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Conserved domains on  [gi|62161124|ref|YP_214765|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Mytilus galloprovincialis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009588)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 3.48e-42

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 134.60  E-value: 3.48e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    1 MVMGLSVVFVCIVCCLFTGLFMMLSEKRGLDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMF 80
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 62161124   81 FYGKSVLGILSSSGFLLILFVGLYHEYREGSLEWV 115
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 3.48e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 134.60  E-value: 3.48e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    1 MVMGLSVVFVCIVCCLFTGLFMMLSEKRGLDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMF 80
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 62161124   81 FYGKSVLGILSSSGFLLILFVGLYHEYREGSLEWV 115
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-113 6.55e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 95.18  E-value: 6.55e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    31 DREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAyMFFYGKSVLGILSSSGFLLILFVGLYHEYREG 110
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWA-VSFRELGWFGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 62161124   111 SLE 113
Cdd:pfam00507  92 ALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-114 4.95e-25

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 90.95  E-value: 4.95e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   7 VVFVCIVCCLFTGLFMMLSEKRGlDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMfFYGKSV 86
Cdd:COG0838  12 LLVALGLALAMLLLSRLLGPKRP-NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVV-FRELGW 89

                        90       100
                ....*....|....*....|....*...
gi 62161124  87 LGILSSSGFLLILFVGLYHEYREGSLEW 114
Cdd:COG0838  90 FGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 3.48e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 134.60  E-value: 3.48e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    1 MVMGLSVVFVCIVCCLFTGLFMMLSEKRGLDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMF 80
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 62161124   81 FYGKSVLGILSSSGFLLILFVGLYHEYREGSLEWV 115
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-114 7.57e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 110.64  E-value: 7.57e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    2 VMGLSVVFVCIVCCLFTGLFMMLSEKRGLDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMFF 81
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 62161124   82 YGKSVLGILSSSGFLLILFVGLYHEYREGSLEW 114
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 9-115 5.84e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 108.54  E-value: 5.84e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    9 FVCIVCCLFTGLFM----MLSEKRGLDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMFFYGK 84
Cdd:MTH00202   6 FMSILSILISSLLFlvswMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSW 85

                         90       100       110
                 ....*....|....*....|....*....|.
gi 62161124   85 SVLGILSSSGFLLILFVGLYHEYREGSLEWV 115
Cdd:MTH00202  86 SKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 2-114 3.01e-29

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 101.86  E-value: 3.01e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    2 VMGLSVVFVCIVCCLFTGLFMMLSEKRGLDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMFF 81
Cdd:MTH00012   3 LMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILM 82

                         90       100       110
                 ....*....|....*....|....*....|...
gi 62161124   82 YGKSVLGILSSSGFLLILFVGLYHEYREGSLEW 114
Cdd:MTH00012  83 TSTSKTVVYTSILFLLILVIGLIHEWREGSLDW 115
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 31-114 4.66e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 96.22  E-value: 4.66e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   31 DREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMFFYGKSVLGILSSSGFLLILFVGLYHEYREG 110
Cdd:MTH00069  29 DSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLTLGLIYEWIQG 108


                 ....
gi 62161124  111 SLEW 114
Cdd:MTH00069 109 GLEW 112
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 31-114 6.00e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 95.72  E-value: 6.00e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   31 DREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMFFYGKSVLGILSSSGFLLILFVGLYHEYREG 110
Cdd:MTH00113  30 DNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILTLLTLGLIYEWLQG 109


                 ....
gi 62161124  111 SLEW 114
Cdd:MTH00113 110 GLEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-113 6.55e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 95.18  E-value: 6.55e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    31 DREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAyMFFYGKSVLGILSSSGFLLILFVGLYHEYREG 110
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWA-VSFRELGWFGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 62161124   111 SLE 113
Cdd:pfam00507  92 ALE 94
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 6-115 3.38e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 93.89  E-value: 3.38e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    6 SVVFVCIVCCLFTGLFMMLSE---KRGLDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMFFY 82
Cdd:MTH00042   3 NLIFFLLIILILTSLLLLAGHflpSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLI 82

                         90       100       110
                 ....*....|....*....|....*....|...
gi 62161124   83 GKSVLGILSSSGFLLILFVGLYHEYREGSLEWV 115
Cdd:MTH00042  83 TNPSTLLPISLIFLIILTIGLVYEWVNGGLEWA 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 31-114 7.66e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 93.06  E-value: 7.66e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   31 DREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMFFYGKSVLGILSSSGFLLILFVGLYHEYREG 110
Cdd:MTH00136  31 DHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLIYEWLQG 110


                 ....
gi 62161124  111 SLEW 114
Cdd:MTH00136 111 GLEW 114
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-114 4.68e-25

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 91.08  E-value: 4.68e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    7 VVFVCIVCCLftGLFMMLSEK----RGLDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAyMFFY 82
Cdd:PRK06602  12 LIFLIVAIGL--GILLLVAGKllgpRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWA-VSFR 88

                         90       100       110
                 ....*....|....*....|....*....|..
gi 62161124   83 GKSVLGILSSSGFLLILFVGLYHEYREGSLEW 114
Cdd:PRK06602  89 EIGWLGFVEAMIFILVLLVGLVYLWRKGALDW 120
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-114 4.95e-25

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 90.95  E-value: 4.95e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   7 VVFVCIVCCLFTGLFMMLSEKRGlDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMfFYGKSV 86
Cdd:COG0838  12 LLVALGLALAMLLLSRLLGPKRP-NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVV-FRELGW 89

                        90       100
                ....*....|....*....|....*...
gi 62161124  87 LGILSSSGFLLILFVGLYHEYREGSLEW 114
Cdd:COG0838  90 FGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 33-115 3.10e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 86.53  E-value: 3.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   33 EKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMFFYGKSVLGILSSSGFLLILFVGLYHEYREGSL 112
Cdd:MTH00106  32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                 ...
gi 62161124  113 EWV 115
Cdd:MTH00106 112 EWT 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 9.00e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 77.63  E-value: 9.00e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    1 MVMGLSVVFVCIVCCLFTGLFMMLSeKRGLDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMF 80
Cdd:MTH00203   2 NLIMLFFLIALLLSLILLFIAFWLP-KVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 62161124   81 FYGKSvlGILSSSGFLLILFVGLYHEYREGSLEW 114
Cdd:MTH00203  81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 8-114 3.52e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 73.56  E-value: 3.52e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    8 VFVCIVCCLFTGLFMMLSEKRGlDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAyMFFYGKSVL 87
Cdd:MTH00018   8 IFSVVLSALFSGASYFLGVKQP-DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWC-VLYNQIAPF 85

                         90       100
                 ....*....|....*....|....*..
gi 62161124   88 GILSSSGFLLILFVGLYHEYREGSLEW 114
Cdd:MTH00018  86 GFWTMVGFLFILTLGLIYEWIKGGLEW 112
ndhC CHL00022
NADH dehydrogenase subunit 3
 33-114 8.75e-18

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 72.71  E-value: 8.75e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   33 EKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAyMFFYGKSVLGILSSSGFLLILFVGLYHEYREGSL 112
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWA-MSFDVLGVSAFIEALIFVLILIVGLVYAWRKGAL 117


                 ..
gi 62161124  113 EW 114
Cdd:CHL00022 118 EW 119
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-114 5.60e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 70.51  E-value: 5.60e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   31 DREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAyMFFYGKSVLGILSSSGFLLILFVGLYHEYREG 110
Cdd:MTH00055  35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWC-VVYNQIGLFGFWVMYLFLIILTIGLIYEWVKG 113


                 ....
gi 62161124  111 SLEW 114
Cdd:MTH00055 114 GLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 10-114 2.80e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 68.81  E-value: 2.80e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   10 VCIVCCLFTGLFMMLSEKRGL---DREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAyMFFYGKSV 86
Cdd:MTH00030  16 VGIILLLVSISFTLGNSRIGLtkpDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWS-IVFNQLNL 94

                         90       100
                 ....*....|....*....|....*...
gi 62161124   87 LGILSSSGFLLILFVGLYHEYREGSLEW 114
Cdd:MTH00030  95 FSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
31-114 2.88e-10

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 53.21  E-value: 2.88e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   31 DREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAyMFFYGKSVLGILSSSGFLLILFVGLYHEYREG 110
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWA-VAYDKLGLFALIEMLIFVVMLLVGLAYAWKKK 117


                 ....
gi 62161124  111 SLEW 114
Cdd:PRK07756 118 VLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
4-114 4.64e-10

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 53.13  E-value: 4.64e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    4 GLSVVFVcIVCCLFTGLFMMLS------EKRGLDREKCSPYECGFEPIGSARSpFSIRFFLVAVLFVVFDVEVVLLMPFA 77
Cdd:PRK08489  12 GVFVLLV-LTFVAFFLTTRLARfisrklAQKNTEKLKLAIYECGPEPVKQPNR-ISSHFYIMALLFILFDVEIVFMFPWA 89

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 62161124   78 yMFFYGKSVLGILSSSGFLLILFVGLYHEYREGSLEW 114
Cdd:PRK08489  90 -VDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 29-115 6.62e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 45.19  E-value: 6.62e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124   29 GLDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMfFYGKSVLGILSSSGFLLILFVGLYHEYR 108
Cdd:PRK06432  58 GSDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFD-FKRLGLIPFIETLIFLAMPLFAVYYAFK 136


                 ....*..
gi 62161124  109 EGSLEWV 115
Cdd:PRK06432 137 MGYMRWL 143
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 2.50e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.96  E-value: 2.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    1 MVMGLSVVFVCIVCCLFTGLFMMLSEKRGlDREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLmpfayMF 80
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKF-DLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMF-----LG 75

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 62161124   81 FYGKSVLGILSSSGFLLILFVGLYHEYREGSLEWV 115
Cdd:MTH00092  76 LLVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIWV 110
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 1-115 1.57e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 40.65  E-value: 1.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62161124    1 MVMGLSVVFVCIVCCLFTGLFM--MLSEKRGL-DREKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPfa 77
Cdd:MTH00060   1 MLVLLFVFFVFFLLFLVIYFFHsgLWNNKIYSgGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLN-- 78

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 62161124   78 yMFFYGKSVLGILSSSGFLLILFVGLYHEYREGSLEWV 115
Cdd:MTH00060  79 -MPFQGLLFYNFWYYYFFLLLLFLGFVVELFSGYVRWV 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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