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Conserved domains on  [gi|55741479|ref|NP_001006966|]
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large ribosomal subunit protein bL34m [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
49-90 2.17e-11

Ribosomal protein L34;


:

Pssm-ID: 425699  Cd Length: 42  Bit Score: 53.16  E-value: 2.17e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 55741479   49 GNEYQPSNIKRKHKHGWVRRLSTPAGVQVILRRMLKGRKSLS 90
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
 
Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
49-90 2.17e-11

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 53.16  E-value: 2.17e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 55741479   49 GNEYQPSNIKRKHKHGWVRRLSTPAGVQVILRRMLKGRKSLS 90
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 52-90 6.25e-09

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 47.01  E-value: 6.25e-09
                       10        20        30
               ....*....|....*....|....*....|....*....
gi 55741479 52 YQPSNIKRKHKHGWVRRLSTPAGVQVILRRMLKGRKSLS 90
Cdd:COG0230  5 YQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLT 43
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 52-90 2.59e-05

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 37.88  E-value: 2.59e-05
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 55741479   52 YQPSNIKRKHKHGWVRRLSTPAGVQVILRRMLKGRKSLS 90
Cdd:TIGR01030  5 YQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLT 43
 
Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
49-90 2.17e-11

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 53.16  E-value: 2.17e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 55741479   49 GNEYQPSNIKRKHKHGWVRRLSTPAGVQVILRRMLKGRKSLS 90
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 52-90 6.25e-09

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 47.01  E-value: 6.25e-09
                       10        20        30
               ....*....|....*....|....*....|....*....
gi 55741479 52 YQPSNIKRKHKHGWVRRLSTPAGVQVILRRMLKGRKSLS 90
Cdd:COG0230  5 YQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLT 43
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 52-90 2.59e-05

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 37.88  E-value: 2.59e-05
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 55741479   52 YQPSNIKRKHKHGWVRRLSTPAGVQVILRRMLKGRKSLS 90
Cdd:TIGR01030  5 YQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLT 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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