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Conserved domains on  [gi|51092301|ref|NP_001003670|]
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type II keratin Kb14 [Mus musculus]

Protein Classification

type II keratin( domain architecture ID 12177255)

type II keratin is an intermediate filament-forming protein that provides mechanical support and fulfills a variety of additional functions in epithelial cells

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
151-464 9.76e-130

Intermediate filament protein;


:

Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 381.19  E-value: 9.76e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   151 EEREQIKTLNNRFASFIDKVQFLEQQNKVLDTKWALLQEQGTKTVKPeVETLFEDYINILSRRLGFTVAEKGHLDAELRR 230
Cdd:pfam00038   1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSR-LYSLYEKEIEDLRRQLDTLTVERARLQLELDN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   231 SQGVLEDYKYKYEDEISKRTAAENEFLTLKKDADAAFMIENELTAKVHSLIDEINFLRTLFDAEMSQMQTPLSDTSVIIS 310
Cdd:pfam00038  80 LRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   311 MDNNHSLDMESIIAEVKTQYENIAKKSQAEAESWYQTKYEELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQ 390
Cdd:pfam00038 160 MDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQ 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51092301   391 CANLQAAIADAEQRGEMALKDARGKLEGLKDAPQKAKQDRTRLQKEYQELLSVNIYLDVEITTYRKLLEGEENR 464
Cdd:pfam00038 240 KASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
Keratin_2_head pfam16208
Keratin type II head;
15-148 6.93e-27

Keratin type II head;


:

Pssm-ID: 465068 [Multi-domain]  Cd Length: 156  Bit Score: 106.28  E-value: 6.93e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    15 GSSASSARVPGLNHSGFSCVSLCQSRGISGSGPMCRVASFGSRSLYSEGSSKRISIGGSSCGNREFYGRHY--------- 85
Cdd:pfam16208   1 GFSSCSAVVPSRSRRSYSSVSSSRRGGGGGGGGGGGGGGFGSRSLYNLGGSKSISISVAGGGSRPGSGFGFgggggggfg 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 51092301    86 -------------GGDLGIGRGACGCFGFGAGAGFGDGYGGAGFPGYPSGGIQEVTISQSLLIPLNLQIDPTIQRV 148
Cdd:pfam16208  81 ggfgggggggfggGGGFGGGFGGGGYGGGGFGGGGFGGRGGFGGPPCPPGGIQEVTVNQSLLQPLNLEIDPEIQRV 156
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
151-464 9.76e-130

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 381.19  E-value: 9.76e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   151 EEREQIKTLNNRFASFIDKVQFLEQQNKVLDTKWALLQEQGTKTVKPeVETLFEDYINILSRRLGFTVAEKGHLDAELRR 230
Cdd:pfam00038   1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSR-LYSLYEKEIEDLRRQLDTLTVERARLQLELDN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   231 SQGVLEDYKYKYEDEISKRTAAENEFLTLKKDADAAFMIENELTAKVHSLIDEINFLRTLFDAEMSQMQTPLSDTSVIIS 310
Cdd:pfam00038  80 LRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   311 MDNNHSLDMESIIAEVKTQYENIAKKSQAEAESWYQTKYEELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQ 390
Cdd:pfam00038 160 MDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQ 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51092301   391 CANLQAAIADAEQRGEMALKDARGKLEGLKDAPQKAKQDRTRLQKEYQELLSVNIYLDVEITTYRKLLEGEENR 464
Cdd:pfam00038 240 KASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
Keratin_2_head pfam16208
Keratin type II head;
15-148 6.93e-27

Keratin type II head;


Pssm-ID: 465068 [Multi-domain]  Cd Length: 156  Bit Score: 106.28  E-value: 6.93e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    15 GSSASSARVPGLNHSGFSCVSLCQSRGISGSGPMCRVASFGSRSLYSEGSSKRISIGGSSCGNREFYGRHY--------- 85
Cdd:pfam16208   1 GFSSCSAVVPSRSRRSYSSVSSSRRGGGGGGGGGGGGGGFGSRSLYNLGGSKSISISVAGGGSRPGSGFGFgggggggfg 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 51092301    86 -------------GGDLGIGRGACGCFGFGAGAGFGDGYGGAGFPGYPSGGIQEVTISQSLLIPLNLQIDPTIQRV 148
Cdd:pfam16208  81 ggfgggggggfggGGGFGGGFGGGGYGGGGFGGGGFGGRGGFGGPPCPPGGIQEVTVNQSLLQPLNLEIDPEIQRV 156
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
320-468 2.91e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.44  E-value: 2.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    320 ESIIAEVKTQYENIAKKSQAEAESWYQTKYE--ELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAA 397
Cdd:TIGR02168  245 QEELKEAEEELEELTAELQELEEKLEELRLEvsELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 51092301    398 IADAEQRGEMA---LKDARGKLEGLKDAPQKAKQDRTRLQKEYQELLSVNIYLDVEITTYRK---LLEGEENRFNGE 468
Cdd:TIGR02168  325 LEELESKLDELaeeLAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSkvaQLELQIASLNNE 401
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
362-441 2.12e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.07  E-value: 2.12e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 362 DLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQR---GEMALKDARGKLEGLKDAPQKAKQDRTRLQKEYQ 438
Cdd:COG4942  28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRiraLEQELAALEAELAELEKEIAELRAELEAQKEELA 107

                ...
gi 51092301 439 ELL 441
Cdd:COG4942 108 ELL 110
PRK01156 PRK01156
chromosome segregation protein; Provisional
141-462 8.01e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 45.66  E-value: 8.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  141 IDPT-IQRVRTEEREQIKTLNNRFASFIDKVQFLEQQNKVLDTKWALLQEQ------GTKTVKPEVETLFEDYINILSR- 212
Cdd:PRK01156 402 IDPDaIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcGTTLGEEKSNHIINHYNEKKSRl 481
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  213 --RLGFTVAEKGHLDAElRRSQGVLEDYKYKyeDEISKRTAAENEFLTLKKDADAAFMIENELTAKVHSLIDEINFLRTL 290
Cdd:PRK01156 482 eeKIREIEIEVKDIDEK-IVDLKKRKEYLES--EEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSL 558
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  291 FDAEMSQMQTPLSDTSVIISmdnnhSLDMESIIA---EVKTQYENIAKKSQaEAESWYQTKYEELQVTAGRHGDD---LR 364
Cdd:PRK01156 559 KLEDLDSKRTSWLNALAVIS-----LIDIETNRSrsnEIKKQLNDLESRLQ-EIEIGFPDDKSYIDKSIREIENEannLN 632
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  365 NTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALkDARGKLEGLKDAPQKAKQDRTRLQKEYQELLSVN 444
Cdd:PRK01156 633 NKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRIN-DIEDNLKKSRKALDDAKANRARLESTIEILRTRI 711
                        330
                 ....*....|....*...
gi 51092301  445 IYLDVEITTYRKLLEGEE 462
Cdd:PRK01156 712 NELSDRINDINETLESMK 729
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
151-464 9.76e-130

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 381.19  E-value: 9.76e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   151 EEREQIKTLNNRFASFIDKVQFLEQQNKVLDTKWALLQEQGTKTVKPeVETLFEDYINILSRRLGFTVAEKGHLDAELRR 230
Cdd:pfam00038   1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSR-LYSLYEKEIEDLRRQLDTLTVERARLQLELDN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   231 SQGVLEDYKYKYEDEISKRTAAENEFLTLKKDADAAFMIENELTAKVHSLIDEINFLRTLFDAEMSQMQTPLSDTSVIIS 310
Cdd:pfam00038  80 LRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   311 MDNNHSLDMESIIAEVKTQYENIAKKSQAEAESWYQTKYEELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQ 390
Cdd:pfam00038 160 MDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQ 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51092301   391 CANLQAAIADAEQRGEMALKDARGKLEGLKDAPQKAKQDRTRLQKEYQELLSVNIYLDVEITTYRKLLEGEENR 464
Cdd:pfam00038 240 KASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
Keratin_2_head pfam16208
Keratin type II head;
15-148 6.93e-27

Keratin type II head;


Pssm-ID: 465068 [Multi-domain]  Cd Length: 156  Bit Score: 106.28  E-value: 6.93e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    15 GSSASSARVPGLNHSGFSCVSLCQSRGISGSGPMCRVASFGSRSLYSEGSSKRISIGGSSCGNREFYGRHY--------- 85
Cdd:pfam16208   1 GFSSCSAVVPSRSRRSYSSVSSSRRGGGGGGGGGGGGGGFGSRSLYNLGGSKSISISVAGGGSRPGSGFGFgggggggfg 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 51092301    86 -------------GGDLGIGRGACGCFGFGAGAGFGDGYGGAGFPGYPSGGIQEVTISQSLLIPLNLQIDPTIQRV 148
Cdd:pfam16208  81 ggfgggggggfggGGGFGGGFGGGGYGGGGFGGGGFGGRGGFGGPPCPPGGIQEVTVNQSLLQPLNLEIDPEIQRV 156
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
320-468 2.91e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.44  E-value: 2.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    320 ESIIAEVKTQYENIAKKSQAEAESWYQTKYE--ELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAA 397
Cdd:TIGR02168  245 QEELKEAEEELEELTAELQELEEKLEELRLEvsELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 51092301    398 IADAEQRGEMA---LKDARGKLEGLKDAPQKAKQDRTRLQKEYQELLSVNIYLDVEITTYRK---LLEGEENRFNGE 468
Cdd:TIGR02168  325 LEELESKLDELaeeLAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSkvaQLELQIASLNNE 401
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
140-440 3.39e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 50.07  E-value: 3.39e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    140 QIDPTIQRVRtEEREQIKTLNNRFASFIDKVqfLEQQNKVLDTKWALLQEQGTKTVKPEVEtlfedyINILSRRLGFTVA 219
Cdd:TIGR02169  167 EFDRKKEKAL-EELEEVEENIERLDLIIDEK--RQQLERLRREREKAERYQALLKEKREYE------GYELLKEKEALER 237
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    220 EKGHLDAELRRSQGVLEDYKYKYeDEISKRTAAENEFL-TLKKDADAafMIENE---LTAKVHSLIDEINFLRTLFDAEM 295
Cdd:TIGR02169  238 QKEAIERQLASLEEELEKLTEEI-SELEKRLEEIEQLLeELNKKIKD--LGEEEqlrVKEKIGELEAEIASLERSIAEKE 314
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    296 SQMQTPLSDTSVIISMDNNHSLDMESIIAEV------KTQYENIAKKSQAEAESWYQtKYEELQVTAGRHGDD------- 362
Cdd:TIGR02169  315 RELEDAEERLAKLEAEIDKLLAEIEELEREIeeerkrRDKLTEEYAELKEELEDLRA-ELEEVDKEFAETRDElkdyrek 393
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    363 LRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQR----------GEMALKDARGKLEGLKDAPQKAKQDRTR 432
Cdd:TIGR02169  394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKineleeekedKALEIKKQEWKLEQLAADLSKYEQELYD 473

                   ....*...
gi 51092301    433 LQKEYQEL 440
Cdd:TIGR02169  474 LKEEYDRV 481
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
362-441 2.12e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.07  E-value: 2.12e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 362 DLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQR---GEMALKDARGKLEGLKDAPQKAKQDRTRLQKEYQ 438
Cdd:COG4942  28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRiraLEQELAALEAELAELEKEIAELRAELEAQKEELA 107

                ...
gi 51092301 439 ELL 441
Cdd:COG4942 108 ELL 110
PRK01156 PRK01156
chromosome segregation protein; Provisional
141-462 8.01e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 45.66  E-value: 8.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  141 IDPT-IQRVRTEEREQIKTLNNRFASFIDKVQFLEQQNKVLDTKWALLQEQ------GTKTVKPEVETLFEDYINILSR- 212
Cdd:PRK01156 402 IDPDaIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcGTTLGEEKSNHIINHYNEKKSRl 481
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  213 --RLGFTVAEKGHLDAElRRSQGVLEDYKYKyeDEISKRTAAENEFLTLKKDADAAFMIENELTAKVHSLIDEINFLRTL 290
Cdd:PRK01156 482 eeKIREIEIEVKDIDEK-IVDLKKRKEYLES--EEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSL 558
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  291 FDAEMSQMQTPLSDTSVIISmdnnhSLDMESIIA---EVKTQYENIAKKSQaEAESWYQTKYEELQVTAGRHGDD---LR 364
Cdd:PRK01156 559 KLEDLDSKRTSWLNALAVIS-----LIDIETNRSrsnEIKKQLNDLESRLQ-EIEIGFPDDKSYIDKSIREIENEannLN 632
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  365 NTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALkDARGKLEGLKDAPQKAKQDRTRLQKEYQELLSVN 444
Cdd:PRK01156 633 NKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRIN-DIEDNLKKSRKALDDAKANRARLESTIEILRTRI 711
                        330
                 ....*....|....*...
gi 51092301  445 IYLDVEITTYRKLLEGEE 462
Cdd:PRK01156 712 NELSDRINDINETLESMK 729
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
199-442 8.60e-05

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 45.39  E-value: 8.60e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 199 VETLFEDYINILSRRLGFTVAEKGHLDAELRRSQGVLEDYKykyedeiskrtaAENEFLTLKKDADAAFMIENELTAKVH 278
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFR------------QKNGLVDLSEEAKLLLQQLSELESQLA 229
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 279 SLIDEINFLRtlfdAEMSQMQTPLSDTSVIISMDNNHSldmesIIAEVKTQYENIakksqaeaeswyQTKYEELQVTAGR 358
Cdd:COG3206 230 EARAELAEAE----ARLAALRAQLGSGPDALPELLQSP-----VIQQLRAQLAEL------------EAELAELSARYTP 288
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 359 HGDDLRNTKQEIAEINRMIQR--------LRSEIDHVKKQCANLQAAIADAEQRGEmALKDARGKLEGLkdapqkaKQDR 430
Cdd:COG3206 289 NHPDVIALRAQIAALRAQLQQeaqrilasLEAELEALQAREASLQAQLAQLEARLA-ELPELEAELRRL-------EREV 360
                       250
                ....*....|..
gi 51092301 431 TRLQKEYQELLS 442
Cdd:COG3206 361 EVARELYESLLQ 372
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
204-517 8.66e-05

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 44.82  E-value: 8.66e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 204 EDYINILSRRLGFTVAEKGHLDAELRRSQGVLEDYKYKYEDEISKRTAAENEFLTLKKDADAAFMIENELTAKVHSLI-- 281
Cdd:COG3883  15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAra 94
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 282 -----DEINFLRTLFDAEM-SQMQTPLSDTSVIISMDNNhsldmesIIAEVKTQYENIAKKsQAEAESwyqtKYEELQVT 355
Cdd:COG3883  95 lyrsgGSVSYLDVLLGSESfSDFLDRLSALSKIADADAD-------LLEELKADKAELEAK-KAELEA----KLAELEAL 162
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 356 AGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDARGKLEGLKDAPQKAKQDRTRLQK 435
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 436 EYQELLSVNIYLDVEITTYRklLEGEENRFNGEGIGPVNISVVPSTGSSGYDSAGGANRNHGLGGGSSHSYGRNHGLGGG 515
Cdd:COG3883 243 AASAAGAGAAGAAGAAAGSA--GAAGAAAGAAGAGAAAASAAGGGAGGAGGGGGGGGAASGGSGGGSGGAGGVGSGGGAG 320

                ..
gi 51092301 516 FS 517
Cdd:COG3883 321 AV 322
DUF1351 pfam07083
Protein of unknown function (DUF1351); This family consists of several bacterial and phage ...
324-441 2.43e-04

Protein of unknown function (DUF1351); This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.


Pssm-ID: 429283 [Multi-domain]  Cd Length: 210  Bit Score: 42.37  E-value: 2.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   324 AEVKTQYENIAKKSQAEAEswyqtKYEELQVTAgrhgDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCAnlqAAIADAEQ 403
Cdd:pfam07083   9 AAISFNFEELETYVDGIVA-----KYEGLVVTE----DTVKEAKKERAELNKIAKALDDKRKEVKKQYS---EPYDEFEA 76
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 51092301   404 RG---EMALKDARGKL-EGLKDAPQKAKQDRTRLQKE-YQELL 441
Cdd:pfam07083  77 KIkelVAKIKEAIDPIdEQIKAFEEKEKDAKRQLVKAlISELA 119
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
148-475 2.59e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.89  E-value: 2.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    148 VRTEEREQIKTLNNRFASFIDKVQFLEQQNKVLDTKWALLQEQGTKTVKPEVETlfEDYINILSRRLGFTVAEKGHLDAE 227
Cdd:TIGR02168  671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL--SRQISALRKDLARLEAEVEQLEER 748
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    228 LRRSQGVLEDYKYKYEDEISKRTAAENEFLTLKKDAdaafmieNELTAKVHSLIDEINFLRTLFDAEmsqmQTPLSDTSV 307
Cdd:TIGR02168  749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI-------EELEAQIEQLKEELKALREALDEL----RAELTLLNE 817
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    308 IISMDNNHSLDMESIIAEVKTQYENIAKKSQAEAEswyqtkyeelqvtagrhgdDLRNTKQEIAEINRMIQRLRSEIDHV 387
Cdd:TIGR02168  818 EAANLRERLESLERRIAATERRLEDLEEQIEELSE-------------------DIESLAAEIEELEELIEELESELEAL 878
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    388 KKQCANLQAAIADAE----------QRGEMALKDARGKLEGLKDA-------PQKAKQDRTRLQK----EYQELLSVNIY 446
Cdd:TIGR02168  879 LNERASLEEALALLRseleelseelRELESKRSELRRELEELREKlaqlelrLEGLEVRIDNLQErlseEYSLTLEEAEA 958
                          330       340       350
                   ....*....|....*....|....*....|.
gi 51092301    447 LDVEITTYRKLLEGEENRFNGE--GIGPVNI 475
Cdd:TIGR02168  959 LENKIEDDEEEARRRLKRLENKikELGPVNL 989
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
320-465 3.96e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.37  E-value: 3.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  320 ESIIAEVKTQYENIAKKSQA----EAESWY-------QTKYEELQ-----VTAGrhGDDLRNTKQEIAEINRMIQRLRSE 383
Cdd:COG4913  630 EERLEALEAELDALQERREAlqrlAEYSWDeidvasaEREIAELEaelerLDAS--SDDLAALEEQLEELEAELEELEEE 707
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  384 IDHVKKQCANLQAAIADAEQRgemaLKDARGKLEGLKDAPQKAkqDRTRLQKEYQELLSVNIYLDV------EITTYRKL 457
Cdd:COG4913  708 LDELKGEIGRLEKELEQAEEE----LDELQDRLEAAEDLARLE--LRALLEERFAAALGDAVERELrenleeRIDALRAR 781

                 ....*...
gi 51092301  458 LEGEENRF 465
Cdd:COG4913  782 LNRAEEEL 789
PRK09039 PRK09039
peptidoglycan -binding protein;
292-419 5.14e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 42.26  E-value: 5.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  292 DAEMSQMQTPLSDTSVIISMDNNHSLDMESIIAEVKtqyeniAKKSQAEAE-----SWYQTKYEELQVTAGRHGD---DL 363
Cdd:PRK09039  52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLR------ASLSAAEAErsrlqALLAELAGAGAAAEGRAGElaqEL 125
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 51092301  364 RNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGemalKDARGKLEGL 419
Cdd:PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD----RESQAKIADL 177
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
210-440 7.78e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 42.36  E-value: 7.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    210 LSRRLGFTVAEKGHLDAELRRSQGVLEDYKYKYEDEISKRTAAENEFLTLKKDADAAFMIENELTAKVHSLIDEINFLRT 289
Cdd:TIGR02169  679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    290 LFD---AEMSQMQTPLSDTSVIISmDNNHSLDMeSIIAEVKTQYENIaKKSQAEAESwyqtKYEELQVTAGRHGDDLRNT 366
Cdd:TIGR02169  759 ELKeleARIEELEEDLHKLEEALN-DLEARLSH-SRIPEIQAELSKL-EEEVSRIEA----RLREIEQKLNRLTLEKEYL 831
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 51092301    367 KQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQ---RGEMALKDARGKLEGLKDAPQKAKQDRTRLQKEYQEL 440
Cdd:TIGR02169  832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEeleELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
46 PHA02562
endonuclease subunit; Provisional
224-436 1.43e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.54  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  224 LDAELRRSQGVLEDYKyKYEDEISKRTAA-----ENEFLTLKKDADAAFMIENELTAKVHSLI-------DEINFLRTLF 291
Cdd:PHA02562 186 LDMKIDHIQQQIKTYN-KNIEEQRKKNGEniarkQNKYDELVEEAKTIKAEIEELTDELLNLVmdiedpsAALNKLNTAA 264
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  292 DAEMSQMQTplsdTSVIISMDNNHSL---------DMESIIAEVKTQYENIAKKSQAEaeswyQTKYEELQVTAGRHgDD 362
Cdd:PHA02562 265 AKIKSKIEQ----FQKVIKMYEKGGVcptctqqisEGPDRITKIKDKLKELQHSLEKL-----DTAIDELEEIMDEF-NE 334
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 51092301  363 LRNTKQE----IAEINRMIQRLRSEIDHVKKQCANLQAAIADAEqrgemalkdarGKLEGLKDAPQKAKQDRTRLQKE 436
Cdd:PHA02562 335 QSKKLLElknkISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA-----------EELAKLQDELDKIVKTKSELVKE 401
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
347-464 4.90e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 38.75  E-value: 4.90e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 347 TKYEELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRgemaLKDARGKLEGLKDApqka 426
Cdd:COG1579  17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEAR----IKKYEEQLGNVRNN---- 88
                        90       100       110
                ....*....|....*....|....*....|....*...
gi 51092301 427 kqdrtrlqKEYQELLSvniyldvEITTYRKLLEGEENR 464
Cdd:COG1579  89 --------KEYEALQK-------EIESLKRRISDLEDE 111
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
156-451 4.94e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 39.62  E-value: 4.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   156 IKTLNNRFASFIDKVQFLEQQNKVLDTKWALLQE--QGTKTVKPEVETLFEDYINilsrrlgftvaEKGHLDAELRRSQG 233
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQeiNEKTTEISNTQTQLNQLKD-----------EQNKIKKQLSEKQK 274
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   234 VLEDYKYK---YEDEISKrtaAENEFLTLKKDAdaafmiENELTAKVHSLIDEInflrtlfDAEMSQMQTPLSDTsviis 310
Cdd:TIGR04523 275 ELEQNNKKikeLEKQLNQ---LKSEISDLNNQK------EQDWNKELKSELKNQ-------EKKLEEIQNQISQN----- 333
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301   311 mdnnhsldmESIIAEVKTQYENIaKKSQAEAESWYQTKyeelqvtagrhgddlrntKQEIAEINRMIQRLRSEIDHVKKQ 390
Cdd:TIGR04523 334 ---------NKIISQLNEQISQL-KKELTNSESENSEK------------------QRELEEKQNEIEKLKKENQSYKQE 385
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 51092301   391 CANLQAAIADAEQRGEMALKDARGKLEGLKdapqKAKQDRTRLQKEYQELLSVNIYLDVEI 451
Cdd:TIGR04523 386 IKNLESQINDLESKIQNQEKLNQQKDEQIK----KLQQEKELLEKEIERLKETIIKNNSEI 442
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
330-440 5.06e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 39.75  E-value: 5.06e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301 330 YENIAKKSQAEAE-SWYQTKYEELqvtagrhgddlrntKQEIAEinrmIQRLRSEIDHVKKQCANLQAAIADAEQRG--- 405
Cdd:COG4717 128 LPLYQELEALEAElAELPERLEEL--------------EERLEE----LRELEEELEELEAELAELQEELEELLEQLsla 189
                        90       100       110
                ....*....|....*....|....*....|....*.
gi 51092301 406 -EMALKDARGKLEGLKDAPQKAKQDRTRLQKEYQEL 440
Cdd:COG4717 190 tEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
46 PHA02562
endonuclease subunit; Provisional
302-440 5.12e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 39.61  E-value: 5.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  302 LSDTSVIISMD------------NNHSLDME--SIIAEVKTQYENI--AKKSQAEAESWYQTKYEELQVTAGRHGDDLRN 365
Cdd:PHA02562 159 LLDISVLSEMDklnkdkirelnqQIQTLDMKidHIQQQIKTYNKNIeeQRKKNGENIARKQNKYDELVEEAKTIKAEIEE 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  366 TKQEIAEINRMIQ--------------RLRSEIDHVKKQ---------CANLQAAIADAEQR---GEMALKDARGKLEGL 419
Cdd:PHA02562 239 LTDELLNLVMDIEdpsaalnklntaaaKIKSKIEQFQKVikmyekggvCPTCTQQISEGPDRitkIKDKLKELQHSLEKL 318
                        170       180
                 ....*....|....*....|....
gi 51092301  420 KDAPQKAKQ---DRTRLQKEYQEL 440
Cdd:PHA02562 319 DTAIDELEEimdEFNEQSKKLLEL 342
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
346-440 5.96e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.51  E-value: 5.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  346 QTKYEELQVTAGRHGDDlrntkqEIAEINRMIQRLRSEIDHVKKQCANLQAAIAD------------AEQRGEMA--LKD 411
Cdd:COG4913  322 REELDELEAQIRGNGGD------RLEQLEREIERLERELEERERRRARLEALLAAlglplpasaeefAALRAEAAalLEA 395
                         90       100
                 ....*....|....*....|....*....
gi 51092301  412 ARGKLEGLKDAPQKAKQDRTRLQKEYQEL 440
Cdd:COG4913  396 LEEELEALEEALAEAEAALRDLRRELREL 424
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
206-413 7.29e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 39.14  E-value: 7.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  206 YINILSRRLGF--TVAEKGHLDAELRRSqgvledYKYKYEDEISKRtaAENEFLTLKKDADAafMIE--NELTAKVHSLI 281
Cdd:PRK05771  51 LLTKLSEALDKlrSYLPKLNPLREEKKK------VSVKSLEELIKD--VEEELEKIEKEIKE--LEEeiSELENEIKELE 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301  282 DEINFLRTL--FDAEMSQMQTpLSDTSVII-SMDNNHSLDMESIIAEVKTQYENIAK---------KSQAEAESWYQTK- 348
Cdd:PRK05771 121 QEIERLEPWgnFDLDLSLLLG-FKYVSVFVgTVPEDKLEELKLESDVENVEYISTDKgyvyvvvvvLKELSDEVEEELKk 199
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 51092301  349 --YEELQVTAGRHGDD-LRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADA----EQRGEMALKDAR 413
Cdd:PRK05771 200 lgFERLELEEEGTPSElIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYleieLERAEALSKFLK 271
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
320-466 9.45e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 38.88  E-value: 9.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    320 ESIIAEVKTQYENI--------------AKKSQAEAESW------YQTKYEELQVTAGR-------HGDDLRNTKQEIAE 372
Cdd:TIGR02168  192 EDILNELERQLKSLerqaekaerykelkAELRELELALLvlrleeLREELEELQEELKEaeeeleeLTAELQELEEKLEE 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51092301    373 INRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMA---LKDARGKLEGLKDAPQKAKQDRTRLQKEYQEllsvniyLDV 449
Cdd:TIGR02168  272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILrerLANLERQLEELEAQLEELESKLDELAEELAE-------LEE 344
                          170
                   ....*....|....*..
gi 51092301    450 EITTYRKLLEGEENRFN 466
Cdd:TIGR02168  345 KLEELKEELESLEAELE 361
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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