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NADH dehydrogenase subunit 7 (chloroplast) [Cicer arietinum]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 895.98
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 1 M N VP T TRKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M T VP A TRKDLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 161 GGV S ADLPYGWIDKC F DFC N YFLT R V I EYQKLITRNPIFLERVEGVGIIG R EE V INWGLSGPMLRASGIQWDLRKVD N YE 240
Cdd:CHL00017 161 GGV A ADLPYGWIDKC L DFC D YFLT G V A EYQKLITRNPIFLERVEGVGIIG G EE A INWGLSGPMLRASGIQWDLRKVD H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 241 CY E EFDWEVQWQKEGDSLARYLVRIGEM M ESIKIIQQALEGIPGGPYENLE I R S FDREK EP EWNDFEYRFI G KK S SPTFE 320
Cdd:CHL00017 241 CY D EFDWEVQWQKEGDSLARYLVRIGEM T ESIKIIQQALEGIPGGPYENLE A R R FDREK DS EWNDFEYRFI S KK P SPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 197294159 321 L P KQELYVRVEAPKGELGIFLIGD QNG FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGE I DR 393
Cdd:CHL00017 321 L S KQELYVRVEAPKGELGIFLIGD DSV FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGE V DR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 895.98
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 1 M N VP T TRKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M T VP A TRKDLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 161 GGV S ADLPYGWIDKC F DFC N YFLT R V I EYQKLITRNPIFLERVEGVGIIG R EE V INWGLSGPMLRASGIQWDLRKVD N YE 240
Cdd:CHL00017 161 GGV A ADLPYGWIDKC L DFC D YFLT G V A EYQKLITRNPIFLERVEGVGIIG G EE A INWGLSGPMLRASGIQWDLRKVD H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 241 CY E EFDWEVQWQKEGDSLARYLVRIGEM M ESIKIIQQALEGIPGGPYENLE I R S FDREK EP EWNDFEYRFI G KK S SPTFE 320
Cdd:CHL00017 241 CY D EFDWEVQWQKEGDSLARYLVRIGEM T ESIKIIQQALEGIPGGPYENLE A R R FDREK DS EWNDFEYRFI S KK P SPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 197294159 321 L P KQELYVRVEAPKGELGIFLIGD QNG FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGE I DR 393
Cdd:CHL00017 321 L S KQELYVRVEAPKGELGIFLIGD DSV FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGE V DR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 590.12
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 7 RKDL M IV NMGPQHPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V NGP 86
Cdd:COG0649 3 ETEE M VL NMGPQHPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HN F FRIGGV SA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HN Y FRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 167 LP Y G WID K CFD F CN YF LT R VI EY QK L I T R N P IF LE R VE GVG IIGR E EV I NW G LS GP M LRASG IQW DLRK VDN Y EC Y E E F D 246
Cdd:COG0649 163 LP D G FLE K VRE F LD YF PK R LD EY ED L L T G N R IF KA R TK GVG VLSA E DA I AL G VT GP V LRASG VDY DLRK DEP Y SG Y D E L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 247 WE V QWQK EGD SLA RYLVR IG EM ME S IK II Q Q A L EGI P G GP YENLEIRSFDRE KE PEWNDF E YRFIG - K KSSPT F EL P KQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP KE EMKTSM E ALIHH f K LVTEG F KV P AG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197294159 326 L Y VR VE A P K GELG IF L IG D QNGF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GE I DR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GE V DR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
3.55e-158
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 450.25
E-value: 3.55e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 9 DL MI V N M GPQHPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVNGP E Q 88
Cdd:TIGR01962 1 EF MI L N L GPQHPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHNF FRIGGV SA DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSAY FRIGGV AL DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 169 YG W IDKCFD F CNY F LT R VIE Y QK L ITR N P I FLE R VE GVG IIGREEVIN WGL S GPMLR A SGI Q WD L RK VDN YE C Y E E F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PK R LRD Y ET L LNE N R I WKQ R TQ GVG VVSAKDALD WGL T GPMLR G SGI D WD I RK SEP YE G Y D E Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 249 V QWQKE GD SLA RYL V R IG EM M ESIKII Q Q A LE GI P G GP Y -- E N LEIRSFDR E KEPEWN - DFEYR F ig K KSSPT F EL P KQ E 325
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I ka D N PKLAPPPK E RMLTSM e ALIHH F -- K LVTEG F RV P AG E 318
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197294159 326 L YV RV E A PKGELG IFL I G D QNGF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGE I DR 393
Cdd:TIGR01962 319 V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGE V DR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
6.69e-143
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 406.77
E-value: 6.69e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H NF FR I GGV SA DLP Y G WID K CFD F CN YF LT R VI EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H SY FR P GGV AR DLP E G FLE K IRE F LD YF PK R LD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 205 GVG IIGR E EVINW G LS GPMLRASG IQ WDLRK VDN Y EC Y E E F D WE V QWQK EGD SLA RYLVR IG EM ME S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VLSA E DALAL G VT GPMLRASG VP WDLRK DEP Y SG Y D E L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 285 GP Y -- ENLE I RSFDR E KEPE - WNDFEYR F ig K KSSPT F EL P KQ E L YV R VEAPKGELG IF L IG D QNGF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPK E EMKT s MEALIHH F -- K LVTEG F RV P AG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 197294159 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGE I DR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGE V DR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 895.98
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 1 M N VP T TRKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M T VP A TRKDLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 161 GGV S ADLPYGWIDKC F DFC N YFLT R V I EYQKLITRNPIFLERVEGVGIIG R EE V INWGLSGPMLRASGIQWDLRKVD N YE 240
Cdd:CHL00017 161 GGV A ADLPYGWIDKC L DFC D YFLT G V A EYQKLITRNPIFLERVEGVGIIG G EE A INWGLSGPMLRASGIQWDLRKVD H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 241 CY E EFDWEVQWQKEGDSLARYLVRIGEM M ESIKIIQQALEGIPGGPYENLE I R S FDREK EP EWNDFEYRFI G KK S SPTFE 320
Cdd:CHL00017 241 CY D EFDWEVQWQKEGDSLARYLVRIGEM T ESIKIIQQALEGIPGGPYENLE A R R FDREK DS EWNDFEYRFI S KK P SPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 197294159 321 L P KQELYVRVEAPKGELGIFLIGD QNG FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGE I DR 393
Cdd:CHL00017 321 L S KQELYVRVEAPKGELGIFLIGD DSV FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGE V DR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
6-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 727.30
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 6 TR KDL M IV N M GP Q HPSMHGVLRLIVTLDGEDV I DCEP IL GYLHRGMEKIAENRT IIQ Y L PYV T RWDY L A T MF T EAITVN G 85
Cdd:PRK07415 6 TR TEP M VL N F GP H HPSMHGVLRLIVTLDGEDV V DCEP VI GYLHRGMEKIAENRT NVM Y V PYV S RWDY A A G MF N EAITVN A 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 86 PE Q L G NI Q VPKRASYIRVIMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE L IYDL F EAATG M R MM - H N F FRIGGV S 164
Cdd:PRK07415 86 PE K L A NI P VPKRASYIRVIMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE M IYDL W EAATG Q R LI n N N Y FRIGGV A 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 165 ADLPYGW ID KC F DFC N YF LTRVI EY Q KLIT R NPIF LE R V EG V G I I G REE V INWGLSGPMLRASG IQ WDLRKVD N YECY EE 244
Cdd:PRK07415 166 ADLPYGW LE KC L DFC D YF GPKID EY E KLIT N NPIF RR R I EG L G T I S REE A INWGLSGPMLRASG VK WDLRKVD H YECY DD 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 245 FDW E V Q W QK EGD S LARY L VRI G EM M ES I KII Q QA LE GIPGGPYENLE IRSFDRE K EP EWN D F E Y RFIG KK SS PTF EL P KQ 324
Cdd:PRK07415 246 FDW D V A W ET EGD C LARY R VRI E EM R ES V KII R QA CK GIPGGPYENLE AKRMAEG K KS EWN G F D Y QYVA KK VA PTF KI P NG 325
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 197294159 325 ELYVR V E AP KGELGIF LI G DQNGF PWRWKIR PPG F I NLQILP Q L V K RM K L ADIM T ILGSID I IMG EI DR 393
Cdd:PRK07415 326 ELYVR L E SG KGELGIF IQ G NNDVT PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG SV DR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 590.12
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 7 RKDL M IV NMGPQHPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V NGP 86
Cdd:COG0649 3 ETEE M VL NMGPQHPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HN F FRIGGV SA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HN Y FRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 167 LP Y G WID K CFD F CN YF LT R VI EY QK L I T R N P IF LE R VE GVG IIGR E EV I NW G LS GP M LRASG IQW DLRK VDN Y EC Y E E F D 246
Cdd:COG0649 163 LP D G FLE K VRE F LD YF PK R LD EY ED L L T G N R IF KA R TK GVG VLSA E DA I AL G VT GP V LRASG VDY DLRK DEP Y SG Y D E L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 247 WE V QWQK EGD SLA RYLVR IG EM ME S IK II Q Q A L EGI P G GP YENLEIRSFDRE KE PEWNDF E YRFIG - K KSSPT F EL P KQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP KE EMKTSM E ALIHH f K LVTEG F KV P AG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197294159 326 L Y VR VE A P K GELG IF L IG D QNGF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GE I DR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GE V DR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
5-393
1.84e-175
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 494.29
E-value: 1.84e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 5 TTRKDLMIV N M GPQHP SM HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AE N RT II Q YL PY VT R W DY LAT M FT E AITVN 84
Cdd:PRK06075 1 EAEIRNYTL N F GPQHP AA HGVLRLI LE LDGE V V VRAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 85 GP E Q L GN I Q VP K RA S YIRV IM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE LIY DL F EA A TG M RM M H NFF R I GGV S 164
Cdd:PRK06075 81 AV E K L LG I E VP E RA Q YIRV LF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H AYI R P GGV R 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 165 A DLP Y G WIDKCF DF CN YF LT R VIE Y QK L I T R N P I FLE R VE GVG IIGR E EVINW G LS GPMLRASG IQ WDLRK VDN YE C Y E E 244
Cdd:PRK06075 161 R DLP D G LLEDIR DF LD YF PK R LDD Y ET L L T D N R I WKQ R LV GVG VVSK E RALAL G FT GPMLRASG VA WDLRK SQP YE V Y D E 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 245 F D WE V QWQ K E GD SLA RYLVR IG EM ME S IK II Q Q A L E -- GI P G GP Y -- ENLE I RSFD R EKEPEWND f EYRFIG K KSSPT F E 320
Cdd:PRK06075 241 L D FD V PVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L D rl RP P P GP V mv DDPK I APPA R LEMKTSME - ALIHHF K LVTEG F R 319
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 197294159 321 L P KQ E L Y VR VE A PKGE L G IF L IG D QNGF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT I L GS I DI IM GE I DR 393
Cdd:PRK06075 320 V P AG E V Y AA VE S PKGE F G VY L VS D GGNK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GE V DR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
5-393
1.22e-158
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 450.70
E-value: 1.22e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 5 TT R KDL M IV N M GPQHPS M HGV L RL IVTL DGE DVIDCE P IL GYLHRG M EK I AE NRTII Q YL PY VT R W DYL AT M FTEAITVN 84
Cdd:PRK12322 1 ML R TEE M LL N V GPQHPS T HGV F RL VLKI DGE IIVEAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 85 GP E QLGNIQ VP K RA S Y I RVI ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE L I YD L FEAAT G M R MMH N FF RIGGV S 164
Cdd:PRK12322 81 AV E TMMGLE VP E RA E Y L RVI AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE M I IN L LNELC G A R LTF N YM RIGGV K 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 165 A D L P Y GWI D K CFD F CN Y FLTRVIE Y QK L I T R N P IFL E RV E GVGI IGR EE V I NWG LSG PM LR AS G IQ WDLRK VDN Y EC Y EE 244
Cdd:PRK12322 161 W D A P D GWI E K VKE F VP Y MREQLAG Y HD L V T G N E IFL N RV K GVGI YSA EE A I SYS LSG VN LR CT G VN WDLRK DEP Y SI Y DR 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 245 FD WEVQWQKE GD SLA RY LV R IG E MME S I KII Q QA L E GI P - G GP yenleirsfdrekepewndfeyrf IGK K SSPTFEL PK 323
Cdd:PRK12322 241 FD FDIPVGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP ------------------------ VLA K VPKIIKA PK 296
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 324 Q E L YVR V E A P K GE L G IFLIG D QNGF P W R W K I R P P G F I NLQILP Q L V K RMKL A DIMT ILGSIDI IM GE I D R 393
Cdd:PRK12322 297 G E A YVR I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GE V D G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
3.55e-158
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 450.25
E-value: 3.55e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 9 DL MI V N M GPQHPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVNGP E Q 88
Cdd:TIGR01962 1 EF MI L N L GPQHPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHNF FRIGGV SA DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSAY FRIGGV AL DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 169 YG W IDKCFD F CNY F LT R VIE Y QK L ITR N P I FLE R VE GVG IIGREEVIN WGL S GPMLR A SGI Q WD L RK VDN YE C Y E E F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PK R LRD Y ET L LNE N R I WKQ R TQ GVG VVSAKDALD WGL T GPMLR G SGI D WD I RK SEP YE G Y D E Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 249 V QWQKE GD SLA RYL V R IG EM M ESIKII Q Q A LE GI P G GP Y -- E N LEIRSFDR E KEPEWN - DFEYR F ig K KSSPT F EL P KQ E 325
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I ka D N PKLAPPPK E RMLTSM e ALIHH F -- K LVTEG F RV P AG E 318
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197294159 326 L YV RV E A PKGELG IFL I G D QNGF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGE I DR 393
Cdd:TIGR01962 319 V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGE V DR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
6.69e-143
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 406.77
E-value: 6.69e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H NF FR I GGV SA DLP Y G WID K CFD F CN YF LT R VI EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H SY FR P GGV AR DLP E G FLE K IRE F LD YF PK R LD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 205 GVG IIGR E EVINW G LS GPMLRASG IQ WDLRK VDN Y EC Y E E F D WE V QWQK EGD SLA RYLVR IG EM ME S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VLSA E DALAL G VT GPMLRASG VP WDLRK DEP Y SG Y D E L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 285 GP Y -- ENLE I RSFDR E KEPE - WNDFEYR F ig K KSSPT F EL P KQ E L YV R VEAPKGELG IF L IG D QNGF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPK E EMKT s MEALIHH F -- K LVTEG F RV P AG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 197294159 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGE I DR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGE V DR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
8-393
3.74e-137
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 410.32
E-value: 3.74e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 8 KDLM I V N M GPQHP SM HG VL R LIVT LDGE DVI D CEPIL GY L HRG M EKI A E NRTII Q YL PY VT R W DYLA TMFTEAIT VN GP E 87
Cdd:PRK13292 402 EETL I L N L GPQHP GT HG II R FVLK LDGE EIV D MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 88 Q L GN I Q VP K RA S YIRV IML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE L I Y D LF E AA TG M RM MHNF FRIGGV SA DL 167
Cdd:PRK13292 482 T L CG I E VP D RA I YIRV MLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE K I F D IV E MI TG G RM HPAW FRIGGV AE DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 168 P Y GW IDKCFD F CNY F LT R VI EY QK L I T R NPIF LE R VE GVG I I G R E E VIN WG L SGP M LRA S G IQ WDLRK VDN Y EC Y EE FD W 247
Cdd:PRK13292 562 P E GW KEAVEA F LRW F PG R LK EY ED L L T G NPIF KA R LK GVG V I T R D E AVE WG I SGP N LRA C G LA WDLRK KMP Y GG Y DR FD F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 248 EV QWQKE GD SL ARYLVR IG EM ME S IK I IQ QA LE G I PGG PYENLEI R SFDRE K EPEWN D F E --- YR F IGKKSS P T fe L PK Q 324
Cdd:PRK13292 642 EV PTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY R YVLPQ K RDTLK D I E sli HH F VNVTRG P A -- P PK G 719
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 197294159 325 E L Y VRV EAPKGE L G I F LIG D QNGFPW R WK IR P P G F INL Q I LP Q L VKRMKL AD IMT I L GSID IIMGEI DR 393
Cdd:PRK13292 720 E C Y AAI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
9-393
2.28e-120
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 360.39
E-value: 2.28e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 9 D L M IV N M GP Q HPS M HG VL R LIVT LDGE DVI DC E P IL GY L HRG M EK IA E NRTIIQ Y L PY VT R W DYL ATMFT E AIT V NGP E Q 88
Cdd:PRK11742 190 D F M FL N L GP N HPS A HG AF R IVLQ LDGE EIV DC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPY V LAV E K 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 89 L GN I Q VP K R ASY IRV IML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R EL IYD LF EA A TG M RM MHNF FRIGGV SA DLP 168
Cdd:PRK11742 270 L AG I T VP D R VNV IRV MLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QK IYD VI EA I TG F RM HPAW FRIGGV AH DLP 349
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 169 Y GW IDKCFD F CNYFLT R VI EY Q K LIT RN P I FLE R VE GV GIIGRE E VIN WG LS G PM LRA S GI QW D L RK VDN Y EC YE E FD W E 248
Cdd:PRK11742 350 R GW DRLLRE F LDWMPK R LD EY E K AAL RN S I LKG R TQ GV AAYNAK E ALE WG VT G AG LRA T GI DF D V RK ARP Y SG YE N FD F E 429
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 249 V QWQKE GD SLA R YL V RIG EM ME S IK II Q Q A L EGI P G GP YENLEIRSFDRE KE PEWNDF E --- YR F IGKKSS P T fe L P KQ E 325
Cdd:PRK11742 430 V PVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP FKADHPLTTPPP KE RTLQHI E tli TH F LQVSWG P V -- M P AN E 507
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197294159 326 LYVRV EA P KG ELGIF L IG D QNGFPW R WK IR P P G F IN LQ IL P QLVKRMKLA D IMTI LGSID II M GEI DR 393
Cdd:PRK11742 508 SFQMI EA T KG INSYY L TS D GSTMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SDV DR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
8-385
4.05e-103
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 313.06
E-value: 4.05e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 8 KDLMIVNM GP Q H PSMHGVLRLIVTLD GE DVI D C E PI LGY L HRG M EK I AE N R TII Q Y L PYVT R ---------- WD Y latmf 77
Cdd:COG3261 120 EGVHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y ----- 194
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 78 TE A I tvngp E QLGN I Q VP K RA S Y I RVI M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE LIY DL F EA A TG M R MMHNF 157
Cdd:COG3261 195 CQ A V ----- E KAAG I E VP P RA Q Y L RVI L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGI 269
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 158 FRI GGV SA DL PYGWIDKCFDFCNYFLTR V I E YQK L ITRN P IF L E R VE G V G IIGR E EVINW G LS GP ML RASG IQW D L R KVD 237
Cdd:COG3261 270 NVP GGV RR DL DPEQLKAILERLDELEEE V K E LVD L FLND P SV L D R LV G T G VLSK E DARDL G AV GP VA RASG VDR D V R RDH 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197294159 238 N Y EC Y E E F D WE V QWQK EGD SL AR Y LVR IG E MM ES IKI I Q QALE GI P G GP YEN leirsfdrekepewndfeyrfigkks SP 317
Cdd:COG3261 350 P Y AA Y D E L D FK V VTET EGD VY AR A LVR LE E IF ES LDL I R QALE KL P E GP IRV -------------------------- PV 403
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197294159 318 TFEL P KQ E LYV RVEAP K GEL GIFLIG D QN G FPW R W KIR P P G F I N LQI L PQLVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 404 PGLP P DG E GLG RVEAP R GEL VHYVRT D GD G RLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
