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Conserved domains on  [gi|1489134487|ref|YP_009518803|]
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putative methyltransferase YfdM [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dam super family cl05442
DNA N-6-adenine-methyltransferase (Dam); This family consists of several bacterial and phage ...
 14-89 1.78e-36

DNA N-6-adenine-methyltransferase (Dam); This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences.


The actual alignment was detected with superfamily member TIGR01712:

Pssm-ID: 446687  Cd Length: 166  Bit Score: 120.83  E-value: 1.78e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1489134487  14 NKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERlaelkGAAFGNPPY 89
Cdd:TIGR01712   1 YKGTNTPDAVRDLWSTPREVFAYLEGRYGKFDLDAAASEENAVCAKFYTQEDNALKRWWGKN-----KAVWLNPPY 71
 
Name Accession Description Interval E-value
phage_N6A_met TIGR01712
phage N-6-adenine-methyltransferase; This model is a fragment-mode model for a phage-borne DNA ...
 14-89 1.78e-36

phage N-6-adenine-methyltransferase; This model is a fragment-mode model for a phage-borne DNA N-6-adenine-methyltransferase. [Mobile and extrachromosomal element functions, Prophage functions, DNA metabolism, Restriction/modification]


Pssm-ID: 273769  Cd Length: 166  Bit Score: 120.83  E-value: 1.78e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1489134487  14 NKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERlaelkGAAFGNPPY 89
Cdd:TIGR01712   1 YKGTNTPDAVRDLWSTPREVFAYLEGRYGKFDLDAAASEENAVCAKFYTQEDNALKRWWGKN-----KAVWLNPPY 71
Dam pfam05869
DNA N-6-adenine-methyltransferase (Dam); This family consists of several bacterial and phage ...
 17-89 3.29e-26

DNA N-6-adenine-methyltransferase (Dam); This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences.


Pssm-ID: 428655  Cd Length: 165  Bit Score: 94.52  E-value: 3.29e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1489134487  17 AHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERlaelkGAAFGNPPY 89
Cdd:pfam05869   2 SNTPKEVRDLWQTPDAVFWYLEAEFGKFDLDAAADEHNAKCPRFYTEEDNALISDWQKY-----GKIWCNPPY 69
 
Name Accession Description Interval E-value
phage_N6A_met TIGR01712
phage N-6-adenine-methyltransferase; This model is a fragment-mode model for a phage-borne DNA ...
 14-89 1.78e-36

phage N-6-adenine-methyltransferase; This model is a fragment-mode model for a phage-borne DNA N-6-adenine-methyltransferase. [Mobile and extrachromosomal element functions, Prophage functions, DNA metabolism, Restriction/modification]


Pssm-ID: 273769  Cd Length: 166  Bit Score: 120.83  E-value: 1.78e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1489134487  14 NKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERlaelkGAAFGNPPY 89
Cdd:TIGR01712   1 YKGTNTPDAVRDLWSTPREVFAYLEGRYGKFDLDAAASEENAVCAKFYTQEDNALKRWWGKN-----KAVWLNPPY 71
Dam pfam05869
DNA N-6-adenine-methyltransferase (Dam); This family consists of several bacterial and phage ...
 17-89 3.29e-26

DNA N-6-adenine-methyltransferase (Dam); This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences.


Pssm-ID: 428655  Cd Length: 165  Bit Score: 94.52  E-value: 3.29e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1489134487  17 AHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERlaelkGAAFGNPPY 89
Cdd:pfam05869   2 SNTPKEVRDLWQTPDAVFWYLEAEFGKFDLDAAADEHNAKCPRFYTEEDNALISDWQKY-----GKIWCNPPY 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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