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Conserved domains on  [gi|769829706|ref|YP_009128788|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Urocyon cinereoargenteus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 3.86e-71

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 207.48  E-value: 3.86e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMTLTTNVVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 769829706  81 TNKLTTMLIMALLLISILAASLAYEWAEKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 3.86e-71

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 207.48  E-value: 3.86e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMTLTTNVVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 769829706  81 TNKLTTMLIMALLLISILAASLAYEWAEKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.01e-31

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 107.12  E-value: 1.01e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   18 VMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNKL-TTMLIMALLLIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELgWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 769829706   97 ILAASLAYEWAEKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-113 3.68e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 86.33  E-value: 3.68e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706  11 VVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNKL-TTMLI 89
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELgWFGLI 93

                         90       100
                 ....*....|....*....|....
gi 769829706  90 MALLLISILAASLAYEWAEKGLEW 113
Cdd:COG0838   94 EMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 3.86e-71

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 207.48  E-value: 3.86e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMTLTTNVVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 769829706  81 TNKLTTMLIMALLLISILAASLAYEWAEKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 4.77e-46

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 144.29  E-value: 4.77e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMT-LTTNVVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00136   1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 769829706  80 QTNKLTTMLIMALLLISILAASLAYEWAEKGLEWTE 115
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 3.49e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 142.06  E-value: 3.49e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   3 MMMTLTTNVVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTN 82
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 769829706  83 KLTTMLIMALLLISILAASLAYEWAEKGLEWTE 115
Cdd:MTH00069  82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 4.76e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 134.24  E-value: 4.76e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMTLTTNVVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 769829706  81 TNKLTTMLIMALLLISILAASLAYEWAEKGLEWT 114
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 1.50e-38

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 125.48  E-value: 1.50e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMTLTTNVVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 769829706  81 TNKLTTMLIMALLLISILAASLAYEWAEKGLEWTE 115
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 3-113 1.98e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 112.30  E-value: 1.98e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   3 MMMTLTTNVVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTN 82
Cdd:MTH00203   4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLS 83

                         90       100       110
                 ....*....|....*....|....*....|.
gi 769829706  83 KLTTMLIMALLLisILAASLAYEWAEKGLEW 113
Cdd:MTH00203  84 SLSLLLAFLFLI--LLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.01e-31

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 107.12  E-value: 1.01e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   18 VMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNKL-TTMLIMALLLIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELgWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 769829706   97 ILAASLAYEWAEKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 2.45e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 96.85  E-value: 2.45e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMTLTTNVVLASLLVMIAFWLPQLNIYA-DKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDrEKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 769829706  80 QTNKLTTMLIMALLLISILAASLAYEWAEKGLEWTE 115
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-113 5.58e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 90.61  E-value: 5.58e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   3 MMMTLTTNVVLASLLVMIAFWLPQLNIYAD--KTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDreKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 769829706  81 TNKLTTMLIMALLLISILAASLAYEWAEKGLEW 113
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 3-113 5.22e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 88.51  E-value: 5.22e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   3 MMMTLTTNVV--LASLLVMIAFWLPQLNIYAD--KTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00202   1 MLLILFMSILsiLISSLLFLVSWMLSFRSLMDreKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 769829706  79 SQTNKLTTMLIMALLLISILAASLAYEWAEKGLEW 113
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-113 3.68e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 86.33  E-value: 3.68e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706  11 VVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNKL-TTMLI 89
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELgWFGLI 93

                         90       100
                 ....*....|....*....|....
gi 769829706  90 MALLLISILAASLAYEWAEKGLEW 113
Cdd:COG0838   94 EMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-114 3.52e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 83.75  E-value: 3.52e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMTLTTNVVLASLLVMIAFWLPQLNIYAD--KTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADreKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 769829706  79 SQTNKLTTMLIMALLLISILAASLAYEWAEKGLEWT 114
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-113 4.47e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 83.61  E-value: 4.47e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706  32 DKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNKLTTMLIMALLLIsILAASLAYEWAEKGL 111
Cdd:MTH00055  37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLI-ILTIGLIYEWVKGGL 115


                 ..
gi 769829706 112 EW 113
Cdd:MTH00055 116 EW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 3.31e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 78.56  E-value: 3.31e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMTLTTNVVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQ 80
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 769829706  81 TNKLT--TMLIMALLLIsILAASLAYEWAEKGLEW 113
Cdd:MTH00018  79 YNQIApfGFWTMVGFLF-ILTLGLIYEWIKGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 11-114 3.71e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 78.75  E-value: 3.71e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706  11 VVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNKLT-TMLI 89
Cdd:PRK06602  19 IGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGwLGFV 96

                         90       100
                 ....*....|....*....|....*
gi 769829706  90 MALLLISILAASLAYEWAEKGLEWT 114
Cdd:PRK06602  97 EAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 16-113 1.82e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 69.58  E-value: 1.82e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706  16 LLVMIAFWLPQLNIY-----ADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNKLTTMLIM 90
Cdd:MTH00030  21 LLVSISFTLGNSRIGltkpdSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIV 100

                         90       100
                 ....*....|....*....|...
gi 769829706  91 ALLLIsILAASLAYEWAEKGLEW 113
Cdd:MTH00030 101 YTFLI-VLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 12-114 6.85e-12

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 57.30  E-value: 6.85e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706  12 VLASLLVMIAFWLPQL----NIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNKL-TT 86
Cdd:CHL00022  15 IISSLIPILAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLgVS 92

                         90       100
                 ....*....|....*....|....*...
gi 769829706  87 MLIMALLLISILAASLAYEWAEKGLEWT 114
Cdd:CHL00022  93 AFIEALIFVLILIVGLVYAWRKGALEWS 120
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 3.15e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 55.83  E-value: 3.15e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706  33 KTSPYECGFDPMGSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWASQTNKLTT--MLIMALLLISILAAsLAYEWAE 108
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVfgLVEMALFMLTVFVA-YAYVWRR 113


                 ....*.
gi 769829706 109 KGLEWT 114
Cdd:PRK07928 114 GGLEWD 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
31-113 1.35e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 51.67  E-value: 1.35e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706  31 ADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPlpWASQTNKLTTM-LIMALLLISILAASLAYEWAEK 109
Cdd:PRK07756  40 AAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLFaLIEMLIFVVMLLVGLAYAWKKK 117


                 ....
gi 769829706 110 GLEW 113
Cdd:PRK07756 118 VLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 2.48e-07

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 45.81  E-value: 2.48e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706  33 KTSPYECGFDPMGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNKLTTM-LIMALLLISILAASLAYEWAEKGL 111
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFgLIEMLLFIVLLTIGFIYAWKKGAL 123


                 ..
gi 769829706 112 EW 113
Cdd:PRK08489 124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 6.18e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 44.50  E-value: 6.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMTLTTNVVLASLLVMIAFWLPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDF 81

                         90       100       110
                 ....*....|....*....|....*....|....
gi 769829706  81 TNKLTTMLIMALLLISILaaslaYEWAEKGLEWT 114
Cdd:MTH00092  82 SSLISFFMLMIFIFFGFY-----MEWWYGKLIWV 110
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-76 3.64e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.88  E-value: 3.64e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 769829706  35 SPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 1-104 7.43e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 33.81  E-value: 7.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769829706   1 MNMMMTLTTnVVLASLLVMIAFW--------LPQLNIYADKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALL 72
Cdd:PRK06073   1 MSFMQAALA-FGLVIVLGLAAGVgtykllklILPSKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLL 79

                         90       100       110
                 ....*....|....*....|....*....|..
gi 769829706  73 LPLPWASQTNkLTTMLIMALLLISILAASLAY 104
Cdd:PRK06073  80 LLIAFAPYYT-FRDLLLLIVVALVLMYPVLYY 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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