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Conserved domains on  [gi|383931305|ref|YP_006073219|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Dendrophysa russelii]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009582)

NADH dehydrogenase subunit 6 (mitochondrion) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 7.15e-79

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 177196  Cd Length: 173  Bit Score: 231.95  E-value: 7.15e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305   1 MTYTMCLFLVGLVMGVIAVASNPSPYFAALGLVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305  81 SWGSRSVVAYVVTYVVGVVMVSGLFWDKWYDMSWAPVDELGELSVLRGDSGGVALMYSGGGGMLVVGAWVLLLTLFVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 383931305 161 LTRGLSRGSLRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 7.15e-79

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 231.95  E-value: 7.15e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305   1 MTYTMCLFLVGLVMGVIAVASNPSPYFAALGLVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305  81 SWGSRSVVAYVVTYVVGVVMVSGLFWDKWYDMSWAPVDELGELSVLRGDSGGVALMYSGGGGMLVVGAWVLLLTLFVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 383931305 161 LTRGLSRGSLRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-147 3.38e-09

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 52.51  E-value: 3.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305   17 IAVASNPSPYFAALGLVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALAAEPYPESWGSRSVVAYVVTYVV 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 383931305   97 GVVMVSGLFWDKWYDMSWAPVDELGELSVlrgDSGGVALMYSGGGGMLVVG 147
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNI---EAIGELLFTDYLLPFELAS 128
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 7.15e-79

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 231.95  E-value: 7.15e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305   1 MTYTMCLFLVGLVMGVIAVASNPSPYFAALGLVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305  81 SWGSRSVVAYVVTYVVGVVMVSGLFWDKWYDMSWAPVDELGELSVLRGDSGGVALMYSGGGGMLVVGAWVLLLTLFVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 383931305 161 LTRGLSRGSLRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-173 1.44e-49

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 157.70  E-value: 1.44e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305   1 MTYTMCLFLVGLVMGVIAVASNPSPYFAALGLVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305  81 SWGSRSvVAYVVTYVVGVVMVSGLFWDKWYDMSWAPVDELGELSVLRGDSGGVALMYSGGGGMLVVGAWVLLLTLFVVLE 160
Cdd:MTH00065  81 AWGSWS-VLVYVLFYLLLLIVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLE 159

                        170
                 ....*....|...
gi 383931305 161 LTRGLSRGSLRAV 173
Cdd:MTH00065 160 VTRGLSRGSLRAV 172
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-173 1.91e-38

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 129.10  E-value: 1.91e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305   1 MTYTMCLFLVGLVMGVIAVASNPSPYFAALGLVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305  81 SWGSRSVVAYVVTYVVGVVMVSGLFWDKW-YDMSWAPVDELGELSVLRGDSGGVALMYSGGGGMLVVGAWVLLLTLFVVL 159
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLWgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 383931305 160 ELTRGLSRGSLRAV 173
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-149 1.36e-28

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 104.11  E-value: 1.36e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305   1 MTYTMCLFLVGLVMGVIAVASNPSPYFAALGLVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 383931305  81 SWGSRSVVAYVVTYVVGVVMVSGLFWDKWYDMSWA---------PVDELGELSVLRGDSGGVALMYSGGGGMLVVGAW 149
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDEVEVVfnfnglgdwVIYDTGGSGFFSEDAMGVAALYSYGTWLVVVTGW 159
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-173 1.67e-28

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 103.53  E-value: 1.67e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305   1 MTYTMCLFLVGLVMGVIAVASNPSPYFAALGLVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305  81 SWGSRSVVAYVVTYVVGVVMVSGLFWDKWYDMSWAPVDELGELSVlrgdsGGVALMYSGGGGMLVVGAWVLLLTLFVVLE 160
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVDEANNLDL-----SGVSDLYSRGFFLLLLGGVVLFLVLFVVLE 155

                        170
                 ....*....|...
gi 383931305 161 LTRGLSRGSLRAV 173
Cdd:MTH00214 156 LVRGLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 7-172 8.17e-16

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 70.70  E-value: 8.17e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305   7 LFLVGLVMGVIAVASNPSPYFAALGLVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALAAEPYPESwgsrS 86
Cdd:MTH00045   5 LFLILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSV----S 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305  87 VVAYVVTYVVGVVMVSGLFWDKWYDMSWAPVDELGELSVLrgdsgGVALMYSGGGGMLVVGAWVLLLTLFVVLELTRGLS 166
Cdd:MTH00045  81 NLGEVLVLSLLLSLWVFISFDNFLELSNNNWSLVSLSDLV-----GSSELYNSGGLYLLLGGFILLVALVVALVISFGHE 155


                 ....*.
gi 383931305 167 RGSLRA 172
Cdd:MTH00045 156 YSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-147 3.38e-09

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 52.51  E-value: 3.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383931305   17 IAVASNPSPYFAALGLVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALAAEPYPESWGSRSVVAYVVTYVV 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 383931305   97 GVVMVSGLFWDKWYDMSWAPVDELGELSVlrgDSGGVALMYSGGGGMLVVG 147
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNI---EAIGELLFTDYLLPFELAS 128
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-74 1.95e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 39.87  E-value: 1.95e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 383931305   1 MTYTMCLFLVGLVMGVIAVASNPSPYFAALglVVVAGLGCGVMVWYGGHFLALVLFLIYLGGMLVVFAYSAALA 74
Cdd:MTH00152   1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVL--LLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLS 72
ND6 MTH00015
NADH dehydrogenase subunit 6; Validated
 1-73 5.55e-03

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 164590  Cd Length: 155  Bit Score: 35.60  E-value: 5.55e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 383931305   1 MTYTMCLFLVG--LVMGViavasnpspYFAALGLVVVAGLGCGVMVWYgghflALVLFLIYLGGMLVVFAYSAAL 73
Cdd:MTH00015  11 ISLTCSLFLATtpITLGI---------NILMMALLLATTMASALSSWF-----AFLTFLIYVGGMLVMFAYFLAL 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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