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Conserved domains on  [gi|108773365|ref|YP_635827|]
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photosystem II protein N (chloroplast) [Oltmannsiellopsis viridis]

Protein Classification

photosystem II protein N( domain architecture ID 10000016)

photosystem II protein N (or protein PsbN) may play a role in photosystem I and II biogenesis

Gene Symbol:  psbN
Gene Ontology:  GO:0016020
PubMed:  24619613|15100025

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psbN CHL00020
photosystem II protein N
 2-44 9.69e-24

photosystem II protein N


:

Pssm-ID: 176963  Cd Length: 43  Bit Score: 82.43  E-value: 9.69e-24
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 108773365  2 ESPAFFFTIFLWCLLLSVTGYSVYVGFGPPSKDLRDPFDEHED 44
Cdd:CHL00020  1 METATLVAIFISGLLVSFTGYALYTAFGQPSKQLRDPFEEHED 43
 
Name Accession Description Interval E-value
psbN CHL00020
photosystem II protein N
 2-44 9.69e-24

photosystem II protein N


Pssm-ID: 176963  Cd Length: 43  Bit Score: 82.43  E-value: 9.69e-24
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 108773365  2 ESPAFFFTIFLWCLLLSVTGYSVYVGFGPPSKDLRDPFDEHED 44
Cdd:CHL00020  1 METATLVAIFISGLLVSFTGYALYTAFGQPSKQLRDPFEEHED 43
PsbN pfam02468
Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on ...
 1-44 3.08e-20

Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on the chloroplast genome. psbN is involved in photosystem II during photosynthesis, but its exact role is unknown.


Pssm-ID: 426789  Cd Length: 43  Bit Score: 73.86  E-value: 3.08e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 108773365   1 MEsPAFFFTIFLWCLLLSVTGYSVYVGFGPPSKDLRDPFDEHED 44
Cdd:pfam02468  1 ME-PATVLSISIAAVLVAITGYSIYTAFGPPSKELRDPFEDHED 43
PsbN COG5728
Photosystem II reaction center protein N, PsbN [Energy production and conversion]; Photosystem ...
 3-44 3.82e-14

Photosystem II reaction center protein N, PsbN [Energy production and conversion]; Photosystem II reaction center protein N, PsbN is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444438  Cd Length: 43  Bit Score: 58.44  E-value: 3.82e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 108773365  3 SPAFFFTIFLWCLLLSVTGYSVYVGFGPPSKDLRDPFDEHED 44
Cdd:COG5728   2 EPATVLSISIAAVLVAITGFSIYTAFGPPSKELADPFEDHED 43
 
Name Accession Description Interval E-value
psbN CHL00020
photosystem II protein N
 2-44 9.69e-24

photosystem II protein N


Pssm-ID: 176963  Cd Length: 43  Bit Score: 82.43  E-value: 9.69e-24
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 108773365  2 ESPAFFFTIFLWCLLLSVTGYSVYVGFGPPSKDLRDPFDEHED 44
Cdd:CHL00020  1 METATLVAIFISGLLVSFTGYALYTAFGQPSKQLRDPFEEHED 43
PsbN pfam02468
Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on ...
 1-44 3.08e-20

Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on the chloroplast genome. psbN is involved in photosystem II during photosynthesis, but its exact role is unknown.


Pssm-ID: 426789  Cd Length: 43  Bit Score: 73.86  E-value: 3.08e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 108773365   1 MEsPAFFFTIFLWCLLLSVTGYSVYVGFGPPSKDLRDPFDEHED 44
Cdd:pfam02468  1 ME-PATVLSISIAAVLVAITGYSIYTAFGPPSKELRDPFEDHED 43
PsbN COG5728
Photosystem II reaction center protein N, PsbN [Energy production and conversion]; Photosystem ...
 3-44 3.82e-14

Photosystem II reaction center protein N, PsbN [Energy production and conversion]; Photosystem II reaction center protein N, PsbN is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444438  Cd Length: 43  Bit Score: 58.44  E-value: 3.82e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 108773365  3 SPAFFFTIFLWCLLLSVTGYSVYVGFGPPSKDLRDPFDEHED 44
Cdd:COG5728   2 EPATVLSISIAAVLVAITGFSIYTAFGPPSKELADPFEDHED 43
psbN PRK13183
photosystem II reaction center protein PsbN;
3-44 4.29e-13

photosystem II reaction center protein PsbN;


Pssm-ID: 171884  Cd Length: 46  Bit Score: 55.82  E-value: 4.29e-13
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 108773365  3 SPAFFFTIFLWCLLLSVTGYSVYVGFGPPSKDLRDPFDEHED 44
Cdd:PRK13183  5 SPALSLAITILAILLALTGFGIYTAFGPPSKELDDPFDDHED 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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