|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
1-294 |
0e+00 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 517.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 1 MKPFLRWCFVATALTLAGCSS--TAWRKDAVLAVPLQPTLQQEVILARMEQILASRALSDDERAQLLYERGVLYDSLGLR 78
Cdd:PRK11189 1 MKPFLRWCFVATALLLAGCSSsnSSWRKNEVLAVPLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 79 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQ 158
Cdd:PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 159 DDPNDPFRSLWLYIAERKLDEKRALEALRERLNKSDKEQWGWNIVEFYLGDISEKELMTRLKADATDNTSLAEHLSETNF 238
Cdd:PRK11189 161 DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYF 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 378980867 239 YLGKYYLSLGDKDSATALFKLAVANNVHNYVEHRYALLELSLLGQEQDDLAESDQQ 294
Cdd:PRK11189 241 YLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQDQDDLAESDQQ 296
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
53-201 |
2.23e-47 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 158.15 E-value: 2.23e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 53 SRALSDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 132
Cdd:COG4785 64 DRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 378980867 133 HLNRGIALYYGGRAKLAQDDLLAFYQDDPNDPFRSLWLYIAERKLDEKRALEALrerlnksdKEQWGWN 201
Cdd:COG4785 144 YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALL--------LEDWATA 204
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
30-215 |
4.11e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.41 E-value: 4.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 30 LAVPLQPTLQQEVILARMEQILAS--RALSDD-ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL 106
Cdd:COG3914 77 LAALLELAALLLQALGRYEEALALyrRALALNpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 107 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQDDPNDP-FRSLWLYIAERKLDEKRALEA 185
Cdd:COG3914 157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAdAHSNLLFALRQACDWEVYDRF 236
|
170 180 190
....*....|....*....|....*....|
gi 378980867 186 LRERLNKSDKEQWGWNIVEFYLGDISEKEL 215
Cdd:COG3914 237 EELLAALARGPSELSPFALLYLPDDDPAEL 266
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
28-187 |
1.49e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 67.71 E-value: 1.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 28 AVLAVPLQPTLQQEVILARMEQILASRALSDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT 107
Cdd:COG3914 44 ALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 108 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQDDPNDPfrSLWLYIAERKLDEKRALEALR 187
Cdd:COG3914 124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNA--EALNNLGNALQDLGRLEEAIA 201
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
58-231 |
3.82e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.64 E-value: 3.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 58 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 137
Cdd:COG0457 72 DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 138 IALYYGGRAKLAQDDLLAFYQDDPNDPFRSLWLYIAERKLDEKRALEALRERLNKSDKEQWGWNIVEFYLGDISEKELMT 217
Cdd:COG0457 152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231
|
170
....*....|....
gi 378980867 218 RLKADATDNTSLAE 231
Cdd:COG0457 232 ALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
58-191 |
4.29e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.64 E-value: 4.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 58 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 137
Cdd:COG0457 38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 378980867 138 IALYYGGRAKLAQDDLLAFYQDDPNDPFRSLWLYIAERKL-DEKRALEALRERLN 191
Cdd:COG0457 118 LALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLgRYEEALELLEKLEA 172
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
58-187 |
9.56e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.49 E-value: 9.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 58 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 137
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 378980867 138 IALYYGGRAKLAQDDLLAFYQDDPNDPfrSLWLYIAERKLDEKRALEALR 187
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDA--EALYNLGLALLELGRYDEAIE 131
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
46-174 |
2.29e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.02 E-value: 2.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 46 RMEQILASRALSDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 125
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 378980867 126 DPTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQDDPND-PFRSLWLYIAE 174
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADaPARLLEASIAE 130
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
59-197 |
3.74e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.82 E-value: 3.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 59 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 138
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 378980867 139 ALYYGGRAKLAQDDLLAFYQDDPNDPFRSLWLYIAERKLDEKRALEALRERLNKSDKEQ 197
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
58-192 |
3.11e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 59.74 E-value: 3.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 58 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 137
Cdd:COG2956 140 GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 378980867 138 IALYYGGRAKLAQDDLLAFYQDDPNDPFRSLWLYIAERKLDEKRALEALRERLNK 192
Cdd:COG2956 220 ELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
55-193 |
9.18e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.33 E-value: 9.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 55 ALSDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 134
Cdd:TIGR02917 118 LLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL 197
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 378980867 135 NRGIALYYGGRAKLAQDDLLAFYQDDPNDP----FRSLWLyIAERKLDEKRA-LEALRERLNKS 193
Cdd:TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNNIavllALATIL-IEAGEFEEAEKhADALLKKAPNS 260
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
71-162 |
2.16e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.64 E-value: 2.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 71 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAyEAFDSVLELDPTYNYAHLNRGIALYYGGRAKLAQ 150
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 378980867 151 DDLLAFYQDDPN 162
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
44-258 |
1.34e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 54.74 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 44 LARMEQILASRALSDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 123
Cdd:COG2956 58 YDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 124 ELDPTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQDDPNDPfRSLWLY--IAERKLDEKRALEALRERLNKS-DKEQWGW 200
Cdd:COG2956 138 KLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA-RALLLLaeLYLEQGDYEEAIAALERALEQDpDYLPALP 216
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 378980867 201 NIVEFYLGDISEKELMTRLKADATDNTSLAEHLsetnfYLGKYYLSLGDKDSATALFK 258
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDLLL-----ALADLLERKEGLEAALALLE 269
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
23-161 |
1.71e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.66 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 23 AWRKDAVLAVPLQPTLQQEVILARMEQILASRALSDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 102
Cdd:COG5010 15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 378980867 103 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQDDP 161
Cdd:COG5010 95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
58-163 |
3.57e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.35 E-value: 3.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 58 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 137
Cdd:COG4783 34 DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLA 113
|
90 100
....*....|....*....|....*.
gi 378980867 138 IALYYGGRAKLAQDDLLAFYQDDPND 163
Cdd:COG4783 114 RAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
58-285 |
2.13e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.27 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 58 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 137
Cdd:COG2956 38 DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLA 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 138 IALYYGGRAKLAQDDLLAFYQDDPNDPFRSLWL-YIAERKLDEKRALEALRERLNKSDKEQWGW-NIVEFYL--GDISE- 212
Cdd:COG2956 118 EIYEQEGDWEKAIEVLERLLKLGPENAHAYCELaELYLEQGDYDEAIEALEKALKLDPDCARALlLLAELYLeqGDYEEa 197
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 378980867 213 KELMTRLKADATDNTSLAEHlsetnfyLGKYYLSLGDKDSATALFKLAVANNVHNYVEHRYALLELSLLGQEQ 285
Cdd:COG2956 198 IAALERALEQDPDYLPALPR-------LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEA 263
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
89-294 |
2.16e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.78 E-value: 2.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 89 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQDDPNDPFRSL 168
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 169 WLYIAERKLDE-KRALEALRERLNKSDKEQWGWN---IVEFYLGDISEkelmtrLKADATDNTSLAEHLSETNFYLGKYY 244
Cdd:COG0457 81 NLGLALQALGRyEEALEDYDKALELDPDDAEALYnlgLALLELGRYDE------AIEAYERALELDPDDADALYNLGIAL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 378980867 245 LSLGDKDSATALFKLAVANNVHNYVEHRYALLELSLLGQEQDDLAESDQQ 294
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALE 204
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
66-290 |
2.33e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.88 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 66 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 145
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 146 AKLAQDDLLAFYQDDPNDP-FRSLWLYIAERKLDEKRALEALRERLNKSDKEQWGWNI---VEFYLGDISE--KELMTRL 219
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAeALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCElaeLYLEQGDYDEaiEALEKAL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 378980867 220 KADATDntslaehlSETNFYLGKYYLSLGDKDSATALFKLAVANNvHNYVEHRYALLELSLLGQEQDDLAE 290
Cdd:COG2956 172 KLDPDC--------ARALLLLAELYLEQGDYEEAIAALERALEQD-PDYLPALPRLAELYEKLGDPEEALE 233
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
13-193 |
9.08e-05 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 42.71 E-value: 9.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 13 ALTLAGCSSTAWRKDAVLAVPLQPTLQQEVILA--RMEQ---ILASRAL-------SDDERAQLLyeRGVLYDSLGLRAL 80
Cdd:TIGR02521 6 LLALTGCVTTPDVPRSSRTTDRNKAAKIRVQLAlgYLEQgdlEVAKENLdkalehdPDDYLAYLA--LALYYQQLGELEK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 81 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLElDPTYNY---AHLNRGIALYYGGRAKLAQ------- 150
Cdd:TIGR02521 84 AEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQparSLENAGLCALKAGDFDKAEkyltral 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 151 --------------------------DDLLAFYQDDPNDPFRSLWLYI-AERKLDEKRALEALRERLNKS 193
Cdd:TIGR02521 163 qidpqrpesllelaelyylrgqykdaRAYLERYQQTYNQTAESLWLGIrIARALGDVAAAQRYGAQLQKL 232
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
44-193 |
2.35e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.71 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 44 LARMEQILASRALSDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 123
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 378980867 124 ELDPTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQDDPNDPFRSLWLYIAERKL-DEKRALEALRERLNKS 193
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLgQDDEAKAALQRALGTS 152
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
81-188 |
1.53e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 39.97 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 81 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQDD 160
Cdd:TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463
|
90 100
....*....|....*....|....*...
gi 378980867 161 PNDPfrSLWLYIAERKLDEKRALEALRE 188
Cdd:TIGR00990 464 PEAP--DVYNYYGELLLDQNKFDEAIEK 489
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
75-281 |
3.12e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 38.91 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 75 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRAKLAQDDLL 154
Cdd:TIGR02917 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378980867 155 AFYQDDPNDPFRSLWLYIAE-RKLDEKRALEALRERLNKSDKEQWGWNivefYLGDISEKElmtRLKADATDNTSLAEHL 233
Cdd:TIGR02917 422 TAAQLDPELGRADLLLILSYlRSGQFDKALAAAKKLEKKQPDNASLHN----LLGAIYLGK---GDLAKAREAFEKALSI 494
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 378980867 234 SETNF----YLGKYYLSLGDKDSATALFKLAVANNVHNYVEHRyALLELSLL 281
Cdd:TIGR02917 495 EPDFFpaaaNLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL-ALAGLYLR 545
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
69-141 |
3.43e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 38.81 E-value: 3.43e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 378980867 69 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTY-NYAHL-NRGIALY 141
Cdd:TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELeketKPMYmNVLPLiNKALALF 518
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
96-129 |
5.29e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 33.93 E-value: 5.29e-03
10 20 30
....*....|....*....|....*....|....
gi 378980867 96 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 129
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| |
