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Conserved domains on  [gi|2312622904|ref|YP_010499297|]
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ribosomal protein L36 (chloroplast) [Carex littledalei]

Protein Classification

ribosomal protein bL36( domain architecture ID 10011449)

ribosomal protein bL36 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 1.19e-05

50S ribosomal protein L36; Reviewed


:

Pssm-ID: 179039  Cd Length: 37  Bit Score: 36.47  E-value: 1.19e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2312622904  1 MKIGASVRKICKRCRLVRRRKQLTVICPNLKHKKRQG 37
Cdd:PRK00465   1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
 
Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 1.19e-05

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 36.47  E-value: 1.19e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2312622904  1 MKIGASVRKICKRCRLVRRRKQLTVICPNLKHKKRQG 37
Cdd:PRK00465   1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-37 4.57e-04

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 32.40  E-value: 4.57e-04
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2312622904  1 MKIGASVRKICKRCRLVRRRKQLTVIC-PNLKHKKRQG 37
Cdd:COG0257    1 MKVRASVKKICRDCKVVRRKGRVYVICkKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-37 5.45e-04

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 32.10  E-value: 5.45e-04
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2312622904  1 MKIGASVRKICKRCRLVRRRKQLTVICP-NLKHKKRQG 37
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKkNPRHKQRQG 38
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-37 9.52e-04

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 31.69  E-value: 9.52e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2312622904  1 MKIGASVRKICKRCRLVRRRKQLTVICPNLKHKKRQG 37
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICKNPKHKQRQG 37
 
Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 1.19e-05

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 36.47  E-value: 1.19e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2312622904  1 MKIGASVRKICKRCRLVRRRKQLTVICPNLKHKKRQG 37
Cdd:PRK00465   1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-37 4.57e-04

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 32.40  E-value: 4.57e-04
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2312622904  1 MKIGASVRKICKRCRLVRRRKQLTVIC-PNLKHKKRQG 37
Cdd:COG0257    1 MKVRASVKKICRDCKVVRRKGRVYVICkKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-37 5.45e-04

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 32.10  E-value: 5.45e-04
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2312622904  1 MKIGASVRKICKRCRLVRRRKQLTVICP-NLKHKKRQG 37
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKkNPRHKQRQG 38
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-37 9.52e-04

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 31.69  E-value: 9.52e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2312622904  1 MKIGASVRKICKRCRLVRRRKQLTVICPNLKHKKRQG 37
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICKNPKHKQRQG 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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