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NADH-plastoquinone oxidoreductase subunit 7 (chloroplast) [Actinidia zhejiangensis]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 906.38
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 1 MT A PATRK N LMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V PATRK D LMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 81 IT I NAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 IT V NAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 161 GG I AADLP H GWIDKCLDFCDYFL RR VAEYQKLIT Q NPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GG V AADLP Y GWIDKCLDFCDYFL TG VAEYQKLIT R NPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 241 CYDEFDWEVQWQKEGDSLARYLVRI S EMTESIKIIQQALE R IPGGPYENLE I RRFDR VRNP EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWEVQWQKEGDSLARYLVRI G EMTESIKIIQQALE G IPGGPYENLE A RRFDR EKDS EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1824663940 321 LSKQELYVRVEAPKGELGIFLIGD QN VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD DS VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 906.38
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 1 MT A PATRK N LMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V PATRK D LMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 81 IT I NAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 IT V NAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 161 GG I AADLP H GWIDKCLDFCDYFL RR VAEYQKLIT Q NPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GG V AADLP Y GWIDKCLDFCDYFL TG VAEYQKLIT R NPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 241 CYDEFDWEVQWQKEGDSLARYLVRI S EMTESIKIIQQALE R IPGGPYENLE I RRFDR VRNP EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWEVQWQKEGDSLARYLVRI G EMTESIKIIQQALE G IPGGPYENLE A RRFDR EKDS EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1824663940 321 LSKQELYVRVEAPKGELGIFLIGD QN VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD DS VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 588.58
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 7 RKNL M IV NMGP H HPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AITIN A P 86
Cdd:COG0649 3 ETEE M VL NMGP Q HPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAYVL A V 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGG IAA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGG VRR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 167 LP H G WID K CLD F C DYF LR R VA EY QK L I T Q N P IF LE R VE GVG IIGG E E AI NW G LS GP M LRASG IQW DLRK VDH Y EC YDE F D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PK R LD EY ED L L T G N R IF KA R TK GVG VLSA E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 247 WE V QWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L ERI P G GP YENLEIRRFDRVRNPEWNDF E YRFIS - K KPSPT F ELSKQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPPKEEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824663940 326 L Y VR VE A P K GELG IF L IG D QNVF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
8.74e-160
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 454.11
E-value: 8.74e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 9 NL MI V N M GP H HPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITIN A P E Q 88
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCL A V E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGG I A A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGG V A L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 169 HG W IDKCLD F CDY F LR R VAE Y QK L ITQ N P I FLE R VE GVG IIGGEE A IN WGL S GPMLR A SGI Q WD L RK VDH YE C YDE F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PK R LRD Y ET L LNE N R I WKQ R TQ GVG VVSAKD A LD WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 249 V QWQKE GD SLA RYL V R IS EM T ESIKII Q Q A LE RI P G GP Y enleirrfd RVR NP ewndf EYRFIS K KPSP T -------- F E 320
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I --------- KAD NP ----- KLAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 321 L SKQ ------- E L YV RV E A PKGELG IFL I G D QNVF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
1.86e-144
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 410.62
E-value: 1.86e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GG I A A DLP H G WID K CLD F C DYF LR R VA EY QK L I T Q N P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GG V A R DLP E G FLE K IRE F L DYF PK R LD EY ED L L T R N R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 205 GVG IIGG E E A INW G LS GPMLRASG IQ WDLRK VDH Y EC YDE F D WE V QWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L ERI P G 284
Cdd:pfam00346 81 GVG VLSA E D A LAL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 285 GP Y -- ENLE I RRFDRVRNPE - WNDFEYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IF L IG D QNVF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPKEEMKT s MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 1824663940 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 906.38
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 1 MT A PATRK N LMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V PATRK D LMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 81 IT I NAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 IT V NAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 161 GG I AADLP H GWIDKCLDFCDYFL RR VAEYQKLIT Q NPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GG V AADLP Y GWIDKCLDFCDYFL TG VAEYQKLIT R NPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 241 CYDEFDWEVQWQKEGDSLARYLVRI S EMTESIKIIQQALE R IPGGPYENLE I RRFDR VRNP EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWEVQWQKEGDSLARYLVRI G EMTESIKIIQQALE G IPGGPYENLE A RRFDR EKDS EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1824663940 321 LSKQELYVRVEAPKGELGIFLIGD QN VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD DS VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
1-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 740.01
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 1 M TAPA TR KNL M IV N M GPHHPSMHGVLRLIVTLDGEDV I DCEP IL GYLHRGMEKIAENRT IIQ Y L PYV T RWDY L A T MF T EA 80
Cdd:PRK07415 1 M AQLE TR TEP M VL N F GPHHPSMHGVLRLIVTLDGEDV V DCEP VI GYLHRGMEKIAENRT NVM Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 81 IT I NAPE Q L G NI Q VPKRASYIRVIMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE L IYDL F EAATG M R MM - H NYFR 159
Cdd:PRK07415 81 IT V NAPE K L A NI P VPKRASYIRVIMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE M IYDL W EAATG Q R LI n N NYFR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 160 IGG I AADLP H GW ID KCLDFCDYF LRRVA EY Q KLIT Q NPIF LE R V EG V G I I GG EEAINWGLSGPMLRASG IQ WDLRKVDHY 239
Cdd:PRK07415 161 IGG V AADLP Y GW LE KCLDFCDYF GPKID EY E KLIT N NPIF RR R I EG L G T I SR EEAINWGLSGPMLRASG VK WDLRKVDHY 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 240 ECYD E FDW E V Q W QK EGD S LARY L VRI S EM T ES I KII Q QA LER IPGGPYENLE IR R FDRVRNP EWN D F E Y RFIS KK PS PTF 319
Cdd:PRK07415 241 ECYD D FDW D V A W ET EGD C LARY R VRI E EM R ES V KII R QA CKG IPGGPYENLE AK R MAEGKKS EWN G F D Y QYVA KK VA PTF 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1824663940 320 ELSKQ ELYVR V E AP KGELGIF LI G DQN V F PWRWKIR PPG F I NLQILP Q L V K RM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 321 KIPNG ELYVR L E SG KGELGIF IQ G NND V T PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 588.58
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 7 RKNL M IV NMGP H HPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AITIN A P 86
Cdd:COG0649 3 ETEE M VL NMGP Q HPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAYVL A V 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGG IAA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGG VRR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 167 LP H G WID K CLD F C DYF LR R VA EY QK L I T Q N P IF LE R VE GVG IIGG E E AI NW G LS GP M LRASG IQW DLRK VDH Y EC YDE F D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PK R LD EY ED L L T G N R IF KA R TK GVG VLSA E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 247 WE V QWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L ERI P G GP YENLEIRRFDRVRNPEWNDF E YRFIS - K KPSPT F ELSKQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPPKEEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824663940 326 L Y VR VE A P K GELG IF L IG D QNVF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
6-393
3.46e-175
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 493.52
E-value: 3.46e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 6 TRKNLMIV N M GP H HP SM HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AE N RT II Q YL PY VT R W DY LAT M FT E AITIN A 85
Cdd:PRK06075 2 AEIRNYTL N F GP Q HP AA HGVLRLI LE LDGE V V VRAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCL A 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 86 P E Q L GN I Q VP K RA S YIRV IM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE LIY DL F EA A TG M RM M H N Y F R I GG IAA 165
Cdd:PRK06075 82 V E K L LG I E VP E RA Q YIRV LF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H A Y I R P GG VRR 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 166 DLP H G WIDKCL DF C DYF LR R VAE Y QK L I T Q N P I FLE R VE GVG IIGG E E A INW G LS GPMLRASG IQ WDLRK VDH YE C YDE F 245
Cdd:PRK06075 162 DLP D G LLEDIR DF L DYF PK R LDD Y ET L L T D N R I WKQ R LV GVG VVSK E R A LAL G FT GPMLRASG VA WDLRK SQP YE V YDE L 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 246 D WE V QWQ K E GD SLA RYLVR IS EM TE S IK II Q Q A L E R I -- P G GP Y -- ENLE I --- R R FDRVRNP E wndf EYRFIS K KPSPT 318
Cdd:PRK06075 242 D FD V PVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L D R L rp P P GP V mv DDPK I app A R LEMKTSM E ---- ALIHHF K LVTEG 317
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1824663940 319 F ELSKQ E L Y VR VE A PKGE L G IF L IG D QNVF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 318 F RVPAG E V Y AA VE S PKGE F G VY L VS D GGNK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
11-393
3.38e-161
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 457.24
E-value: 3.38e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 11 M IV N M GP H HPS M HGV L RL IVTL DGE DVIDCE P IL GYLHRG M EK I AE NRTII Q YL PY VT R W DYL AT M FTEAITIN A P E QLG 90
Cdd:PRK12322 7 M LL N V GP Q HPS T HGV F RL VLKI DGE IIVEAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCH A V E TMM 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 91 NIQ VP K RA S Y I RVI ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE L I YD L FEAAT G M R MMH NY F RIGG IAA D L P H G 170
Cdd:PRK12322 87 GLE VP E RA E Y L RVI AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE M I IN L LNELC G A R LTF NY M RIGG VKW D A P D G 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 171 WI D K CLD F CD Y FLRRV A E Y QK L I T Q N P IFL E RV E GVGI IGG EEAI NWG LSG PM LR AS G IQ WDLRK VDH Y EC YD E FD WEVQ 250
Cdd:PRK12322 167 WI E K VKE F VP Y MREQL A G Y HD L V T G N E IFL N RV K GVGI YSA EEAI SYS LSG VN LR CT G VN WDLRK DEP Y SI YD R FD FDIP 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 251 WQKE GD SLA RY LV R IS E MTE S I KII Q QA L E RI P - G GP yenleirrfdrvrnpewndfeyrf ISK K PSPTFELS K Q E L YVR 329
Cdd:PRK12322 247 VGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP ------------------------ VLA K VPKIIKAP K G E A YVR 302
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1824663940 330 V E A P K GE L G IFLIG D QNVF P W R W K I R P P G F I NLQILP Q L V K RMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 303 I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
8.74e-160
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 454.11
E-value: 8.74e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 9 NL MI V N M GP H HPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITIN A P E Q 88
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCL A V E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGG I A A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGG V A L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 169 HG W IDKCLD F CDY F LR R VAE Y QK L ITQ N P I FLE R VE GVG IIGGEE A IN WGL S GPMLR A SGI Q WD L RK VDH YE C YDE F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PK R LRD Y ET L LNE N R I WKQ R TQ GVG VVSAKD A LD WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 249 V QWQKE GD SLA RYL V R IS EM T ESIKII Q Q A LE RI P G GP Y enleirrfd RVR NP ewndf EYRFIS K KPSP T -------- F E 320
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I --------- KAD NP ----- KLAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 321 L SKQ ------- E L YV RV E A PKGELG IFL I G D QNVF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
1.86e-144
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 410.62
E-value: 1.86e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GG I A A DLP H G WID K CLD F C DYF LR R VA EY QK L I T Q N P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GG V A R DLP E G FLE K IRE F L DYF PK R LD EY ED L L T R N R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 205 GVG IIGG E E A INW G LS GPMLRASG IQ WDLRK VDH Y EC YDE F D WE V QWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L ERI P G 284
Cdd:pfam00346 81 GVG VLSA E D A LAL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 285 GP Y -- ENLE I RRFDRVRNPE - WNDFEYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IF L IG D QNVF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPKEEMKT s MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 1824663940 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
8-393
2.25e-133
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 400.69
E-value: 2.25e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 8 KNLM I V N M GP H HP SM HG VL R LIVT LDGE DVI D CEPIL GY L HRG M EKI A E NRTII Q YL PY VT R W DYLA TMFTEAITI N AP E 87
Cdd:PRK13292 402 EETL I L N L GP Q HP GT HG II R FVLK LDGE EIV D MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAYV N SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 88 Q L GN I Q VP K RA S YIRV IML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE L I Y D LF E AA TG M RM MHNY FRIGG I A A DL 167
Cdd:PRK13292 482 T L CG I E VP D RA I YIRV MLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE K I F D IV E MI TG G RM HPAW FRIGG V A E DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 168 P H GW IDKCLD F CDY F LR R VA EY QK L I T Q NPIF LE R VE GVG I I GGE EA IN WG L SGP M LRA S G IQ WDLRK VDH Y EC YD E FD W 247
Cdd:PRK13292 562 P E GW KEAVEA F LRW F PG R LK EY ED L L T G NPIF KA R LK GVG V I TRD EA VE WG I SGP N LRA C G LA WDLRK KMP Y GG YD R FD F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 248 EV QWQKE GD SL ARYLVR IS EM TE S IK I IQ QA LERI PGG PYENLEI R RFDRVRNPEWN D F E --- YR F ISKKPS P T fe LS K Q 324
Cdd:PRK13292 642 EV PTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AAGM PGG RWISDDY R YVLPQKRDTLK D I E sli HH F VNVTRG P A -- PP K G 719
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1824663940 325 E L Y VRV EAPKGE L G I F LIG D QNVFPW R WK IR P P G F INL Q I LP Q L VKRMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 720 E C Y AAI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
9-393
3.52e-121
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 362.70
E-value: 3.52e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 9 NL M IV N M GP H HPS M HG VL R LIVT LDGE DVI DC E P IL GY L HRG M EK IA E NRTIIQ Y L PY VT R W DYL ATMFT E AITIN A P E Q 88
Cdd:PRK11742 190 DF M FL N L GP N HPS A HG AF R IVLQ LDGE EIV DC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPYVL A V E K 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 89 L GN I Q VP K R ASY IRV IML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R EL IYD LF EA A TG M RM MHNY FRIGG I A A DLP 168
Cdd:PRK11742 270 L AG I T VP D R VNV IRV MLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QK IYD VI EA I TG F RM HPAW FRIGG V A H DLP 349
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 169 H GW i D KC L - D F C D YFLR R VA EY Q K LITQ N P I FLE R VE GV GIIGGE EA IN WG LS G PM LRA S GI QW D L RK VDH Y EC Y DE FD W 247
Cdd:PRK11742 350 R GW - D RL L r E F L D WMPK R LD EY E K AALR N S I LKG R TQ GV AAYNAK EA LE WG VT G AG LRA T GI DF D V RK ARP Y SG Y EN FD F 428
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 248 EV QWQKE GD SLA R YL V RIS EM TE S IK II Q Q A L ERI P G GP Y enleir RF D R ------ VRNPEWNDF E --- YR F ISKKPS P T 318
Cdd:PRK11742 429 EV PVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP F ------ KA D H plttpp PKERTLQHI E tli TH F LQVSWG P V 502
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1824663940 319 fe LSKQ E LYVRV EA P KG ELGIF L IG D QNVFPW R WK IR P P G F IN LQ IL P QLVKRMKLA D IMTI LGSID II M GE VDR 393
Cdd:PRK11742 503 -- MPAN E SFQMI EA T KG INSYY L TS D GSTMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
8-385
9.72e-103
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 312.29
E-value: 9.72e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 8 KNLMIVNM GP H H PSMHGVLRLIVTLD GE DVI D C E PI LGY L HRG M EK I AE N R TII Q Y L PYVT R ---------- WD Y latmf 77
Cdd:COG3261 120 EGVHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y ----- 194
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 78 TE A I tinap E QLGN I Q VP K RA S Y I RVI M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE LIY DL F EA A TG M R MMHNY 157
Cdd:COG3261 195 CQ A V ----- E KAAG I E VP P RA Q Y L RVI L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGI 269
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 158 FRI GG IAA DL PHGWIDKC L DFC D YFLRR V A E YQK L ITQN P IF L E R VE G V G IIGG E E A INW G LS GP ML RASG IQW D L R KVD 237
Cdd:COG3261 270 NVP GG VRR DL DPEQLKAI L ERL D ELEEE V K E LVD L FLND P SV L D R LV G T G VLSK E D A RDL G AV GP VA RASG VDR D V R RDH 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824663940 238 H Y EC YDE F D WE V QWQK EGD SL AR Y LVR IS E MT ES IKI I Q QALE RI P G GP yenleirrfdr V R N P EWNDFEYRFI skkpsp 317
Cdd:COG3261 350 P Y AA YDE L D FK V VTET EGD VY AR A LVR LE E IF ES LDL I R QALE KL P E GP ----------- I R V P VPGLPPDGEG ------ 412
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824663940 318 tfelskqel YV RVEAP K GEL GIFLIG D QNVFPW R W KIR P P G F I N LQI L PQLVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 413 --------- LG RVEAP R GEL VHYVRT D GDGRLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
