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Conserved domains on  [gi|50540272|ref|NP_001002603|]
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dynein regulatory complex subunit 2 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NYD-SP28 pfam14772
Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in ...
 27-128 1.34e-20

Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic cell cytoplams and human spermatozoa tail. It is post-translationally modified during sperm capacitation and ultimately contributes to the success of fertilization.


:

Pssm-ID: 464307 [Multi-domain]  Cd Length: 102  Bit Score: 86.50  E-value: 1.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50540272    27 QKAQAEEEIAKRKEDMLTHFLKDKLQKEEKNTVLNLHKLRQQWRAVLTQTKIAELRNDMSVLSQTFERVLDYKDNIIRSL 106
Cdd:pfam14772   1 VAADAEEEQRRRKEEELRRFRKEKLEEEAKSSQEKFEKINQRWRSILRKNKPQELREELEEQKQACERIIDRKDKLIKEL 80

                          90       100
                  ....*....|....*....|..
gi 50540272   107 QVDLSERELQSELMRSSHLHNV 128
Cdd:pfam14772  81 QQELKEADEQYVKALRKQAEDI 102
flgK super family cl35700
flagellar hook-associated protein FlgK; Validated
 230-302 4.19e-04

flagellar hook-associated protein FlgK; Validated


The actual alignment was detected with superfamily member PRK08471:

Pssm-ID: 236270 [Multi-domain]  Cd Length: 613  Bit Score: 42.73  E-value: 4.19e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 50540272  230 QQQVLNHYNESTRDKIITTDDLMNKDVQSA-KEIDSLKKHIQKLQDSISTfrgqLSSGQTDKTAEQLRSERDEL 302
Cdd:PRK08471 140 KTETLTNNIKDTRERLDTLQKKVNEELKVTvDEINSLGKQIAEINKQIKE----VEAGKTLKHANELRDKRDEL 209
NYD-SP28_assoc super family cl20698
Sperm tail C-terminal domain; NYD-SP28 is expressed in a development-dependent manner, ...
 403-442 9.81e-03

Sperm tail C-terminal domain; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic cell cytoplams and human spermatozoa tail. It is post-translationally modified during sperm capacitation and ultimately contributes to the success of fertilization. This short region is found at the very C-terminus of family members of family NYD-SP28, pfam14772.


The actual alignment was detected with superfamily member pfam14775:

Pssm-ID: 464309  Cd Length: 60  Bit Score: 34.49  E-value: 9.81e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 50540272   403 LAKFWQRYNKVELDCLCVKREKLLLLQENERLRLFLKQYL 442
Cdd:pfam14775  21 LEKALEKYHEVLTERSKLIEETESLRQQNTELRNLLKQYL 60
 
Name Accession Description Interval E-value
NYD-SP28 pfam14772
Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in ...
 27-128 1.34e-20

Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic cell cytoplams and human spermatozoa tail. It is post-translationally modified during sperm capacitation and ultimately contributes to the success of fertilization.


Pssm-ID: 464307 [Multi-domain]  Cd Length: 102  Bit Score: 86.50  E-value: 1.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50540272    27 QKAQAEEEIAKRKEDMLTHFLKDKLQKEEKNTVLNLHKLRQQWRAVLTQTKIAELRNDMSVLSQTFERVLDYKDNIIRSL 106
Cdd:pfam14772   1 VAADAEEEQRRRKEEELRRFRKEKLEEEAKSSQEKFEKINQRWRSILRKNKPQELREELEEQKQACERIIDRKDKLIKEL 80

                          90       100
                  ....*....|....*....|..
gi 50540272   107 QVDLSERELQSELMRSSHLHNV 128
Cdd:pfam14772  81 QQELKEADEQYVKALRKQAEDI 102
flgK PRK08471
flagellar hook-associated protein FlgK; Validated
 230-302 4.19e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236270 [Multi-domain]  Cd Length: 613  Bit Score: 42.73  E-value: 4.19e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 50540272  230 QQQVLNHYNESTRDKIITTDDLMNKDVQSA-KEIDSLKKHIQKLQDSISTfrgqLSSGQTDKTAEQLRSERDEL 302
Cdd:PRK08471 140 KTETLTNNIKDTRERLDTLQKKVNEELKVTvDEINSLGKQIAEINKQIKE----VEAGKTLKHANELRDKRDEL 209
NYD-SP28_assoc pfam14775
Sperm tail C-terminal domain; NYD-SP28 is expressed in a development-dependent manner, ...
 403-442 9.81e-03

Sperm tail C-terminal domain; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic cell cytoplams and human spermatozoa tail. It is post-translationally modified during sperm capacitation and ultimately contributes to the success of fertilization. This short region is found at the very C-terminus of family members of family NYD-SP28, pfam14772.


Pssm-ID: 464309  Cd Length: 60  Bit Score: 34.49  E-value: 9.81e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 50540272   403 LAKFWQRYNKVELDCLCVKREKLLLLQENERLRLFLKQYL 442
Cdd:pfam14775  21 LEKALEKYHEVLTERSKLIEETESLRQQNTELRNLLKQYL 60
 
Name Accession Description Interval E-value
NYD-SP28 pfam14772
Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in ...
 27-128 1.34e-20

Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic cell cytoplams and human spermatozoa tail. It is post-translationally modified during sperm capacitation and ultimately contributes to the success of fertilization.


Pssm-ID: 464307 [Multi-domain]  Cd Length: 102  Bit Score: 86.50  E-value: 1.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50540272    27 QKAQAEEEIAKRKEDMLTHFLKDKLQKEEKNTVLNLHKLRQQWRAVLTQTKIAELRNDMSVLSQTFERVLDYKDNIIRSL 106
Cdd:pfam14772   1 VAADAEEEQRRRKEEELRRFRKEKLEEEAKSSQEKFEKINQRWRSILRKNKPQELREELEEQKQACERIIDRKDKLIKEL 80

                          90       100
                  ....*....|....*....|..
gi 50540272   107 QVDLSERELQSELMRSSHLHNV 128
Cdd:pfam14772  81 QQELKEADEQYVKALRKQAEDI 102
flgK PRK08471
flagellar hook-associated protein FlgK; Validated
 230-302 4.19e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236270 [Multi-domain]  Cd Length: 613  Bit Score: 42.73  E-value: 4.19e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 50540272  230 QQQVLNHYNESTRDKIITTDDLMNKDVQSA-KEIDSLKKHIQKLQDSISTfrgqLSSGQTDKTAEQLRSERDEL 302
Cdd:PRK08471 140 KTETLTNNIKDTRERLDTLQKKVNEELKVTvDEINSLGKQIAEINKQIKE----VEAGKTLKHANELRDKRDEL 209
NYD-SP28_assoc pfam14775
Sperm tail C-terminal domain; NYD-SP28 is expressed in a development-dependent manner, ...
 403-442 9.81e-03

Sperm tail C-terminal domain; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic cell cytoplams and human spermatozoa tail. It is post-translationally modified during sperm capacitation and ultimately contributes to the success of fertilization. This short region is found at the very C-terminus of family members of family NYD-SP28, pfam14772.


Pssm-ID: 464309  Cd Length: 60  Bit Score: 34.49  E-value: 9.81e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 50540272   403 LAKFWQRYNKVELDCLCVKREKLLLLQENERLRLFLKQYL 442
Cdd:pfam14775  21 LEKALEKYHEVLTERSKLIEETESLRQQNTELRNLLKQYL 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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