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Conserved domains on  [gi|256427287|ref|YP_003127051|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Threskiornis aethiopicus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-346 3.74e-170

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 477.01  E-value: 3.74e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   1 MNPHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGQWDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPTLLTIMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYSTITLPPNSTNHMKQWHIDKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
                        330       340
                 ....*....|....*....|....*.
gi 256427287 321 TTISIAMFTSLSISLLPLSPMILTTI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-346 3.74e-170

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 477.01  E-value: 3.74e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   1 MNPHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGQWDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPTLLTIMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYSTITLPPNSTNHMKQWHIDKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
                        330       340
                 ....*....|....*....|....*.
gi 256427287 321 TTISIAMFTSLSISLLPLSPMILTTI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
9-299 4.79e-40

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 146.80  E-value: 4.79e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   9 FSLSL--VLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQAAASALVLF-SSMTNAwFTGQW 84
Cdd:COG1007  105 YALLLfaTLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSL 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  85 DITQL-----NHPTSSLLVTTAIAM-------KLGLVPFHFWFPEVLQGSSLTTALLLSTVMK----FPPITILFLTSHS 148
Cdd:COG1007  184 NLAGIaaalaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPG 263
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 149 LNP---TLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTL--MTFYL--YTLMTTTVFLTL-- 219
Cdd:COG1007  264 LAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVIll 343
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 220 ---HTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRL 296
Cdd:COG1007  344 lsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423

                 ...
gi 256427287 297 AYY 299
Cdd:COG1007  424 VKA 426
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
14-297 1.10e-29

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 118.13  E-value: 1.10e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   14 VLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQLNHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   93 TSS------------LLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMK---FPPITILFLTS----HSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  154 LTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTL--MTFYL--YTLMTTTVFLTLHTTK------ 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRsykdew 351
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 256427287  224 TLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-267 7.94e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 7.94e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   23 SNHWMMAWTGLEINTLAIIPLI-SKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQL--------NHPT 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   94 SS---LLVTTAIAMKLGLVPFHFWFPEVLQGSSLT-TALLLSTVMKFPPITILFLTS--HSLNPT---LLTIMAIASAAL 164
Cdd:pfam00361  81 LLllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  165 GGWMGLNQTQTRKILAFSSISHLGWM----AIVIIYNPKLTLMTFYLYTLMTTTVFL-----TLHTTKTLNLSTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMlialGAGTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
                         250       260       270
                  ....*....|....*....|....*....|..
gi 256427287  236 KTPMLNAALMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-346 3.74e-170

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 477.01  E-value: 3.74e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   1 MNPHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGQWDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPTLLTIMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYSTITLPPNSTNHMKQWHIDKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
                        330       340
                 ....*....|....*....|....*.
gi 256427287 321 TTISIAMFTSLSISLLPLSPMILTTI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
1-315 6.00e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 387.62  E-value: 6.00e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   1 MNPHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWF 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGQWDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSlNPTLLTIMAIA 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYSTITLPPNSTNHMKQW 315
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPW 314
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
1-329 5.92e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 382.73  E-value: 5.92e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   1 MNPHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWF 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGQWDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPTLLTIMAIA 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYSTITLPPNSTNHMKQWHIDKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                 ....*....
gi 256427287 321 TTISIAMFT 329
Cdd:MTH00070 321 TNNLLSLTI 329
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
1-325 1.25e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 341.06  E-value: 1.25e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   1 MNPHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWF 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGQWDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPTLLTIMAIA 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYSTITLPPnSTNHMK-QWHIDK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319

                 ....*.
gi 256427287 320 PTTISI 325
Cdd:MTH00105 320 TKPMTL 325
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
1-315 8.19e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 295.72  E-value: 8.19e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   1 MNPHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWF 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGQWDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPTLLTIMAIA 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYSTITLPPNSTNHMKQW 315
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSW 315
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
1-325 2.01e-91

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 277.20  E-value: 2.01e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   1 MNPHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWF 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGQWDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPTLLTIMAIA 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPML 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYSTITLPPNSTNHMKQWHIDKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                 ....*
gi 256427287 321 TTISI 325
Cdd:MTH00041 321 ITVYG 325
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
1-329 3.67e-65

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 209.29  E-value: 3.67e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   1 MNPHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWF 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGqwditqLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILfltSHSLNPTLLTIMAIA 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAyYSTITLPPNSTNHMKQWHIDKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRIS-YSSLMLNYNKNKWNLKKKKNKF 311

                 ....*....
gi 256427287 321 TTISIAMFT 329
Cdd:MTH00160 312 SLILNFLSF 320
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
5-302 1.40e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 176.62  E-value: 1.40e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   5 AKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  85 DitqlnhptSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPI-TILFLTSHSLNPTLLTIMAIASAA 163
Cdd:MTH00144  85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSAL 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 164 LGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTlMTSWTKTPMLNAA 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLS 235
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 256427287 244 LMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYSTI 302
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
7-310 5.08e-50

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 169.96  E-value: 5.08e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   7 LVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSmtnawfTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  87 TQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPTLLTIMAIASAALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 167 WMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPMLNAALML 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 256427287 247 TLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAyYSTITLPPNSTN 310
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLI-FNFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
8-302 2.43e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 157.53  E-value: 2.43e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   8 VFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMtnawftgqwdIT 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS----------LS 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  88 QLNHPT---SSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHslNPTLLTIMAIASAAL 164
Cdd:MTH00197  72 FSNLYLsllSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLI 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 165 GGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTKTPMLNAAL 244
Cdd:MTH00197 150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 256427287 245 MLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYSTI 302
Cdd:MTH00197 230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
9-299 4.79e-40

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 146.80  E-value: 4.79e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   9 FSLSL--VLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQAAASALVLF-SSMTNAwFTGQW 84
Cdd:COG1007  105 YALLLfaTLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSL 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  85 DITQL-----NHPTSSLLVTTAIAM-------KLGLVPFHFWFPEVLQGSSLTTALLLSTVMK----FPPITILFLTSHS 148
Cdd:COG1007  184 NLAGIaaalaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPG 263
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 149 LNP---TLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTL--MTFYL--YTLMTTTVFLTL-- 219
Cdd:COG1007  264 LAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVIll 343
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 220 ---HTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRL 296
Cdd:COG1007  344 lsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423

                 ...
gi 256427287 297 AYY 299
Cdd:COG1007  424 VKA 426
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-299 1.65e-33

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 129.17  E-value: 1.65e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   8 VFSLSL--VLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQW 84
Cdd:PRK05777 105 FYLLVLfaLLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSL 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  85 DITQL-----NHPTSSLLVTTAIAM-------KLGLVPFHFWFPEVLQGSSLTTALLLSTVMK---FPPIT----ILFLT 145
Cdd:PRK05777 185 SFAGIakalaDGSGNSLLLLFGLVFllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrllvVAFGG 264
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 146 SHSLNPTLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTL--MTFYL--YTLMTTTVF--LTL 219
Cdd:PRK05777 265 LSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgvISL 344
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 220 HTTKTLNLSTLmTSWT----KTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLR 295
Cdd:PRK05777 345 LRRKGGEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423

                 ....
gi 256427287 296 LAYY 299
Cdd:PRK05777 424 VIKL 427
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
13-296 2.10e-32

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 123.99  E-value: 2.10e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  13 LVLGTTITISSNHWMMAWTGLEINTLAIIPLI-SKSHHPRAVEAAIKYFLVQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  79 WFTGQWDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFltSHSLNPTLLTIMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 159 IASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVI----IYNPKLTLMTFYLYTLMTTTVF---LTLHTTKTLnLSTLM 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 256427287 232 TSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRL 296
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
14-297 1.10e-29

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 118.13  E-value: 1.10e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   14 VLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQLNHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   93 TSS------------LLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMK---FPPITILFLTS----HSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  154 LTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTL--MTFYL--YTLMTTTVFLTLHTTK------ 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRsykdew 351
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 256427287  224 TLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
11-267 4.76e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 116.27  E-value: 4.76e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  11 LSLVLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQL 89
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGI 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  90 NHPTSS----LLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPTLltIMAIASAALG 165
Cdd:MTH00199 184 NSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVL--ICAVLSIIYG 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 166 GWMGLNQTQTRKILAFSSISHLGW----MAIVIIYNPKLTLMTFYLYTLMTTTVF---LTLHTTKTLNLSTLMTSwTKTP 238
Cdd:MTH00199 262 AIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNP 340
                        250       260
                 ....*....|....*....|....*....
gi 256427287 239 MLNAALMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLIL 369
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-267 7.94e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 7.94e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   23 SNHWMMAWTGLEINTLAIIPLI-SKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQL--------NHPT 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   94 SS---LLVTTAIAMKLGLVPFHFWFPEVLQGSSLT-TALLLSTVMKFPPITILFLTS--HSLNPT---LLTIMAIASAAL 164
Cdd:pfam00361  81 LLllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  165 GGWMGLNQTQTRKILAFSSISHLGWM----AIVIIYNPKLTLMTFYLYTLMTTTVFL-----TLHTTKTLNLSTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMlialGAGTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
                         250       260       270
                  ....*....|....*....|....*....|..
gi 256427287  236 KTPMLNAALMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
13-296 8.30e-25

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 104.07  E-value: 8.30e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  13 LVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQLNHP 92
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  93 TSSL----------LVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMK--------------FPPITILFLTshs 148
Cdd:COG0651  196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTkvgvyailrvltllFGADPALFLG--- 272
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 149 lnpTLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVI-IYNPKLTLMTFYLY---TLMTTTVFLT----LH 220
Cdd:COG0651  273 ---TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAGALFHLlnhALAKALLFLAagaiER 349
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 256427287 221 TTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRL 296
Cdd:COG0651  350 ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
3-296 2.15e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 95.31  E-value: 2.15e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   3 PHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAV---------EAAIKYFLVQAAASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  74 SMTNAWFTGQ--------------WDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFppI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 140 TILFLTSHSLNPTLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVI-------IYNPKLTLMTFYLYTLMT 212
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALAS 424
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 213 TTVFLTLHTTKTL------------------NLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQE 274
Cdd:MTH00198 425 FTVICTLEEFGTRtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIA 504
                        330       340
                 ....*....|....*....|....*....
gi 256427287 275 LTAAATVITMLSLLGL-------FFYLRL 296
Cdd:MTH00198 505 FSSSLSIYYLVALFAIictcisaFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
7-328 1.41e-19

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 89.29  E-value: 1.41e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   7 LVFSLSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHP-RAVEAAIKYFLVQAAASALVL--FSSM-------- 75
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLyglsggei 193
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  76 -TNAWFTGQWDITQLNHPTSSL---LVTTAIAMKLGLVPFHFWFPEVLQGS-----------SLTTALLLSTVMkfppIT 140
Cdd:CHL00049 194 eLQEIVNGLINTQMYNSPGISIaliFITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRI----FD 269
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 141 ILFLTSHSLNPTLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVII-------YNPKLTLMTFYLYTLMTT 213
Cdd:CHL00049 270 IPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFMNLGT 349
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 214 TVFLTLHT--TKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLF 291
Cdd:CHL00049 350 FACIVLFGlrTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIY 429
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 256427287 292 FYLRLAYYSTITLPPNSTNHMKQ---WHIDKPTTISIAMF 328
Cdd:CHL00049 430 YYLKIIKLLMTGRNQEITPYVRNyrrSPLRSNNSIELSMI 469
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 5.14e-17

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 81.64  E-value: 5.14e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  50 PRAVEAAIKYFLVQAAASALVLF-SSMTNAWFTGQwdiTQLNHPTSSL-------------LVTTAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALitspslglalalvFVIAGIAFKISAVPFHQWT 233
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 116 PEVLQGSSLTTALLLSTVMKFP--PITILFLTSHSLNPT-----LLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfALAIRLLVTAFPSFDeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 189 WMAIVIIYNPK--LTLMTFYL--YTLMT----TTVFLTLHTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGF 260
Cdd:PRK02504 314 FVMIGLVAGTEagYASMVFYLlaYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393

                 ...
gi 256427287 261 LPK 263
Cdd:PRK02504 394 FGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-287 1.26e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 77.83  E-value: 1.26e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  33 LEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQAAASALVLFS---------SMTNAWFTGQWDITQLNHPTSSL-LVTTA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 102 IAMKLGLVPFHFWFPEVLQG--SSLTTALLLSTVMKFPPIT-ILF-LTSHSLNPT----LLTIMAIASAALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALArVLFsIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 174 QTRKILAFSSISHLGWM------AIVIIYNPKLT----------LMTFYLYTLMTTTVFLT----LHTTKTLNLSTLMTS 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 256427287 234 WTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRE--LTKQELTAAATVITMLSL 287
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESsaLFNPILGVIAMIGSVLTL 445
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-299 9.42e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 71.83  E-value: 9.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  33 LEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFS-SMTNAwFTGQW---DITQLNHPTSSLLVTTAIAM---- 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLnmaDLAGALAENPTVVTAFGFVLlala 213
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 105 -KLGLVPFHFWFPEVLQG-SSLTTALLLSTVMKFPPITIL------FLTSHSLNPTLLTI-MAIASAAL--GGWMGLNQT 173
Cdd:PRK08375 214 lKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIriyftvFGGDFRFALGLGWLlAVLALLSMlvGSLAALGQD 293
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 174 QTRKILAFSSISHLGWMAIVIIYNPKLTLM--TFYL--YTLMTTTVFLTL----HTTKTLNLSTLMTSWTKTPMLNAALM 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAgaieVTYGTRRLSELSGLGRRMPLTAAAFA 373
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 256427287 246 LTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYY 299
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
38-292 2.93e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 67.41  E-value: 2.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  38 LAIIP---LISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQW--DITQL-NHPTSS-------LLVTTAIAM 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELaAAPLPLtaqlllfLAFFIAFAV 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 105 KLGLVPFHFWFPEVLQGSSLTTALLLSTVM---------KFPpITILFLTSHSLNPTLLtIMAIASAALGGWMGLNQTQT 175
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAPLLA-ALGVIGIIYGALVALAQTDL 299
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 176 RKILAFSSISHLGWMAIVI-IYNPK-LTLMTFYL--YTLMTTTVFLTL----HTTKTLNLSTLMTSWTKTPMLNAALMLT 247
Cdd:COG1008  300 KRLIAYSSVSHMGFVLLGIfALNPLgLQGAVLQMvsHGLITAALFLLVgvlyDRTHTRDIADLGGLAKRMPVLAALFLLA 379
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 256427287 248 LLSLAGLPPLTGFLPKWLIIRELTKqeltaAATVITMLSLLGLFF 292
Cdd:COG1008  380 ALASLGLPGTSGFVGEFLVLLGAFQ-----VNPWLAILAALGLIL 419
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
81-263 6.89e-11

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 63.40  E-value: 6.89e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGQWDITQL-NHPTSSLLVTTAIAM-------KLGLVPFHFWFPEVLQGSSLTTALLLSTVM---------KFPPItilF 143
Cdd:PRK12644 184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---F 260
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 144 LTSHSLNPTLLtIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVI-IYNPKLTL----MTFyLYTLMTTTVFLT 218
Cdd:PRK12644 261 ADVPVWRPTVL-VLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALaglaMLL-AHALFKAALFLV 338
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 256427287 219 L----HTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 339 VgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
48-301 6.62e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 60.17  E-value: 6.62e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  48 HHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQLNH----PTSSLLVTTAIAM-------KLGLVPFHFWFP 116
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptILSSPLLTLILLLlllgafgKSAQFPLHFWLP 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 117 EVLQGSSLTTALLLSTVM---------KFPPITilfltshSLNPTLLTIMAI---ASAALGGWMGLNQTQTRKILAFSSI 184
Cdd:COG1009  236 DAMEGPTPVSALLHAATMvkagvyllaRLSPLF-------ALSPVWLTVVAIigaITALFAALIALAQTDIKRVLAYSTV 308
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 185 SHLGWMAIVIiynpKLTLMTFYLYTLMTTTVFLTL---------HTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLP 255
Cdd:COG1009  309 SQLGYMFLAL----GVGAYVAALFHLLTHAFFKALlflgagsviHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIP 384
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 256427287 256 PLTGFLPKWLIIRELTkqELTAAATVITMLSLLGLFFylrLAYYST 301
Cdd:COG1009  385 PFAGFFSKEAILEAAL--EAGGLGPLLLAVALLGAFL---TAFYSF 425
PRK12650 PRK12650
DUF4040 family protein;
29-285 1.16e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 59.67  E-value: 1.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  29 AWtglEINTLAIIPLISKSHhPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQLNHPTS-----------SLL 97
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaekpglttvvAVL 213
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  98 VTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITIL--FLTSHSLNPT---LLTIMAIASAALGGWMGLNQ 172
Cdd:PRK12650 214 IAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLlrFSPVFHDVAVwnwLLIIVGMITALMGAVFAVQK 293
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 173 TQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYT----LMTTTVFLTL----HTTKTLNLSTLMTSWTKTPMLNAAL 244
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVSV 373
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 256427287 245 MLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITML 285
Cdd:PRK12650 374 TIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLV 414
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
50-292 1.33e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 59.18  E-value: 1.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   50 PRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQ-WDITQLNHPTSSLLVTT--------AIAMKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELLNLPLPFGVQTwlflaffiAFAVKVPLFPLHTWLPDAhV 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  120 QGSSLTTALLLSTVMKFPPITI------LFLTSHSLNPTLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIV 193
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  194 IIYNPKLTLM--TFYLYT--LMTTTVFLTLHT----TKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWL 265
Cdd:TIGR01972 312 IFSFNELGISgaVFQMIShgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391
                         250       260
                  ....*....|....*....|....*..
gi 256427287  266 IIRELTKqeltaAATVITMLSLLGLFF 292
Cdd:TIGR01972 392 ILLGSFK-----VNPVVAFLAALGIVL 413
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-271 3.34e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 58.04  E-value: 3.34e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  33 LEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQLNH--PTSSLLVTTAIAMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 111 FHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPT--LLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 189 WMAIVIIYNPKLTLMtfylYTLMTTTVFLTLHTTKTLNLstlmTSWTKTPMLNA---ALMLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK07234 283 FILAAPLVGGLYALA----HGLVKSTLFLCAGALPSRNF----TELISQMLGIGkwiPLTMASFSIAGFPLLAGFVSKVL 354

                 ....*.
gi 256427287 266 IIRELT 271
Cdd:PRK07234 355 TLKNLL 360
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
2-298 6.66e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 57.31  E-value: 6.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   2 NPHAKLVFSLSLVLGTTITISSNHWMMAWTGLEINTLA---IIPLISKshhpRAVEAAIKYFLVQAAASALVLFSSMTNA 78
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIY 171
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  79 WFTGQWDIT-------QLNHPTSSLLVTTAIA----MKLGLVPFHFWFPE-----------VLQGS-SLTTALLLSTVMK 135
Cdd:PRK08668 172 AKTGTFDFAdisqgliNDTSTGFALIVFLFLLafgvAKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLY 251
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 136 FPPITILFLT-----SHSLNPTLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLT----LMTFY 206
Cdd:PRK08668 252 VLPGTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVF 331
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 207 LYTLMTTTVFLT----LHTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVI 282
Cdd:PRK08668 332 NHALFKGLFFLIfaavIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
                        330
                 ....*....|....*.
gi 256427287 283 TMLSLLGLFFYLRLAY 298
Cdd:PRK08668 412 FFGSIGSFLYVFRPLA 427
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
109-289 8.17e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 56.85  E-value: 8.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 109 VPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPT-----LLTIMAIASAALGGWMGLNQTQTRKILAFSS 183
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 184 ISHLGWMAIVIIYNPKLTLMTFYLY----TLMTTTVFLTL----HTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLP 255
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAgiidHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLP 371
                        170       180       190
                 ....*....|....*....|....*....|....
gi 256427287 256 PLTGFLPKWLIIRELTKQELtaAATVITMLSLLG 289
Cdd:PRK12647 372 PLFGFLAKELIYEALLEAPL--WSLILTVAAVLG 403
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-293 1.18e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.03  E-value: 1.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  92 PTSSLLVTTAIAMKLGLVPFhFWFPEVLQGSSLTTALLLSTVMK-------FPPITILFLTSHSLNPTLLTIMAIASAAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 165 GGWMGLNQTQTRKILAFSSISHLGWM-AIVIIYNPK-LTLMTFYLYTLMT--TTVFLTLHTTKTL----NLSTLMTSWTK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 256427287 237 TPMLNAALMLTLLSLAGLPPLTGFLPKWLIIR-ELTKQELTAAATV-----ITMLSLLGLFFY 293
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALMlitslITMYSLFRIFFL 428
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-329 1.76e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 52.73  E-value: 1.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  34 EINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQ-----LNHPTS------SLLVTTAI 102
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSpviyggLLLLIFGL 209
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 103 AMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITI------LFLTSHSLNPTLLTIMAIASAA--LGGWMGLNQTQ 174
Cdd:PRK06277 210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifkLFGGLSYFPSAQGVLIALSVLAmvFGVVMALLQTD 289
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 175 TRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYT----LMTTTVFLTLHT----TKTLNLSTLMTSWTKTPMLNAALML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIvsyrTKTSNLRKLGGLLPVMPVVAFMVLC 369
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 247 TLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSlLGLFFYLRLAYYSTITLPPNSTNHMKQWHIDKPTTISIA 326
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVS-IGTFVSMMKAFYLIYLKPKPEELEYKNKKVPKYAVFSLA 448

                 ...
gi 256427287 327 MFT 329
Cdd:PRK06277 449 VLT 451
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
20-267 2.27e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 52.24  E-value: 2.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  20 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSS----------MTNAWFTGQW-DITQ 88
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtELLK 203
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  89 LNHPTSSLLVTTAIAM-------KLGLVPFHFWFPE-----------VLQGSSLTTALLLstVMKFPPITILFLTSHSLN 150
Cdd:PRK06458 204 HASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYA--VLRYYILIDAAIGSDFPG 281
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 151 PtLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLM----TTTVFLT----LHTT 222
Cdd:PRK06458 282 R-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltKSAIFFAsgnvLQKY 360
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 256427287 223 KTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK06458 361 GTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
96-266 8.17e-07

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 50.60  E-value: 8.17e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  96 LLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTV-MKFPPITILFLTSHSLNPTL-----LTIMAIASAALGGWMG 169
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 170 LNQTQTRKILAFSSISHLGWMAI--------VIIYNPKLTLMTFY--LY-----TLMTTTVFL----TLHTTKTLNLSTL 230
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGIILLglgagvtgIALEQPALIALGLVggLYhllnhSLFKSVLFLgagsVWFRTGHRDIEKL 343
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 256427287 231 MTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVI 379
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
13-295 1.20e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.14  E-value: 1.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  13 LVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAA------SALVLFSSMTNAWFTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  87 TQLNHPT----------SSLLVTTAIAMKLGLVPFHFWFPEV-LQGSSLTTALLLSTVMKFPPITILFLTS-------HS 148
Cdd:PRK08676 191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 149 LNPTLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTL--MTFYL--YTLMTTTVFLT---LHT 221
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALfwMLFHMlaHSLVKSGLFFSagiLHR 350
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 256427287 222 TKTLNLSTLMTSWTK-TPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLG---LFFYLR 295
Cdd:PRK08676 351 QYRSDRFDRIFDVFRlQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAAssfAIFLLK 428
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-296 1.62e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 49.73  E-value: 1.62e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  33 LEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFS-----SMTNAWFTGQWDITQLNHPTSS------LLVTTA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMGDMFLIIQDLPTNRaiqigvLFIMVG 218
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 102 IAMKLGLVPFHFWFPEVLQGSSLTTALLLS----TVMKFPPITI--------LFLTSHSLNpTLLTIMAIASAALGGWMG 169
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIvydvfkanFVFTTLPFN-NVFMILAALAIVFGSVLA 297
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 170 LNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLY----TLMTTTVFLTL----HTTKTLNLSTLMTSWTKTPMLN 241
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSgsisYHFGTTKLEDCLNLWKSMPKIT 377
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 256427287 242 AALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRL 296
Cdd:PRK12662 378 LAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
33-267 2.90e-06

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 48.82  E-value: 2.90e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  33 LEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAAS------ALVLFSSMTNAWFTGqwdITQLNHPTSS---LLVTTAIA 103
Cdd:PRK06525 142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSA---LSGLHGSLKYlvfLGILFAAW 218
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 104 MKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNP------TLLTIMAIASAALGGWMGLNQTQTRK 177
Cdd:PRK06525 219 GKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKR 298
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 178 ILAFSSISHLGWMAIVI---IYNPKLTLM--TFYLYT--LMTTTVFLTL----HTTKTLNLSTLMTSWTKTPMLNAALML 246
Cdd:PRK06525 299 LLAYSTITQLGYMFFGLslaILGSRLALEgsIAYIFNhaFAKSLFFLVAgalsYSCGTRLLPRLRGVLKKLPLVGVGFCV 378
                        250       260
                 ....*....|....*....|.
gi 256427287 247 TLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK06525 379 AALAITGVPPFNGFFSKFPIF 399
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
86-296 3.66e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 48.41  E-value: 3.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  86 ITQLNHPTSSLLVTTAI------AMKLGLVPFHFWFPE----------VLQGSSLTTALLLSTVMKFppiTILFLTSHSL 149
Cdd:PRK07691 197 IAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLPGsyyappiaiaALFGALLTKVGVYAIARTF---TLFFSHDTSF 273
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 150 NPTLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYT----LMTTTVFL----TLHT 221
Cdd:PRK07691 274 THYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLihdmIVKAALFLligiMIKI 353
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 256427287 222 TKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRL 296
Cdd:PRK07691 354 TGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12646 PRK12646
DUF4040 family protein;
86-272 1.15e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 47.06  E-value: 1.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  86 ITQLNHPTSSLLVTTAIAM-------KLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITILF-----LTSHSLNPTL 153
Cdd:PRK12646 197 LGQADHIKNHGLFIPMIFMfllgaftKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFrftplLGLSNMYIYI 276
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 154 LTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGW-MAIV-----IIYNPKLTLMTFY-------LYTLMTTTVF---- 216
Cdd:PRK12646 277 VTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMiMAMVgigggYAQHQQDAIASIYvfvlfaaLFHLMNHAIFkcal 356
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 256427287 217 -----LTLHTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTK 272
Cdd:PRK12646 357 fmgvgIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
96-288 1.55e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 46.50  E-value: 1.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  96 LLVTTAIAMKLGLVPFHFWFPEVL-QGSSLTTAL---LLSTVMKFPPI---TILFlTSHSLNpTLLTIMAIASAALGGWM 168
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTAVfagLLTKVGVYAIIrthTLLF-PGGGLD-TLLMVVALLTMVVGILG 290
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 169 GLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYT----LMTTTVFLTL----HTTKTLNLSTLMTSWTKTPML 240
Cdd:PRK12665 291 AIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVglieRQAGSSSLRRLGGLAKASPLL 370
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQ------ELTAAATVITMLSLL 288
Cdd:PRK12665 371 AVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDgtwlawALVAGGVVTSLLTLY 424
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-268 1.79e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 46.23  E-value: 1.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  38 LAIIPL---ISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTG--QWDITQLNHPT----SSLLVTTAI----AM 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLRSHTlplsTQLLLLAPIlvgfGI 217
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 105 KLGLVPFHFWFPEV-LQGSSLTTALLLSTVMKFPPITIL------FLTSHSLNPTLLTIMAIASAALGGWMGLNQTQTRK 177
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 178 ILAFSSISHLGWMAIVIIYNPKLTL----MTFYLYTLMTTTVFLTLHT------TKTLN-LSTLMTSWTKTPMLNAALML 246
Cdd:PRK06473 298 MVAYSSIGHMGYILLAAAAATPLSIlaavFQMISHGLISALLFLLVGVvykktgSRDVDvLRGLLNPERGLPITGSLMIL 377
                        250       260
                 ....*....|....*....|..
gi 256427287 247 TLLSLAGLPPLTGFLPKWLIIR 268
Cdd:PRK06473 378 GVMASAGIPGMVGFIAEFLVFR 399
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
48-263 1.85e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 46.36  E-value: 1.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  48 HHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQLNHPTSSL--------------LVTTAIAMKLGLVPFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplflitliLIFIGAAAKSAQGPFYI 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 114 WFPEVLQGSSLTTALLLSTVMKFPPITILFLTSHSLNPT-----LLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 189 WMAIVIIYNPK------LTLMTFYLYTLMTTTVFLTL------HTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPP 256
Cdd:PRK12649 316 YLMTMYGYTTYhepglgVAAATFHLLNHATFKACLFLvagivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395

                 ....*..
gi 256427287 257 LTGFLPK 263
Cdd:PRK12649 396 LNGFLSK 402
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
14-270 2.42e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 45.94  E-value: 2.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  14 VLGTTITISSNHWMM---AWTGLEINTLAIIPLISKSHHPRAVEAAIKYFlvqaaASALVLFSSMTNAWFTGQWDITQLN 90
Cdd:PRK06459  82 ILGMAIVLTSDNYLLflaGWEIMTIPSYVAIALTKKNKRPAFVFMAFGEL-----STVLILAGFAWAFIISGTTNFSYLP 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  91 HPTSSLLVTTAIAMKLGLVPFHF--WFPEVLQGSSLTTALLLSTVMK----FPPITILFLTSHS-LNPTLLTIMAIA--S 161
Cdd:PRK06459 157 SPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTlmgvYGILKMTILTQTIpIGYFGLTILAIGafS 236
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 162 AALGGWMGLNQTQTRKILAFSSISHLGWM-----AIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTTKTLNLSTLMTSWTK 236
Cdd:PRK06459 237 ILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSFAHSVAKTGLFLSSGLQEKQSI 316
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 256427287 237 TPMLNA-------ALMLTLLSLAGLPPLTGFLPKWLIIREL 270
Cdd:PRK06459 317 TYSKKIrnrwielGLTLLASSLSGLLPNIGGVASWLLLESL 357
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
55-291 5.05e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 45.11  E-value: 5.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  55 AAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQLNHPTSS-----LLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALL 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 130 LSTVMKFPPI--TILFLTShSLNP-----TLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLG--------WMAIVI 194
Cdd:PRK08667 243 MSGVMLKVAVygLVRFLMD-VLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGV 321
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 195 IYNPKLTLMTF-------YLYTLMTTTVFLT----LHTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK08667 322 YGLDTLALLALggalfhsLNHALFKSLLFLTagsvVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASE 401
                        250       260
                 ....*....|....*....|....*....
gi 256427287 264 WLIIRELTKQ-ELTAAATVITMLSLLGLF 291
Cdd:PRK08667 402 LLLYESFFQSfSVADPLIKILLFSVLAIF 430
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-266 5.75e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 44.70  E-value: 5.75e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  55 AAIKYFLVQAAASALVLFSSMTNAWFTGQWD------ITQLNHPTSSLLVTTAI----AMKLGLVPFHFWFPEVLQGSSL 124
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAYTEASP 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 125 TTALLLSTVMK--------------FPPitilflTSHSLNPTLLTIMAIaSAALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK07363 238 AVAILLGGVLAklgtygllrfglqlFPQ------TWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYI 310
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 191 AIVIIYNPKLTL---------------MTFYLYTLMTTTVfltlhTTKTLN-LSTLMTSWTKTPMLNAALMLTLLSLAGL 254
Cdd:PRK07363 311 LVAAAAGTQLSLlgavaqmishglilaLLFHLVGIVERKV-----GTRDLDvLNGLMNPIRGLPLTSALLVLAGMASAGI 385
                        250
                 ....*....|..
gi 256427287 255 PPLTGFLPKWLI 266
Cdd:PRK07363 386 PGLVGFVAEFIV 397
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
111-271 1.18e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.79  E-value: 1.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 111 FHFWFPEVLQGSSLTTALLLSTVMKFPPITIL-----FLTSHSLNPTLLTIMAIASAALGGWMGLNQTQTRKILAFSSIS 185
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 186 HLGWMAIVIIYNPKLTLMTFYL--YTLMTTTVFLT----LHTTKT--LNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPL 257
Cdd:MTH00032 324 QLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSagsvIHSTTVdeQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYL 403
                        170
                 ....*....|....
gi 256427287 258 TGFLPKWLIIrELT 271
Cdd:MTH00032 404 TGFYSKDLIL-ELT 416
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
50-267 1.50e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 43.27  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  50 PRAVEAAIKYFLVQAAASALVLFSSMTNAWF----TGQWDITQLNHPTSSLLVTT--------AIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 118 VLQ-----GSSLTTALLLST----VMKFPpITILFLTSHSLNPtLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMgaygLLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 189 W--MAIVIIYNPKLTLMTFYL--YTLMTTTVFLTL----HTTKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGF 260
Cdd:PRK05846 315 FvtLGIFAGNQLGIQGAIFQMisHGLSSAALFLLVgvlyDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGF 394

                 ....*..
gi 256427287 261 LPKWLII 267
Cdd:PRK05846 395 VGEFLIL 401
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
11-296 5.58e-04

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 41.68  E-value: 5.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  11 LSLVLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQLN 90
Cdd:PRK08377 115 LLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIA 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  91 HPTSSLLVTTAI----------AMKLGLVPFHFWFPEVLQGSSL-TTALLLSTVMK---FPPITILFLTSHSLNPT---- 152
Cdd:PRK08377 195 QLAGTIDPTVAQvglallifglAVEAELFPLNAWAPDAYQAAPHpITVMFSAFVVKaglYAMARILYLMQNANGWSsvlk 274
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 153 LLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLY--------TLMTTTVFLTLHTTKT 224
Cdd:PRK08377 275 LVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHminhaivkALLFLAVGYVGITLGG 354
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 256427287 225 LNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRL 296
Cdd:PRK08377 355 TEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRL 426
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
82-267 5.94e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 41.67  E-value: 5.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  82 GQWDITQLNHPTSSLLVTTAI---AM-KLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPPITIL-----FLTSHSLNPT 152
Cdd:MTH00207 165 GHWSITNMWQTDMNNYIALSImiaAMtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWFNP 244
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 153 LLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLG-WMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLHTT-----KTLN 226
Cdd:MTH00207 245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFVCAGSLihshhHSQD 324
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 256427287 227 LSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00207 325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLIL 365
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
9-289 2.25e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.80  E-value: 2.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   9 FSLSLVLGTTITISSNHWMMaWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVqAAASALVLF--------SSMTNAWF 80
Cdd:PRK06589 122 FNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFlpaviliyTKTGNLDF 199
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  81 TGQwDITQLNHPTSSLLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVM----KFPPITILFLTSHSLNPT---- 152
Cdd:PRK06589 200 VSG-GLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQrifa 278
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 153 ---LLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWMAIV--IIYNPKLTLMTFYLYT--LMTTTVFLTLHT---- 221
Cdd:PRK06589 279 efnWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSafILTPKALGAAILHLVShsFAKICLFYSMGSiysl 358
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 256427287 222 TKTLNLSTLMTSWTKTPMLNAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAAtVITMLSLLG 289
Cdd:PRK06589 359 KKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLS-IIVMLVVIA 425
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
21-300 2.95e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 39.38  E-value: 2.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  21 ISSNHWMMAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQ----LNHPTSSL 96
Cdd:PRK06591 132 IATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIGFLLSITGSLNMTDiaayLQEHTNSR 211
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  97 LVTTAIA-------MKLGLVPFHFWFPEVLQGSS---------LTTALLLSTVMKFPPITILFLTSHSLNPTLLTIMAIA 160
Cdd:PRK06591 212 IITIAIGffligaiLKTAFFPMHFWMMRAYNNTAsvilvylagISTIIGIYIIYKFTYIIIGYETIKTAITNFIRPIALA 291
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTLMTTTVFLTLhttktlnLSTLMTSWTKTPmL 240
Cdd:PRK06591 292 TLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFLLYVTENGIIILPSLLLADSINKIALFL-------IDAYNESYKREP-N 363
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 241 NAALMLTLLSLAGLPPLTGFLPKWLIIRELTKQELTAAATVITMLSLLGLFFYLRLAYYS 300
Cdd:PRK06591 364 KVLIIIAIICSCGLPISPLFFIKVNILELLLTQNLLLDFIIILLSSVGSLFYHYKMVLLL 423
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
101-267 4.23e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 4.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 101 AIAMKLGLVPFHFWFPEV-----LQGSSLTTALLLS------TVMKFPpitILFLTSHSLNPTLLTiMAIASAALGGWMG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglVRLSWP---ILPLGAQNLAPAVIA-MGIVGIVYGSFAT 314
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 170 LNQTQTRKILAFSSISHLGWMAIVIIYNPKLTLMTFYLYTL----------MTTTVFLTLHTTKTLNLSTLMTswTKTPM 239
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLahgivssllfILVTILYDRHHTRLIKYYRGLS--ITMPI 392
                        170       180
                 ....*....|....*....|....*...
gi 256427287 240 LNAALMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226 393 WGTIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
5-190 5.29e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.53  E-value: 5.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   5 AKLVFSLSLVlgtTITISSNHW---MMAW--TGLEINTLaiipLISKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAW 79
Cdd:PRK08168 104 RALAGVLAAV---HLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYL 176
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  80 FTGQWDITQL-----NHPTSS------LLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTV--------MKFPPit 140
Cdd:PRK08168 177 EVGSLSLSALwahlaAQGASPslqaaaLLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVvnlggfvlIRFAP-- 254
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 256427287 141 iLFLTSHSLNpTLLTIMAIASAALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK08168 255 -LLEQAPPAR-WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 7.65e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 38.08  E-value: 7.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287  52 AVEAAIKYFLVQAAASALVLFSSMTNAWFTGQWDITQLNHPTSSLLVTTAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287 116 PEVLQGSSLTTALLLSTVMKFPPItilFLTS-----HSLNPTLLTIMAIA---SAALGGWMGLNQTQTRKILAFSSISHL 187
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGV---FLVArmypvFEQFPAVMTVIAWTgaiTAFLGASIALTQNDIKKGLAYSTISQL 327

                 ...
gi 256427287 188 GWM 190
Cdd:PRK07376 328 GYM 330
ND2 MTH00059
NADH dehydrogenase subunit 2; Provisional
6-146 7.95e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177131  Cd Length: 289  Bit Score: 37.60  E-value: 7.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 256427287   6 KLVFSLSLVLGTTIT-ISSNHWMMAWTGLEINTLAIIPLI---SKSHHPRAVEAAIKYFLVQAAASALVLFSSMTNAWFT 81
Cdd:MTH00059   7 VVIFSLILSLFFCLLcLVSDSLLGFWVFLELCGLSLIPCFflsSNSNVLNFYSSLLSYIVMSGLSSSLLVSGLLFSDLYF 86
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 256427287  82 gqwditqlnhptsslLVTTAIAMKLGLVPFHFWFPEVLQGSSLTTALLLSTVMKFPpitILFLTS 146
Cdd:MTH00059  87 ---------------FIFFGFVVKFGLFPFMFWVYRVFSNSSWVVIWLISVVMKFP---VLFFCF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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