NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1215836320|ref|YP_009390308|]
View 

NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Abelmoschus esculentus]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit J( domain architecture ID 10000005)

NAD(P)H-quinone oxidoreductase subunit J is part of the complex that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-158 6.77e-135

NADH dehydrogenase subunit J


:

Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 372.11  E-value: 6.77e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320   1 MQGRLSVWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQ 80
Cdd:CHL00012    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQ 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1215836320  81 PEEVCIKVFAPRSNPRIPSVFWVWKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
Cdd:CHL00012   81 PEEVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
 
Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-158 6.77e-135

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 372.11  E-value: 6.77e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320   1 MQGRLSVWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQ 80
Cdd:CHL00012    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQ 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1215836320  81 PEEVCIKVFAPRSNPRIPSVFWVWKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
Cdd:CHL00012   81 PEEVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
29-152 6.94e-48

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 150.71  E-value: 6.94e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  29 LQIKPEDWHSIAVILY--VYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYgvdqPEEVCIKVFAPRsNPRIPSVFWVWKS 106
Cdd:pfam00329   1 VTVDPEDLLEVARFLRddELGFDHLSDLTGVDYPEEGRFEVVYHLLSITH----NVRVRVKVPLED-DPVVPSVTDIWPG 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1215836320 107 ADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFY 152
Cdd:pfam00329  76 ANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 25-156 1.18e-46

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 149.21  E-value: 1.18e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  25 GIETLQIKPEDWHSIAVILY-VYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGvdqpEEVCIKVFAPRSNPRIPSVFW 102
Cdd:COG0852    27 GELTLTVPPEDLVDVARFLRdDLGFDHLSDLTGVDyPERGDRFEVVYHLLSLTHN----RRLRLKVFVPRDDPVVPSVTD 102

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1215836320 103 VWKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQD 156
Cdd:COG0852   103 VWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRY 156
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 47-146 4.51e-29

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 103.08  E-value: 4.51e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  47 GYNYLRSQCAYDVAPGGLLASVYHLtrieYGVDQPEEVCIKVFAPRSNPrIPSVFWVWKSADFQERESYDMLGISYENHP 126
Cdd:TIGR01961  23 GFELLTDVSGVDYPKEKRFEVVYHL----LSIKKNRRIRLKVRLSEDDP-VPSLTSVFPTANWYERETYDMYGIVFDGHP 97

                          90       100
                  ....*....|....*....|
gi 1215836320 127 RLKRILMPESWIGWPLRKDY 146
Cdd:TIGR01961  98 DLRRILMPDDFEGHPLRKDY 117
 
Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-158 6.77e-135

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 372.11  E-value: 6.77e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320   1 MQGRLSVWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQ 80
Cdd:CHL00012    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQ 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1215836320  81 PEEVCIKVFAPRSNPRIPSVFWVWKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
Cdd:CHL00012   81 PEEVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
PRK12494 PRK12494
NAD(P)H-quinone oxidoreductase subunit J;
3-157 3.20e-82

NAD(P)H-quinone oxidoreductase subunit J;


Pssm-ID: 183557 [Multi-domain]  Cd Length: 172  Bit Score: 239.47  E-value: 3.20e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320   3 GRLSVWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPE 82
Cdd:PRK12494   17 GPVSQWLTENGFEHESLGPDHLGVEIIKVEPDFLLPIATALYAYGFNYLQCQGGYDEGPGKELVSFYHLIKVSDNADKPR 96

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1215836320  83 EVCIKVFAPRSNPRIPSVFWVWKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDA 157
Cdd:PRK12494   97 EVRLKVFLPRDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDYIQPDFYELQDA 171
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
29-152 6.94e-48

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 150.71  E-value: 6.94e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  29 LQIKPEDWHSIAVILY--VYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYgvdqPEEVCIKVFAPRsNPRIPSVFWVWKS 106
Cdd:pfam00329   1 VTVDPEDLLEVARFLRddELGFDHLSDLTGVDYPEEGRFEVVYHLLSITH----NVRVRVKVPLED-DPVVPSVTDIWPG 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1215836320 107 ADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFY 152
Cdd:pfam00329  76 ANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 25-156 1.18e-46

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 149.21  E-value: 1.18e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  25 GIETLQIKPEDWHSIAVILY-VYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGvdqpEEVCIKVFAPRSNPRIPSVFW 102
Cdd:COG0852    27 GELTLTVPPEDLVDVARFLRdDLGFDHLSDLTGVDyPERGDRFEVVYHLLSLTHN----RRLRLKVFVPRDDPVVPSVTD 102

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1215836320 103 VWKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQD 156
Cdd:COG0852   103 VWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRY 156
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 47-146 4.51e-29

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 103.08  E-value: 4.51e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  47 GYNYLRSQCAYDVAPGGLLASVYHLtrieYGVDQPEEVCIKVFAPRSNPrIPSVFWVWKSADFQERESYDMLGISYENHP 126
Cdd:TIGR01961  23 GFELLTDVSGVDYPKEKRFEVVYHL----LSIKKNRRIRLKVRLSEDDP-VPSLTSVFPTANWYERETYDMYGIVFDGHP 97

                          90       100
                  ....*....|....*....|
gi 1215836320 127 RLKRILMPESWIGWPLRKDY 146
Cdd:TIGR01961  98 DLRRILMPDDFEGHPLRKDY 117
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 28-146 1.04e-28

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 104.22  E-value: 1.04e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  28 TLQIKPEDWHSIAVIL---YVYGYNYLRSQCAYD-VAPGGLLASVYHLtrieYGVDQPEEVCIKVFAPRsNPRIPSVFWV 103
Cdd:PRK06074   30 TLKVPAEKILEVLTFLrddPELRFEQLIDLTGVDyPERGKRFEVVYHL----LSYKHNVRLRVKVRAPE-DPVVPSVVDI 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1215836320 104 WKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK06074  105 WPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDF 147
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
28-146 2.18e-26

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 102.75  E-value: 2.18e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  28 TLQIKPEDWHSIAVILYVY---GYNYLRSQCAYDVAPGglLASVYHLtrIEYGVDQPeeVCIKVFAPRSNPRIPSVFWVW 104
Cdd:PRK07735  308 TLVVEPEKYYEVAELLRFHeqlAFDYLSELHGTDFVTH--MEVYVHL--YSYGKRQS--VAVKVKLDREAPQVESVTPLW 381

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1215836320 105 KSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK07735  382 KGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 65-146 6.29e-26

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 98.14  E-value: 6.29e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  65 LASVYHLTRIEYGvdqpEEVCIKVFAPRSNPRIPSVFWVWKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRK 144
Cdd:PRK07785  134 LHAVYHLTSITHN----RRIRLEVAVPDADPHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRK 209


                  ..
gi 1215836320 145 DY 146
Cdd:PRK07785  210 DY 211
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 25-148 8.12e-23

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 93.45  E-value: 8.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  25 GIETLQIKPEDWhsIAVILYVYG----YNYLRSQCAYD----VAPGGLLAS----VYHLTRIEYGVDqpeeVCIKVFAPR 92
Cdd:PRK11742   22 GIPVVWVKREQL--LEVLRFLRKlpkpYVMLFDLHGIDerlrTHREGLPAAdftvFYHLISIERNRD----IMLKVALSE 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1215836320  93 SNPRIPSVFWVWKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIA 148
Cdd:PRK11742   96 NDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPA 151
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
28-146 1.03e-21

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 87.81  E-value: 1.03e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  28 TLQIKPEDWHSIAVILYVYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEygvdQPEEVCIKVFAPRsNPRIPSVFWVWKS 106
Cdd:PRK08491   60 VIWIKKDDNFKVLKILKHLGYECLSEMSAIDfLAKKGGFEVFYQLLSMS----KRKRVRVKCFLKE-KEALQSVSFLFKS 134

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1215836320 107 ADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK08491  135 ANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSY 174
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
68-146 1.58e-19

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 84.06  E-value: 1.58e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215836320  68 VYHLTRIeygvDQPEEVCIKVFAPRSNPRIPSVFWVWKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK13292  296 NYHLLSF----DTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEH 370
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
28-149 1.73e-14

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 69.59  E-value: 1.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215836320  28 TLQIKPEDWHSIAVILYVYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGVDqpeeVCIKVFAPRSNPRIPSVFWVWKS 106
Cdd:COG3262    27 WVEVDREDLPELAEFLAEGGGGRLAALWGNDeRELGGGFAVYYVFALEGEGAL----VTLKVSVPKDDPVFPSITDLFPA 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1215836320 107 ADFQERESYDMLGISYENHPRLKRILMPESW-IGW-PLRKDYIAP 149
Cdd:COG3262   103 ASWYEREIRDLFGIVPEGHPDPRRLVLHDDWpEGIyPLRKDFKGG 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH