|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-321 |
8.88e-143 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 407.65 E-value: 8.88e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 1 MNPISLTILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWT 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 81 TGEWSVLNMSDTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTAPSlNTNILLSLGLL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 161 STLVGGWGGMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPKSPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 241 TTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYSMSLTTSPSPSNSYIPWYQSTK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
.
gi 334362172 321 Q 321
Cdd:MTH00135 320 Q 320
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-280 |
1.02e-19 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 87.75 E-value: 1.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 23 SYHWLLAWMGLEINTLAIIPLMA-QQHHPRAIEASTKYFLTQATASSMILFSSINNAWTTGEWSVLNMSDTTSITI---- 97
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 98 -------MTLALSIKIGLAPFHFWLPEVLQGLNLTTGLIL-STWQKLAPMAIM---YLTAPSLNT--NILLSLGLLSTLV 164
Cdd:pfam00361 81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsLLYLPSSPFiqQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 165 GGWGGMNQTQLRKILAFSSIAHLGWMISI----TSILPQLMALNLTIYLILTSSMFL-----TLKTLSSTTINTLSTAWP 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIAlgagTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 334362172 236 KSPMLTTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLAT 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVL 285
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
7-300 |
8.94e-14 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 72.07 E-value: 8.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 7 TILLFSLaLGTITTMSSYHWLLAWMGLEINTLAIIPLMA-QQHHPRAIEASTKYFLTQATASSMILF------------- 72
Cdd:COG1007 106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 73 -SSINNAWTTGEWSVLNMsdTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMA----IMYLTAP 147
Cdd:COG1007 185 lAGIAAALAAGGANSPLL--LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFP 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 148 SLNTNILLSLGLLST---LVGGWGGMNQTQLRKILAFSSIAHLGWM----ISITSILPQLMALNLTIYLILTSSMFLTLK 220
Cdd:COG1007 263 GLAADWQLLLAVLAVlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGTPLGVSAALFYLLAYLFMNLGAFAVIL 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 221 TLS-----STTINTLSTAWPKSPMLTTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLR 295
Cdd:COG1007 343 LLSrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
....*
gi 334362172 296 LSYSM 300
Cdd:COG1007 423 VVKAM 427
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-307 |
1.01e-12 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 68.82 E-value: 1.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 7 TILLFSLaLGTITTMSSYHWLLAWMGLEINTLAIIPLMA-QQHHPRAIEASTKYFLTQATASSMILFS---------SIN 76
Cdd:TIGR01770 106 ILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGisliygftgSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 77 NAWTTGEWSVLNMSDT---TSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIM-------YLTA 146
Cdd:TIGR01770 185 FEDLLLFLSNGMLNISlllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 147 PSLNTNILLSLGLLSTLVGGWGGMNQTQLRKILAFSSIAHLGW-MISITSILPQLMA---LNLTIYLILTSSMFLTLKTL 222
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 223 SST------TINTLSTAWPKSPMLTTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRL 296
Cdd:TIGR01770 345 RSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
330
....*....|.
gi 334362172 297 SYSMSLTTSPS 307
Cdd:TIGR01770 425 VKVMYFDKPER 435
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-321 |
8.88e-143 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 407.65 E-value: 8.88e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 1 MNPISLTILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWT 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 81 TGEWSVLNMSDTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTAPSlNTNILLSLGLL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 161 STLVGGWGGMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPKSPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 241 TTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYSMSLTTSPSPSNSYIPWYQSTK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
.
gi 334362172 321 Q 321
Cdd:MTH00135 320 Q 320
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-320 |
2.59e-135 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 388.90 E-value: 2.59e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 1 MNPISLTILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWT 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 81 TGEWSVLNMSDTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTAPSLNTNILLSLGLL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 161 STLVGGWGGMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPKSPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 241 TTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYSMSLTTSPSPSNSYIPWYQSTK 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-321 |
2.47e-118 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 345.65 E-value: 2.47e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 1 MNPISLTILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWT 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 81 TGEWSVLNMSDTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTAPSLNTNILLSLGLL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 161 STLVGGWGGMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPKSPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 241 TTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYSMSLTTSPSPSNSYIPWYQSTK 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
.
gi 334362172 321 Q 321
Cdd:MTH00112 321 K 321
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-321 |
2.75e-113 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 332.58 E-value: 2.75e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 1 MNPISLTILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWT 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 81 TGEWSVLNMSDTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTAPSLNTNILLSLGLL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 161 STLVGGWGGMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPKSPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 241 TTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYSMSLTTSPSPSNSYIPW-YQST 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWqFENT 320
|
..
gi 334362172 320 KQ 321
Cdd:MTH00105 321 KP 322
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-315 |
3.08e-92 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 279.16 E-value: 3.08e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 1 MNPISLTILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWT 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 81 TGEWSVLNMSDTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTAPSLNTNILLSLGLL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 161 STLVGGWGGMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPKSPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334362172 241 TTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYSMSLTTSPSPSNSYIPW 315
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSW 315
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-319 |
1.36e-75 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 236.75 E-value: 1.36e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 1 MNPISLTILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWT 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 81 TGEWSVLNMSDTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTAPSLNTNILLSLGLL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 161 STLVGGWGGMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPKSPML 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334362172 241 TTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYSMSLTTSPSPSNSYIPWYQST 319
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSG 319
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-313 |
1.85e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 171.16 E-value: 1.85e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 1 MNPISLTILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAwt 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 81 tgewSVLNMSDTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTapsLNTNILLSLGLL 160
Cdd:MTH00160 80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 161 STLVGGWGGMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPKSPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334362172 241 TTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYSMSLTTSPSPSNSYI 313
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK 305
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
10-305 |
3.53e-42 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 149.27 E-value: 3.53e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 10 LFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWTTGEWSVLNM 89
Cdd:MTH00144 10 LFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSMSL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 90 sdttsitiMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTAPSLNT-NILLSLGLLSTLVGGWG 168
Cdd:MTH00144 90 --------LLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 169 GMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPkSPMLTTMCTLTL 248
Cdd:MTH00144 162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKP-SYKTGLSIISLL 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 334362172 249 LSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYSMSLTTS 305
Cdd:MTH00144 241 LSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSS 297
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
7-320 |
1.64e-39 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 142.23 E-value: 1.64e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 7 TILLFS--LALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSinnawtTGEW 84
Cdd:MTH00011 7 TMFLFSstMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 85 SVLNMSDTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTAPSLNTNILLSLGLLSTLV 164
Cdd:MTH00011 81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 165 GGWGGMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPKSPMLTTMC 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334362172 245 TLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYSMSLTTSPSPSNSYIPWYQSTK 320
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTK 316
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-299 |
7.95e-33 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 124.40 E-value: 7.95e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 8 ILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWTtgewsvl 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 88 NMSDTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAImyLTAPSLNTNILLSLGLLSTLVGGW 167
Cdd:MTH00197 75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLI--LAFNSSSFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 168 GGMNQTQLRKILAFSSIAHLGWMISITSILPQLMALNLTIYLILTSSMFLTLKTLSSTTINTLSTAWPKSPMLTTMCTLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 334362172 248 LLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRLSYS 299
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK 284
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-280 |
1.02e-19 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 87.75 E-value: 1.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 23 SYHWLLAWMGLEINTLAIIPLMA-QQHHPRAIEASTKYFLTQATASSMILFSSINNAWTTGEWSVLNMSDTTSITI---- 97
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 98 -------MTLALSIKIGLAPFHFWLPEVLQGLNLTTGLIL-STWQKLAPMAIM---YLTAPSLNT--NILLSLGLLSTLV 164
Cdd:pfam00361 81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsLLYLPSSPFiqQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 165 GGWGGMNQTQLRKILAFSSIAHLGWMISI----TSILPQLMALNLTIYLILTSSMFL-----TLKTLSSTTINTLSTAWP 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIAlgagTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 334362172 236 KSPMLTTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLAT 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVL 285
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-296 |
1.06e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 85.85 E-value: 1.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 13 LALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHP-RAIEASTKYFLTQATASSMILFSSINNAWTTGEWSV----- 86
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 87 -----LNMSDTT---SITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAImyLTAPSLNTNILLSLG 158
Cdd:MTH00196 82 vlnsgQSFSSVSvpiGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSI--LVSIGLNVNILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 159 LLSTLVGGWGGMNQTQLRKILAFSSIAHLGWMI------SITSILPQLMALNLTIYL-ILTSSMFLTLKTLSSTTINtLS 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLwgieigSFESIQASLVYLFIYIIMsICVFSIILALNVYKNLIIE-FS 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334362172 232 TAWPKSPMLTTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRL 296
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
5-267 |
6.48e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 84.30 E-value: 6.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 5 SLTILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMA-QQHHPRAIEASTKYFLTQATASSMILFSSINNAWTTGE 83
Cdd:MTH00199 98 SSPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 84 WSVLNMSDTTSITI----MTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIMYLTAPSlnTNILLSLGL 159
Cdd:MTH00199 178 TSIQGINSILTGDVgkilITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPV--TNVVLICAV 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 160 LSTLVGGWGGMNQTQLRKILAFSSIAHLGWMI------SITSILPQLMAlnLTIYLILTSSMFLTLKTLSSTT--INTLS 231
Cdd:MTH00199 256 LSIIYGAIGALNQTKIKRLLAYSGIGHMGFILfgvaigSFESIQASLIY--MIIYVIMSICSFSIILSLKLTKglIVEVS 333
|
250 260 270
....*....|....*....|....*....|....*.
gi 334362172 232 TAWPKSPMLTTMCTLTLLSLGGLPPLSGFMPKWLII 267
Cdd:MTH00199 334 GLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
7-300 |
8.94e-14 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 72.07 E-value: 8.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 7 TILLFSLaLGTITTMSSYHWLLAWMGLEINTLAIIPLMA-QQHHPRAIEASTKYFLTQATASSMILF------------- 72
Cdd:COG1007 106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 73 -SSINNAWTTGEWSVLNMsdTTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMA----IMYLTAP 147
Cdd:COG1007 185 lAGIAAALAAGGANSPLL--LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFP 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 148 SLNTNILLSLGLLST---LVGGWGGMNQTQLRKILAFSSIAHLGWM----ISITSILPQLMALNLTIYLILTSSMFLTLK 220
Cdd:COG1007 263 GLAADWQLLLAVLAVlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGTPLGVSAALFYLLAYLFMNLGAFAVIL 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 221 TLS-----STTINTLSTAWPKSPMLTTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLR 295
Cdd:COG1007 343 LLSrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
....*
gi 334362172 296 LSYSM 300
Cdd:COG1007 423 VVKAM 427
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-307 |
1.01e-12 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 68.82 E-value: 1.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 7 TILLFSLaLGTITTMSSYHWLLAWMGLEINTLAIIPLMA-QQHHPRAIEASTKYFLTQATASSMILFS---------SIN 76
Cdd:TIGR01770 106 ILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGisliygftgSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 77 NAWTTGEWSVLNMSDT---TSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIM-------YLTA 146
Cdd:TIGR01770 185 FEDLLLFLSNGMLNISlllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 147 PSLNTNILLSLGLLSTLVGGWGGMNQTQLRKILAFSSIAHLGW-MISITSILPQLMA---LNLTIYLILTSSMFLTLKTL 222
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 223 SST------TINTLSTAWPKSPMLTTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLRL 296
Cdd:TIGR01770 345 RSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
330
....*....|.
gi 334362172 297 SYSMSLTTSPS 307
Cdd:TIGR01770 425 VKVMYFDKPER 435
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
7-300 |
7.25e-12 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 66.00 E-value: 7.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 7 TILLFSLaLGTITTMSSYHWLLAWMGLEINTLAIIPLMA-QQHHPRAIEASTKYFLTQATASSMIL-------------- 71
Cdd:PRK05777 107 LLVLFAL-LGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgsls 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 72 FSSINNAWTTGEWSVLNMSdtTSITIMTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLAPMAIM----YLTAP 147
Cdd:PRK05777 186 FAGIAKALADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllVVAFG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 148 SLNT---NILLSLGLLSTLVGGWGGMNQTQLRKILAFSSIAHLGWM----ISITSILPQLMALNLTIYLILTSSMF---- 216
Cdd:PRK05777 264 GLSEdwqQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglAAGTAEGYSAVLFYLLAYLFMTLGAFgvis 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 217 -LTLKTLSSTTINTLSTAWPKSPMLTTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLATLMALSALLSLFFYLR 295
Cdd:PRK05777 344 lLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423
|
....*
gi 334362172 296 LSYSM 300
Cdd:PRK05777 424 VIKLM 428
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
3-191 |
3.69e-11 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 64.11 E-value: 3.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 3 PISLTILLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAI---------EASTKYFLTQATASSMILFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 74 SINNAWTTGEWSVLNMS-----DTTSITI---------MTLALSIKIGLAPFHFWLPEVLQGLNLTTGLILSTWQKLapM 139
Cdd:MTH00198 267 CALYFGFTGNEGMLGTIlsatlETTNIELrqgslgylfITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334362172 140 AIMYLTAPSLNTNILLSLGLLSTLVGGWGGMNQTQLRKILAFSSIAHLGWMI 191
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
30-279 |
1.76e-07 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 52.46 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 30 WMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWTTGewsVLNMSD-------------TTSIT 96
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATG---TLNMADlaarlaeldpgllLAAFA 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 97 IMTLALSIKIGLAPFHFWLPE-----------VLQGLNLTTGL--ILSTWQKLAPMAIMYLTAPslntnILLSLGLLSTL 163
Cdd:COG0651 210 LLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-----LLLVLGLLTML 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 164 VGGWGGMNQTQLRKILAFSSIAHLGWMISITSILPQLmALNLTIYLILTSSMF---------LTLKTLSSTTINTLSTAW 234
Cdd:COG0651 285 VGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPL-GLAGALFHLLNHALAkallflaagAIERATGTRDLDKLGGLG 363
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 334362172 235 PKSPMLTTMCTLTLLSLGGLPPLSGFMPKWLIIQELINQNTPMLA 279
Cdd:COG0651 364 KRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-191 |
7.78e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 44.48 E-value: 7.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 33 LEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWTTGewsVLNMSD-----------TTSITIMTLA 101
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTG---TLNMADlagalaenptvVTAFGFVLLA 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 102 LSIKIGLAPFHFWLPEVLQGL-NLTTGLILSTWQKLAPMAIM--YLTAPSLNT-------NILLSLGLLSTLVGGWGGMN 171
Cdd:PRK08375 212 LALKAAVFPLHTWLPRAYPAApPVVTALLSGLVTKVAVYALIriYFTVFGGDFrfalglgWLLAVLALLSMLVGSLAALG 291
|
170 180
....*....|....*....|
gi 334362172 172 QTQLRKILAFSSIAHLGWMI 191
Cdd:PRK08375 292 QDDVKRVLAYSTVSQMGYIL 311
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
50-191 |
3.56e-04 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 42.23 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 50 PRAIEASTKYFLTQATASSMILFSSINNAWTTG------EWSVLNMSDTTSITIMT---LALSIKIGLAPFHFWLPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLaffIAFAVKVPLFPLHTWLPDAhV 231
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334362172 120 QGLNLTTGLILSTWQKLAPMAIMYLTAPSL--NTNILLSLGLLSTLV----GGWGGMNQTQLRKILAFSSIAHLGWMI 191
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLPLFpdASLYFAPVLAALGVIaiiyGALIALAQTDIKRLIAYSSISHMGFVL 309
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
9-191 |
7.56e-04 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 41.28 E-value: 7.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 9 LLFSLALGTIT-TMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATA------SSMILFSSINNAWTT 81
Cdd:PRK08676 106 LGFNLLLSVITfAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGT 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 82 G--EWSVLNMSD--------TTSITIMTLALSIKIGLAPFHFWLPEV-LQGLNLTTGLILSTWQKLAPMAIMYLTA---- 146
Cdd:PRK08676 186 GtlNWTELAAHAsllspsvlGASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrq 265
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 334362172 147 ---PSLNTNILLSLGLLSTLVGGWGGMNQTQLRKILAFSSIAHLGWMI 191
Cdd:PRK08676 266 sgaAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLML 313
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
49-188 |
1.03e-03 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 40.83 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 49 HPRAIEASTKYFLTQATASSMILFSSINNAWTTGEWS-------VLNMSDTTSITIMT---LALSIKIGLAPFHFWLPE- 117
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaelaAAPLPLTAQLLLFLaffIAFAVKVPMFPFHTWLPDa 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 118 ----------VLQGLNLTTG----------LILSTWQKLAPMaIMYLTAPSLntnillslgllstLVGGWGGMNQTQLRK 177
Cdd:COG1008 236 hveaptagsvLLAGVLLKMGgygllrfalpLFPEASAYFAPL-LAALGVIGI-------------IYGALVALAQTDLKR 301
|
170
....*....|.
gi 334362172 178 ILAFSSIAHLG 188
Cdd:COG1008 302 LIAYSSVSHMG 312
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
100-222 |
1.54e-03 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 40.29 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 100 LALSIKIGLAPFHFWLPEV-----LQGLNLTTGLILstwqKLAPMAIMYLTAPSLNTNILLSLGLLSTL------VGGWG 168
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVRLSWPILPLGAQNLAPAVIAMgivgivYGSFA 313
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 334362172 169 GMNQTQLRKILAFSSIAHLGwMISITSILPQLMALNLTIYLIL----TSSMFLTLKTL 222
Cdd:MTH00226 314 TCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLahgiVSSLLFILVTI 370
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
9-266 |
2.36e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 39.70 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 9 LLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHH-PRAIEASTKYFLTQATASSMILFSSinnAWTTGEWSVL 87
Cdd:PRK08376 126 LILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTL 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 88 NMS--------DTTSITIMTLALSI-----KIGLAPFHFWLPEVLQGL--NLTTGLILSTWQKLAPMA--IMYLTAPSLN 150
Cdd:PRK08376 203 NMAylavkmseNPTVVAKIALALFIaglamKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLYALArvLFSIYGPAIN 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 151 TN----ILLSLGLLSTLVGGWGGMNQTQLRKILAFSSIAHLGWM-----ISITSILPQLM------ALNLTIYLILTSSM 215
Cdd:PRK08376 283 LAtvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllglgVGLAALGDPAMasygeiALAGGIYHIVNHAL 362
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 216 -----FLT----LKTLSSTTINTLSTAWPKSPMLTTMCTLTLLSLGGLPPLSGFMPKWLI 266
Cdd:PRK08376 363 ykallFLTagavIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
9-191 |
3.10e-03 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 39.30 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 9 LLFSLALGTITTMSSYHWLLAWMGLEINTLAIIPLMAQQHHPRAIEASTKYFLTQATASSMILFSSINNAWTTGEWSV-L 87
Cdd:PRK06473 112 LLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFdY 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334362172 88 NMSDTTSITIMT---------LALSIKIGLAPFHFWLPE-----------VLQG--LNLTTGLILSTWQKLAPMAIMYLt 145
Cdd:PRK06473 192 EPLRSHTLPLSTqllllapilVGFGIKIPLVPFHTWLPDahveastpvsvLLAGvlLKLGTYGLLRFGVGLFPEAWVYL- 270
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 334362172 146 APSLNTnillsLGLLSTLVGGWGGMNQTQLRKILAFSSIAHLGWMI 191
Cdd:PRK06473 271 APWLAT-----WAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYIL 311
|
|
| |
