 EWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKA--------------------------------------------- 194

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 62078831 284 iYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKA 331
Cdd:COG0790 195 -LEWYRKAAEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 588-620 2.53e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


:

Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.47  E-value: 2.53e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 62078831    588 AQAMFNLAYMYEHGLGIAQDIHLARRLYDMAAQ 620
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
TPR super family cl34042
TPR repeat [General function prediction only];
531-620 4.98e-05

TPR repeat [General function prediction only];


The actual alignment was detected with superfamily member COG0790:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 45.30  E-value: 4.98e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 531 KEKMYPMALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHHSAQAMFNLAYMYEHGLGIAQDIHL 610
Cdd:COG0790   6 AAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEK 85

                        90
                ....*....|
gi 62078831 611 ARRLYDMAAQ 620
Cdd:COG0790  86 ALEWFEKAAE 95
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
282-476 4.66e-46

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 163.95  E-value: 4.66e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 282 WDIYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYLEGNAAaPQNNATAFKY 361
Cdd:COG0790  48 AAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGV-PQDYAKALEW 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 362 FSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFHLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:COG0790 126 YEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205

                       170       180       190
                ....*....|....*....|....*....|....*
gi 62078831 442 QPLAIYYLAEMYATGTGVLRSCRTAVEPYKGVCEL 476
Cdd:COG0790 206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
124-331 2.70e-18

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 84.59  E-value: 2.70e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 124 QKQKTEAYTFFTRAADMGNLKAMEKMADALLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKAL 203
Cdd:COG0790  80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 204 IYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVAlnhykkvadyiadkleksegipvekvrlterpenlssnseildwd 283
Cdd:COG0790 160 EWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKA--------------------------------------------- 194

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 62078831 284 iYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKA 331
Cdd:COG0790 195 -LEWYRKAAEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 407-441 1.92e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.86  E-value: 1.92e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 62078831    407 PNAQFHLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 588-620 2.53e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.47  E-value: 2.53e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 62078831    588 AQAMFNLAYMYEHGLGIAQDIHLARRLYDMAAQ 620
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 371-405 4.00e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.66  E-value: 4.00e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 62078831   371 AIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKG 405
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 588-620 5.01e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.66  E-value: 5.01e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 62078831   588 AQAMFNLAYMYEHGLGIAQDIHLARRLYDMAAQ 620
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAE 33
TPR COG0790
TPR repeat [General function prediction only];
531-620 4.98e-05

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 45.30  E-value: 4.98e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 531 KEKMYPMALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHHSAQAMFNLAYMYEHGLGIAQDIHL 610
Cdd:COG0790   6 AAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEK 85

                        90
                ....*....|
gi 62078831 611 ARRLYDMAAQ 620
Cdd:COG0790  86 ALEWFEKAAE 95
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 551-586 1.56e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 36.38  E-value: 1.56e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 62078831    551 AFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHH 586
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
282-476 4.66e-46

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 163.95  E-value: 4.66e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 282 WDIYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYLEGNAAaPQNNATAFKY 361
Cdd:COG0790  48 AAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGV-PQDYAKALEW 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 362 FSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFHLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:COG0790 126 YEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205

                       170       180       190
                ....*....|....*....|....*....|....*
gi 62078831 442 QPLAIYYLAEMYATGTGVLRSCRTAVEPYKGVCEL 476
Cdd:COG0790 206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
321-620 1.34e-37

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 140.45  E-value: 1.34e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 321 ALYYFLKAAKAGSANAMAFIGKMYLEGNAAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQK 400
Cdd:COG0790  13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 401 AAEKGWPNAQFHLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVEPYKgvcelghwa 480
Cdd:COG0790  93 AAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYR--------- 163

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 481 ekfltayfaykdgdvdssliqyallaemgyevaqsnsafileskkakilgkekmypmalllwnRAAIQGNAFARVKIGDY 560
Cdd:COG0790 164 ---------------------------------------------------------------KAAEQGDADAQYNLGVL 180

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 561 HYYGYGTKKDYETAATHYSIAADKHHsAQAMFNLAYMYEHGLGIAQDIHLARRLYDMAAQ 620
Cdd:COG0790 181 YENGRGVPKDPAKALEWYRKAAEQGD-ADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAE 239
TPR COG0790
TPR repeat [General function prediction only];
316-478 7.74e-37

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 138.14  E-value: 7.74e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 316 QDYSKALYYFLKAAKAGSANAMAFIGKMYLEGNAAaPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEAL 395
Cdd:COG0790  45 AGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGV-PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKAL 123

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 396 KYFQKAAEKGWPNAQFHLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVEPYKGVCE 475
Cdd:COG0790 124 EWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAE 203


                ...
gi 62078831 476 LGH 478
Cdd:COG0790 204 QGD 206
TPR COG0790
TPR repeat [General function prediction only];
129-437 4.71e-32

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 124.66  E-value: 4.71e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 129 EAYTFFTRAADMGNLKAMEKMADALLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKALIYYTF 208
Cdd:COG0790  13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 209 GSAGGSMMSQMILGYRYLSGinvlqncevalnhykkvadyiadkleksegipvekvrlterpenlssnseildwdiyqyy 288
Cdd:COG0790  93 AAEQGDAEAQYNLGLMYEEG------------------------------------------------------------ 112

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 289 kflaergdvqiqvslgqlhligrKGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYLEGNaAAPQNNATAFKYFSMAASK 368
Cdd:COG0790 113 -----------------------LGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGE-GVPKDPAKAAEWYRKAAEQ 168

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62078831 369 GNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFHLGFMYYSGSGVWKDYKLAFKYFYLA 437
Cdd:COG0790 169 GDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKA 237
TPR COG0790
TPR repeat [General function prediction only];
124-331 2.70e-18

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 84.59  E-value: 2.70e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 124 QKQKTEAYTFFTRAADMGNLKAMEKMADALLFGSFGMQNITAAIQLYESLAKEGSYKAQNALGFLSSYGIGMEYDQAKAL 203
Cdd:COG0790  80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 204 IYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVAlnhykkvadyiadkleksegipvekvrlterpenlssnseildwd 283
Cdd:COG0790 160 EWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKA--------------------------------------------- 194

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 62078831 284 iYQYYKFLAERGDVQIQVSLGQLHLIGRkGLDQDYSKALYYFLKAAKA 331
Cdd:COG0790 195 -LEWYRKAAEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 407-441 1.92e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.86  E-value: 1.92e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 62078831    407 PNAQFHLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 588-620 2.53e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.47  E-value: 2.53e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 62078831    588 AQAMFNLAYMYEHGLGIAQDIHLARRLYDMAAQ 620
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAE 33
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 371-405 4.00e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.66  E-value: 4.00e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 62078831   371 AIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKG 405
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 588-620 5.01e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.66  E-value: 5.01e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 62078831   588 AQAMFNLAYMYEHGLGIAQDIHLARRLYDMAAQ 620
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAE 33
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 371-405 1.37e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.16  E-value: 1.37e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 62078831    371 AIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKG 405
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
TPR COG0790
TPR repeat [General function prediction only];
531-620 4.98e-05

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 45.30  E-value: 4.98e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62078831 531 KEKMYPMALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHHSAQAMFNLAYMYEHGLGIAQDIHL 610
Cdd:COG0790   6 AAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEK 85

                        90
                ....*....|
gi 62078831 611 ARRLYDMAAQ 620
Cdd:COG0790  86 ALEWFEKAAE 95
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 407-441 4.87e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 37.89  E-value: 4.87e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 62078831   407 PNAQFHLGFMYYSGSGVWKDYKLAFKYFYLASQSG 441
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 551-586 1.56e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 36.38  E-value: 1.56e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 62078831    551 AFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHH 586
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 443-478 2.10e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 36.00  E-value: 2.10e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 62078831    443 PLAIYYLAEMYATGTGVLRSCRTAVEPYKGVCELGH 478
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 300-332 9.60e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 34.42  E-value: 9.60e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 62078831   300 QVSLGQLHLIGrKGLDQDYSKALYYFLKAAKAG 332
Cdd:pfam08238   4 QYRLGYLYLYG-LGVPKDPEKALEWYEKAAELG 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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