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Conserved domains on  [gi|1783493153|ref|YP_009716892|]
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NADH-plastoquinone oxidoreductase subunit 1 (chloroplast) [Amelanchier alnifolia]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10000030)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ndhA CHL00032
NADH dehydrogenase subunit 1
1-363 0e+00

NADH dehydrogenase subunit 1


:

Pssm-ID: 214341  Cd Length: 363  Bit Score: 696.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153   1 MIIDTPEVQDIDSFSRLEFFKEVYGILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGT 80
Cdd:CHL00032    1 MIIDTTEVQAINSFSRLESLKEVYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  81 KLLFKENLFPSRGDTRLFSIGPSIAVISILVSYSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLG 160
Cdd:CHL00032   81 KLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 161 GLRAAAQSISYEIPLTLCVLSISLLSNSSSTIDIVEAQSKYGFWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEEL 240
Cdd:CHL00032  161 GLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEEL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 241 VAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNISIPDIYVSELFEINKTCGVFGAIIGIFITLAKTYLFLFI 320
Cdd:CHL00032  241 VAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPELFEINKTGGVFGTTIGIFITLAKTYLFLFI 320
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1783493153 321 PITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 363
Cdd:CHL00032  321 SITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLLSL 363
 
Name Accession Description Interval E-value
ndhA CHL00032
NADH dehydrogenase subunit 1
1-363 0e+00

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 696.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153   1 MIIDTPEVQDIDSFSRLEFFKEVYGILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGT 80
Cdd:CHL00032    1 MIIDTTEVQAINSFSRLESLKEVYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  81 KLLFKENLFPSRGDTRLFSIGPSIAVISILVSYSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLG 160
Cdd:CHL00032   81 KLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 161 GLRAAAQSISYEIPLTLCVLSISLLSNSSSTIDIVEAQSKYGFWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEEL 240
Cdd:CHL00032  161 GLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEEL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 241 VAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNISIPDIYVSELFEINKTCGVFGAIIGIFITLAKTYLFLFI 320
Cdd:CHL00032  241 VAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPELFEINKTGGVFGTTIGIFITLAKTYLFLFI 320
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1783493153 321 PITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 363
Cdd:CHL00032  321 SITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLLSL 363
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
26-361 5.99e-123

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 357.13  E-value: 5.99e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  26 ILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIA 105
Cdd:COG1005     8 LLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILA 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 106 VISILVSYSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL 185
Cdd:COG1005    88 FIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLL 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 186 SNSSSTIDIVEAQSKygfWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265
Cdd:COG1005   168 AGSLNLSEIVEAQAG---GLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 266 VSSLFVTVLYLGGWNISIPDIyvselfeinktcgVFGAIIGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLL 345
Cdd:COG1005   245 LVSALATTLFLGGWLGPFPIL-------------PLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLL 311
                         330
                  ....*....|....*.
gi 1783493153 346 PISLGNLLLTTSFQLF 361
Cdd:COG1005   312 PLSLVNLVLTAAVVLL 327
NADHdh pfam00146
NADH dehydrogenase;
33-355 3.57e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 329.05  E-value: 3.57e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  33 ILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISILVS 112
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 113 YSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSSTI 192
Cdd:pfam00146  82 FAVIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 193 DIVEAQSkygfWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVT 272
Cdd:pfam00146 162 EIVEAQA----GGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAV 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 273 VLYLGGWNISIPdiyvselfeinktcgvfgaIIGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLLPISLGNL 352
Cdd:pfam00146 238 TLFLGGWLGPFP-------------------LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANL 298

                  ...
gi 1783493153 353 LLT 355
Cdd:pfam00146 299 LLT 301
 
Name Accession Description Interval E-value
ndhA CHL00032
NADH dehydrogenase subunit 1
1-363 0e+00

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 696.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153   1 MIIDTPEVQDIDSFSRLEFFKEVYGILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGT 80
Cdd:CHL00032    1 MIIDTTEVQAINSFSRLESLKEVYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  81 KLLFKENLFPSRGDTRLFSIGPSIAVISILVSYSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLG 160
Cdd:CHL00032   81 KLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 161 GLRAAAQSISYEIPLTLCVLSISLLSNSSSTIDIVEAQSKYGFWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEEL 240
Cdd:CHL00032  161 GLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEEL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 241 VAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNISIPDIYVSELFEINKTCGVFGAIIGIFITLAKTYLFLFI 320
Cdd:CHL00032  241 VAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPELFEINKTGGVFGTTIGIFITLAKTYLFLFI 320
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1783493153 321 PITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 363
Cdd:CHL00032  321 SITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLLSL 363
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
26-361 5.99e-123

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 357.13  E-value: 5.99e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  26 ILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIA 105
Cdd:COG1005     8 LLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILA 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 106 VISILVSYSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL 185
Cdd:COG1005    88 FIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLL 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 186 SNSSSTIDIVEAQSKygfWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265
Cdd:COG1005   168 AGSLNLSEIVEAQAG---GLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 266 VSSLFVTVLYLGGWNISIPDIyvselfeinktcgVFGAIIGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLL 345
Cdd:COG1005   245 LVSALATTLFLGGWLGPFPIL-------------PLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLL 311
                         330
                  ....*....|....*.
gi 1783493153 346 PISLGNLLLTTSFQLF 361
Cdd:COG1005   312 PLSLVNLVLTAAVVLL 327
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
26-355 6.88e-119

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 346.79  E-value: 6.88e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  26 ILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIA 105
Cdd:PRK06076    9 LLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIA 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 106 VISILVSYSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL 185
Cdd:PRK06076   89 FIPAFLAWAVIPFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLL 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 186 SNSSSTIDIVEAQSkygfWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265
Cdd:PRK06076  169 AGSLNLSDIVEAQF----LSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMI 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 266 VSSLFVTVLYLGGWNISIPdiyvselfeinktcgVFGAIIGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLL 345
Cdd:PRK06076  245 LVSALITTLFLGGWLPPFP---------------LGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLL 309
                         330
                  ....*....|
gi 1783493153 346 PISLGNLLLT 355
Cdd:PRK06076  310 PLSLVNLLLT 319
NADHdh pfam00146
NADH dehydrogenase;
33-355 3.57e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 329.05  E-value: 3.57e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  33 ILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISILVS 112
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 113 YSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSSTI 192
Cdd:pfam00146  82 FAVIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 193 DIVEAQSkygfWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVT 272
Cdd:pfam00146 162 EIVEAQA----GGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAV 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 273 VLYLGGWNISIPdiyvselfeinktcgvfgaIIGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLLPISLGNL 352
Cdd:pfam00146 238 TLFLGGWLGPFP-------------------LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANL 298

                  ...
gi 1783493153 353 LLT 355
Cdd:pfam00146 299 LLT 301
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
23-357 8.30e-57

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 188.02  E-value: 8.30e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  23 VYGILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGP 102
Cdd:MTH00216    2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 103 SIAVISILVSYSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 182
Cdd:MTH00216   82 VLSFTLALIVWGVIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISV 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 183 SLLSNSSSTIDIVEAQSKYGFWGWNLWrqpIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYL 262
Cdd:MTH00216  162 LLCVGSLSITEIVLAQNNGIWFFFPLF---PVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYA 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 263 NLLVSSLFVTVLYLGGWNISIPDIYvselfeinktcgvfgaiIGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWK 342
Cdd:MTH00216  239 HIILMSCLTTILFLGGWLSPIKYFK-----------------GGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWK 301
                         330
                  ....*....|....*
gi 1783493153 343 FLLPISLGNLLLTTS 357
Cdd:MTH00216  302 SYLPLSLGVVIFVAS 316
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
29-357 2.05e-56

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 186.86  E-value: 2.05e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  29 VLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVIS 108
Cdd:MTH00054    4 IIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTL 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 109 ILVSYSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS 188
Cdd:MTH00054   84 AFIAWGVIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGS 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 189 SSTIDIVEAQSKYgfwgWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSS 268
Cdd:MTH00054  164 LNLTEIVLAQKNI----WFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMS 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 269 LFVTVLYLGGW-NISIPDIYVSELFeinktcgVFGAIIGIFItlaktylFLFIPIttRWTLPRLRMDQLLNLGWKFLLPI 347
Cdd:MTH00054  240 TFGVILFLGGWlVISGPTSYFSNFV-------WFGIKIALII-------FLFIWI--RASYPRIRYDQLMALLWKSYLPL 303
                         330
                  ....*....|
gi 1783493153 348 SLGNLLLTTS 357
Cdd:MTH00054  304 SLAFVVLVSG 313
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
23-355 2.00e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 182.52  E-value: 2.00e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  23 VYGILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGP 102
Cdd:MTH00029    3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 103 SIAVISILVSYSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 182
Cdd:MTH00029   83 IISFTLAILAWAIVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISV 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 183 SLLSNSSSTIDIVEAQSKYgfwgWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYL 262
Cdd:MTH00029  163 ILCVGSLNISEIVISQRSV----WLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYS 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 263 NLLVSSLFVTVLYLGGWNISIPDIYvsELFEINKTCGVFGAIIGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWK 342
Cdd:MTH00029  239 NIILMSCMMTIFFLGGWLSPLDGIP--TPPEAFSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWK 316
                         330
                  ....*....|...
gi 1783493153 343 FLLPISLGNLLLT 355
Cdd:MTH00029  317 TYLPLSLGLVILT 329
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
26-363 2.51e-53

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 178.63  E-value: 2.51e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  26 ILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIA 105
Cdd:MTH00040    3 VILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 106 VISILVSYSVVPFGYHLVlaDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL 185
Cdd:MTH00040   83 LFLALLLWSLIPVPTPTL--NVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 186 SNSSSTIDIVEAQSkygfWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265
Cdd:MTH00040  161 SGSFSLSSISNSQN----GSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANII 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 266 VSSLFVTVLYLGGWNisipdiYVSELFEINKTCGVFGAIIGIFitlaktyLFLFIpittRWTLPRLRMDQLLNLGWKFLL 345
Cdd:MTH00040  237 FMNLLSVILFLGGGS------PFNEIFPINIIIVGIKTTFLVF-------LFLWV----RASYPRFRYDQLMFLTWKNYL 299
                         330
                  ....*....|....*...
gi 1783493153 346 PISLGnLLLTTSFQLFSL 363
Cdd:MTH00040  300 PLSIG-LLIFYLLLLSLL 316
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
38-354 1.50e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 171.21  E-value: 1.50e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  38 VGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISILVSYSVVP 117
Cdd:MTH00143   12 LCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYP 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 118 FGYHLVLADLniGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVlsiSLLSNSSSTIDIVEA 197
Cdd:MTH00143   92 SYFSSSYFGW--GLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLIL---LFPLFLSGSFSFIEI 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 198 qSKYGFWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLG 277
Cdd:MTH00143  167 -SESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFG 245
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1783493153 278 GWNISipdiyvselfeinktcGVFGAIIGIFITLAKTYLFLFIpittRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 354
Cdd:MTH00143  246 GSSVL----------------FLLGGVVFMFKVLFFAFLFIWV----RASYPRFRYDLLMMLCWKSFLPFSLSILVL 302
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
30-358 4.48e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 170.46  E-value: 4.48e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  30 LVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISI 109
Cdd:MTH00111    8 LINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLA 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 110 LVSYSVVPFGYHLvlADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLS--N 187
Cdd:MTH00111   88 LTIWTPLPMPFPL--ADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSggY 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 188 SSSTIDIVEAQSKYGFWGWNL---WrqpigfiifIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNL 264
Cdd:MTH00111  166 TLQTLATTQEPLWLIFSSWPLammW---------YISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 265 LVSSLFVTVLYLGGWNISIPdiyvSELFEINKtcgvfgaiigIFITLAKTYLFLFIpittRWTLPRLRMDQLLNLGWKFL 344
Cdd:MTH00111  237 LLMNTLTTILFLNPSTLNLP----PELFTINL----------MTKTLLLTSGFLWI----RASYPRFRYDQLMHLLWKQF 298
                         330
                  ....*....|....
gi 1783493153 345 LPISLGNLLLTTSF 358
Cdd:MTH00111  299 LPLTLALCLWHTSM 312
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
33-360 1.28e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 168.68  E-value: 1.28e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  33 ILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISILVS 112
Cdd:MTH00225    7 FLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLIL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 113 YSVVPFGYHLVlaDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSSTI 192
Cdd:MTH00225   87 WSLYPSMFSIY--SFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLF 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 193 DIVEAQSKYgfwgWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVT 272
Cdd:MTH00225  165 DFSYNQKYF----WFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 273 VLYLGGWNISIPdiyvselfeinktcgvfgaiigiFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLLPISLGNL 352
Cdd:MTH00225  241 ILFFGGFFVTID-----------------------LFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYL 297

                  ....*...
gi 1783493153 353 LLTTSFQL 360
Cdd:MTH00225  298 FMVLIILM 305
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
30-357 1.52e-47

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 163.64  E-value: 1.52e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  30 LVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISI 109
Cdd:MTH00104    3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 110 LVSYSVVPFGYHLVlaDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL--SN 187
Cdd:MTH00104   83 LTMWIPLPMPYPLI--NMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMngSF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 188 SSSTIDIVEAQSKYGFWGWNL---WrqpigfiifIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNL 264
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLammW---------FISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANI 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 265 LVSSLFVTVLYLGGWNisipDIYVSELFEINKTCGvfgaiigifiTLAKTYLFLFIpittRWTLPRLRMDQLLNLGWKFL 344
Cdd:MTH00104  232 IMMNALTTILFLGAFH----NPYMPELYTTNFTIK----------TLLLTILFLWI----RASYPRFRYDQLMHLLWKNF 293
                         330
                  ....*....|...
gi 1783493153 345 LPISLGNLLLTTS 357
Cdd:MTH00104  294 LPLTLALCMWHIS 306
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
30-358 8.69e-47

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 161.23  E-value: 8.69e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  30 LVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISI 109
Cdd:MTH00218    5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 110 LVSYSVVPFGYhlVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSS 189
Cdd:MTH00218   85 LLLWMPLPLPF--SLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGF 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 190 STIDIVEAQSKYgfwgWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSL 269
Cdd:MTH00218  163 SLEGFNLTQETI----WLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNT 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 270 FVTVLYLGGWNISIPDiyvselfeinktcgvfgaiigIFITLAKTYLFLFIpittRWTLPRLRMDQLLNLGWKFLLPISL 349
Cdd:MTH00218  239 LSVILFLGTSLTTINL---------------------MLKATLLVFLFLWV----RASLPRFRYDQLMHLAWKNFLPLSL 293

                  ....*....
gi 1783493153 350 GNLLLTTSF 358
Cdd:MTH00218  294 ALLLLHTSL 302
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
26-361 1.01e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 161.09  E-value: 1.01e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  26 ILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIA 105
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 106 VISILVSYSVVPFGYHLVlaDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL 185
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLI--SFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 186 SNSSSTIDIVEAQSKygfwGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265
Cdd:MTH00193  159 IGSFNLLDFMNYQKY----IWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSIL 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 266 VSSLFVTVLYLGGWNISipdiyvselfeinktcgvfgaiigiFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLL 345
Cdd:MTH00193  235 FMSMLFVLMFLGGDLLS-------------------------LLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFL 289
                         330
                  ....*....|....*.
gi 1783493153 346 PISLGNLLLTTSFQLF 361
Cdd:MTH00193  290 PLSLNYLLFFFGLKIF 305
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
26-363 4.52e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 159.79  E-value: 4.52e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  26 ILWVLVPILtLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIA 105
Cdd:MTH00071    5 ISLIINPLL-YIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMA 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 106 VISILVSYSVVPFGYHLvlADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL 185
Cdd:MTH00071   84 LTLALIIWTPLPMPNNL--SNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 186 SNSSSTIDIVEAQSKYGFW--GWNL---WrqpigfiifIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVAS 260
Cdd:MTH00071  162 TGGFSLMNFNTTQEFMWLIipAWPMaamW---------FISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 261 YLNLLVSSLFVTVLYLGgwniSIPDIYVSELFEINKtcgvfgaiigIFITLAKTYLFLFIpittRWTLPRLRMDQLLNLG 340
Cdd:MTH00071  233 YANILMMNTLSTILFLG----STYNHLQPELSTMNL----------MIKASILSMLFLWV----RASYPRFRYDQLMHLV 294
                         330       340
                  ....*....|....*....|...
gi 1783493153 341 WKFLLPISLGNLLLTTSFQLFSL 363
Cdd:MTH00071  295 WKNFLPITLAMTIFHISLPISTL 317
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
26-354 1.01e-45

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 158.37  E-value: 1.01e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  26 ILWVLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIA 105
Cdd:MTH00195    1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 106 VISILVSYSVVPFGYHLVlaDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL 185
Cdd:MTH00195   81 LALALILWVPIPSPFGFS--SINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 186 SNSSSTIDIVEAQSKYgfwgWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265
Cdd:MTH00195  159 AGSFDFTIMVISQGFS----WVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNII 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 266 VSSLFVTVLYLGGWnisipdiyvselfeinktcgvfgaiiGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLL 345
Cdd:MTH00195  235 FMSVLTTILFLGGG--------------------------GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYL 288

                  ....*....
gi 1783493153 346 PISLGNLLL 354
Cdd:MTH00195  289 PLILSLLIP 297
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
50-363 1.65e-45

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 158.02  E-value: 1.65e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  50 LEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISILVSYSVVPFGYHLVLadLNI 129
Cdd:MTH00010   26 LERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKHPSFF--LKF 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 130 GVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSSTIDIVEAQSKygfwgWNLW 209
Cdd:MTH00010  104 SILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQYS-----WILL 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 210 RQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGgwniSIPDIYVS 289
Cdd:MTH00010  179 MIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTS----FIPSIFIS 254
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1783493153 290 ELFEINKTcgvfgaiigifITLAktylFLFIPIttRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 363
Cdd:MTH00010  255 DLMLILKT-----------VFLA----FLFIWI--RATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
34-349 1.47e-43

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 153.22  E-value: 1.47e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  34 LTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISILVSY 113
Cdd:MTH00134   13 LAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLW 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 114 SVVPFGYHLvlADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLS--NSSST 191
Cdd:MTH00134   93 APMPMPYPV--TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTggFTLQT 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 192 IDIVEAQSKYGFWGWNL---WrqpigfiifIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSS 268
Cdd:MTH00134  171 FNTAQESIWLLLPAWPLaamW---------YISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 269 LFVTVLYLGGWNI-SIPdiyvsELFEINktcgvfgaiigifiTLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLLPI 347
Cdd:MTH00134  242 TLSAILFLGASHIpTLP-----ELTTIN--------------LMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPL 302

                  ..
gi 1783493153 348 SL 349
Cdd:MTH00134  303 TL 304
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
33-349 4.64e-30

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 116.15  E-value: 4.64e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  33 ILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISILVS 112
Cdd:MTH00090    2 LLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 113 YSVVPFGYHLVLADLNIGVFLWIAISSIAPIglLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSisllsnsssti 192
Cdd:MTH00090   82 WFVLPYFFDFLSFEYSLLFFLCLIGFSVYTT--LISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLS----------- 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 193 dIVEAQSKYGFWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVT 272
Cdd:MTH00090  149 -IMLHNNSFSFVSSFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTS 227
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1783493153 273 VLYLGgwnisipdiyvselfeinktcgvfgaiigifITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLLPISL 349
Cdd:MTH00090  228 VLFFK-------------------------------FSFLMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
29-354 1.21e-26

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 107.58  E-value: 1.21e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  29 VLVPILTLVVGITIGVLVIVWLeREISAGIQQRIGPeyagplGVLQALADGTKLLFKENLFPsRGDTRLFSIGPSIAVIS 108
Cdd:COG0650     4 ILLALLQLLLALLLAPLLLGII-RKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVALAA 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 109 ILVSYSVVPFGYHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS 188
Cdd:COG0650    76 MLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGS 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 189 SSTIDIVEAQSKYGFWGWNLWRqPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLV-S 267
Cdd:COG0650   156 TSLSDIVAYQAAHGPLLLSPSL-LLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVlL 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 268 SLFVTVLYlgGWNISIPdiyvselfeinktcgvfgAIIGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLLPI 347
Cdd:COG0650   235 SLFVNLFL--PWGIALT------------------LLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLA 294

                  ....*..
gi 1783493153 348 SLGNLLL 354
Cdd:COG0650   295 LLALLLA 301
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
51-349 1.19e-25

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 104.62  E-value: 1.19e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153  51 EREISAGIQQRIGPEYAGPLGVLQALADGTKLL--FKENLFPSRGdtrLFSIGPSIAVISILVSYSVVPFGYHLVLADLN 128
Cdd:MTH00058   25 ERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVvkFKVYGFQSRS---WFSLFGVFLLVLLVVFYCFIYGSYYSGSYSSL 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 129 IgvFLWI-AISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSSTIDIveaqskYGFWGWN 207
Cdd:MTH00058  102 S--LLWFlVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDF------YYSGWLS 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783493153 208 LWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNISipdiy 287
Cdd:MTH00058  174 VLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFVS----- 248
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1783493153 288 vselfeinktcgvfgaIIGIFitlaktYLFLFipITTRWTLPRLRMDQLLNLGWKFLLPISL 349
Cdd:MTH00058  249 ----------------IMLLF------HLLFF--MWARATLPRVRYDYFVNFFWEYCLVLLI 286
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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