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Conserved domains on  [gi|47564080|ref|NP_001001178|]
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coiled-coil domain-containing protein 148 isoform 2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF5401 super family cl38662
Family of unknown function (DUF5401); This is a family of unknown function found in ...
288-410 8.81e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


The actual alignment was detected with superfamily member pfam17380:

Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.03  E-value: 8.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47564080   288 LLAKDRRR--QQELCADLKAKVSQWRAQQEELSRLEMEISARRREREEEKEKLWKKKELLRREETEIKirkywamKQQKW 365
Cdd:pfam17380 406 ILEEERQRkiQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERK-------RKKLE 478
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 47564080   366 QEMEKRDLRRLEELKKLMAEQSVKDRERV----KYRQELLEKRLMERKK 410
Cdd:pfam17380 479 LEKEKRDRKRAEEQRRKILEKELEERKQAmieeERKRKLLEKEMEERQK 527
 
Name Accession Description Interval E-value
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
288-410 8.81e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.03  E-value: 8.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47564080   288 LLAKDRRR--QQELCADLKAKVSQWRAQQEELSRLEMEISARRREREEEKEKLWKKKELLRREETEIKirkywamKQQKW 365
Cdd:pfam17380 406 ILEEERQRkiQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERK-------RKKLE 478
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 47564080   366 QEMEKRDLRRLEELKKLMAEQSVKDRERV----KYRQELLEKRLMERKK 410
Cdd:pfam17380 479 LEKEKRDRKRAEEQRRKILEKELEERKQAmieeERKRKLLEKEMEERQK 527
 
Name Accession Description Interval E-value
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
288-410 8.81e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.03  E-value: 8.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47564080   288 LLAKDRRR--QQELCADLKAKVSQWRAQQEELSRLEMEISARRREREEEKEKLWKKKELLRREETEIKirkywamKQQKW 365
Cdd:pfam17380 406 ILEEERQRkiQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERK-------RKKLE 478
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 47564080   366 QEMEKRDLRRLEELKKLMAEQSVKDRERV----KYRQELLEKRLMERKK 410
Cdd:pfam17380 479 LEKEKRDRKRAEEQRRKILEKELEERKQAmieeERKRKLLEKEMEERQK 527
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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