NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|195933657|ref|YP_002117952|]
View 

NADH dehydrogenase subunit 3 (mitochondrion) [Ursus thibetanus thibetanus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 8.72e-63

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 186.68  E-value: 8.72e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   1 MNLILALFTNMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 195933657  81 TDNLMTMLIMALLLISLLAASLAYEWAEKGLEWAE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 8.72e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 186.68  E-value: 8.72e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   1 MNLILALFTNMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 195933657  81 TDNLMTMLIMALLLISLLAASLAYEWAEKGLEWAE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-84 5.44e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 87.48  E-value: 5.44e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 195933657   18 VLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTDNL 84
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFREL 65
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-113 4.03e-17

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 70.92  E-value: 4.03e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   3 LILALFTnMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTD 82
Cdd:COG0838    9 LIFLLVA-LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFR 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 195933657  83 NL-MTMLIMALLLISLLAASLAYEWAEKGLEW 113
Cdd:COG0838   86 ELgWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 8.72e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 186.68  E-value: 8.72e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   1 MNLILALFTNMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 195933657  81 TDNLMTMLIMALLLISLLAASLAYEWAEKGLEWAE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 1.83e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 137.74  E-value: 1.83e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   1 MNLILALFT-NMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00136   1 MNLITTILTiTIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 195933657  80 QTDNLMTMLIMALLLISLLAASLAYEWAEKGLEWAE 115
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 4.26e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 134.35  E-value: 4.26e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   3 LILALFTNMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTD 82
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 195933657  83 NLMTMLIMALLLISLLAASLAYEWAEKGLEWAE 115
Cdd:MTH00069  82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 3.94e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 124.22  E-value: 3.94e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   1 MNLILALFTNMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 195933657  81 TDNLMTMLIMALLLISLLAASLAYEWAEKGLEWA 114
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 5.77e-34

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 113.54  E-value: 5.77e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   1 MNLILALFTNMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 195933657  81 TDNLMTMLIMALLLISLLAASLAYEWAEKGLEWAE 115
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 3-113 1.70e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 99.59  E-value: 1.70e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   3 LILALFTNMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTD 82
Cdd:MTH00203   4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLS 83

                         90       100       110
                 ....*....|....*....|....*....|.
gi 195933657  83 NLMTMliMALLLISLLAASLAYEWAEKGLEW 113
Cdd:MTH00203  84 SLSLL--LAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-84 5.44e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 87.48  E-value: 5.44e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 195933657   18 VLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTDNL 84
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFREL 65
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 4.02e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 86.06  E-value: 4.02e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   1 MNLILALFTNMLLASLLVLIAFWLPQLNIYA-EKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDrEKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 195933657  80 QTDNLMTMLIMALLLISLLAASLAYEWAEKGLEWAE 115
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-113 3.09e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 83.67  E-value: 3.09e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   2 NLILALFTNMLLASLLVLIAFWLPQLNIYA-EKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDrEKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 195933657  81 TDNLMTMLIMALLLISLLAASLAYEWAEKGLEW 113
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-115 2.97e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 81.58  E-value: 2.97e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   1 MNLILALFTNMLLASLLVLIAFWL--PQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMlsFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 195933657  79 SQTDNLMTMLIMALLLISLLAASLAYEWAEKGLEWAE 115
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-114 3.34e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 76.44  E-value: 3.34e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   1 MNLILALFTNMLLASLLVLIAFWLPQLNIYA--EKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTAdrEKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 195933657  79 SQTDNLMTMLIMALLLISLLAASLAYEWAEKGLEWA 114
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-113 4.03e-17

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 70.92  E-value: 4.03e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   3 LILALFTnMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTD 82
Cdd:COG0838    9 LIFLLVA-LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFR 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 195933657  83 NL-MTMLIMALLLISLLAASLAYEWAEKGLEW 113
Cdd:COG0838   86 ELgWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-113 3.02e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 68.58  E-value: 3.02e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657  32 EKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTDNLMTmLIMALLLISLLAASLAYEWAEKGL 111
Cdd:MTH00055  37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFG-FWVMYLFLIILTIGLIYEWVKGGL 115


                 ..
gi 195933657 112 EW 113
Cdd:MTH00055 116 EW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 8.89e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 64.70  E-value: 8.89e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   1 MNLILALFTNMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQ 80
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                         90       100       110
                 ....*....|....*....|....*....|....
gi 195933657  81 TDNLMTMLIMALLLISLLAAS-LAYEWAEKGLEW 113
Cdd:MTH00018  79 YNQIAPFGFWTMVGFLFILTLgLIYEWIKGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 12-78 2.11e-14

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 64.11  E-value: 2.11e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 195933657  12 LLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWA 78
Cdd:PRK06602  20 GLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWA 84
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-113 7.42e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 59.95  E-value: 7.42e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657  31 AEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTDNLMTMlIMALLLISLLAASLAYEWAEKG 110
Cdd:MTH00030  41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSF-WIVYTFLIVLAIGLAYEWIKGG 119


                 ...
gi 195933657 111 LEW 113
Cdd:MTH00030 120 LEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-113 2.49e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 45.43  E-value: 2.49e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657  33 KASPYECGFDP----VGSARLPfsMKFFLVAITFLLFDLEIALLLPlpWASQTDNLMTM-LIMALLLISLLAASLAYEWA 107
Cdd:PRK07928  37 KLEAYECGIEPtpqpAGGGRFP--VKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVFgLVEMALFMLTVFVAYAYVWR 112


                 ....*.
gi 195933657 108 EKGLEW 113
Cdd:PRK07928 113 RGGLEW 118
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-73 3.49e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 44.88  E-value: 3.49e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 195933657   1 MNLILALFTNMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLL 73
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
ndhC CHL00022
NADH dehydrogenase subunit 3
 11-84 4.24e-07

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 44.98  E-value: 4.24e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 195933657  11 MLLASLLVLIAFWLPQL----NIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTDNL 84
Cdd:CHL00022  14 LIISSLIPILAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVL 89
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
7-113 2.96e-06

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 42.81  E-value: 2.96e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195933657   7 LFTNMLLASLLVLIAFWLPQLNIYAEKASPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTDNL-M 85
Cdd:PRK07756  16 LLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFL--YPWAVAYDKLgL 93

                         90       100
                 ....*....|....*....|....*...
gi 195933657  86 TMLIMALLLISLLAASLAYEWAEKGLEW 113
Cdd:PRK07756  94 FALIEMLIFVVMLLVGLAYAWKKKVLQW 121
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-76 1.48e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.34  E-value: 1.48e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 195933657  35 SPYECGFDPVGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-78 1.87e-03

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 35.41  E-value: 1.87e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 195933657  33 KASPYECGFDPVGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWA 78
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWA 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH