Conserved domains on
[gi|1869252993|ref|YP_009897527|]
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Ycf2 (chloroplast) [Iberis amara]
Protein Classification
Ycf2( domain architecture ID 11414145)
Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||||||||||||||||||||||||||||
| ycf2 | CHL00206 | Ycf2; Provisional |
1-2278 | 0e+00 | ||||||||||||||||||||||||||||||
Ycf2; Provisional : Pssm-ID: 214396 [Multi-domain] Cd Length: 2281 Bit Score: 4138.80 E-value: 0e+00
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| Name | Accession | Description | Interval | E-value | ||||||||||||||||||||||||||||||
| ycf2 | CHL00206 | Ycf2; Provisional |
1-2278 | 0e+00 | ||||||||||||||||||||||||||||||
Ycf2; Provisional Pssm-ID: 214396 [Multi-domain] Cd Length: 2281 Bit Score: 4138.80 E-value: 0e+00
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| DUF825 | pfam05695 | Plant protein of unknown function (DUF825); This family consists of several plant proteins ... |
1-1478 | 0e+00 | ||||||||||||||||||||||||||||||
Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown. Pssm-ID: 283375 Cd Length: 1486 Bit Score: 2767.25 E-value: 0e+00
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| RecA-like_Ycf2 | cd19505 | ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ... |
1614-1798 | 6.37e-78 | ||||||||||||||||||||||||||||||
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410913 [Multi-domain] Cd Length: 161 Bit Score: 254.99 E-value: 6.37e-78
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| RPT1 | COG1222 | ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
1622-1873 | 5.82e-08 | ||||||||||||||||||||||||||||||
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 56.94 E-value: 5.82e-08
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| Name | Accession | Description | Interval | E-value | ||||||||||||||||||||||||||||||
| ycf2 | CHL00206 | Ycf2; Provisional |
1-2278 | 0e+00 | ||||||||||||||||||||||||||||||
Ycf2; Provisional Pssm-ID: 214396 [Multi-domain] Cd Length: 2281 Bit Score: 4138.80 E-value: 0e+00
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| DUF825 | pfam05695 | Plant protein of unknown function (DUF825); This family consists of several plant proteins ... |
1-1478 | 0e+00 | ||||||||||||||||||||||||||||||
Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown. Pssm-ID: 283375 Cd Length: 1486 Bit Score: 2767.25 E-value: 0e+00
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| RecA-like_Ycf2 | cd19505 | ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ... |
1614-1798 | 6.37e-78 | ||||||||||||||||||||||||||||||
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410913 [Multi-domain] Cd Length: 161 Bit Score: 254.99 E-value: 6.37e-78
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| RecA-like_protease | cd19481 | proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
1624-1798 | 2.92e-09 | ||||||||||||||||||||||||||||||
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 58.06 E-value: 2.92e-09
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| RPT1 | COG1222 | ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
1622-1873 | 5.82e-08 | ||||||||||||||||||||||||||||||
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 56.94 E-value: 5.82e-08
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| AAA | pfam00004 | ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
1628-1787 | 9.90e-08 | ||||||||||||||||||||||||||||||
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 52.98 E-value: 9.90e-08
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| RecA-like_CDC48_r2-like | cd19511 | second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
1612-1796 | 2.54e-04 | ||||||||||||||||||||||||||||||
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 43.81 E-value: 2.54e-04
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| RecA-like_NVL_r1-like | cd19518 | first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
1609-1786 | 4.71e-03 | ||||||||||||||||||||||||||||||
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 40.08 E-value: 4.71e-03
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