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Conserved domains on  [gi|71754935|ref|XP_828382|]
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60S ribosomal protein L37, putative [Trypanosoma brucei brucei TREU927]

Protein Classification

60S ribosomal protein L37( domain architecture ID 10015186)

60S ribosomal protein L37 binds to the 23S rRNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-84 8.10e-34

60S ribosomal protein L37; Provisional


:

Pssm-ID: 240257  Cd Length: 91  Bit Score: 111.41  E-value: 8.10e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71754935   1 MTKGTTSMGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRAQRRRYNWSVKAIKRRRTGTGRCRYLKVVHRRIRNHFKT 80
Cdd:PTZ00073  1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTGTGRCRYLKTVARRAKNGFRE 80


                ....
gi 71754935  81 DIKA 84
Cdd:PTZ00073 81 GTKA 84
 
Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-84 8.10e-34

60S ribosomal protein L37; Provisional


Pssm-ID: 240257  Cd Length: 91  Bit Score: 111.41  E-value: 8.10e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71754935   1 MTKGTTSMGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRAQRRRYNWSVKAIKRRRTGTGRCRYLKVVHRRIRNHFKT 80
Cdd:PTZ00073  1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTGTGRCRYLKTVARRAKNGFRE 80


                ....
gi 71754935  81 DIKA 84
Cdd:PTZ00073 81 GTKA 84
Ribosomal_L37e pfam01907
Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and ...
 2-54 1.88e-22

Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc.


Pssm-ID: 460380  Cd Length: 53  Bit Score: 81.47  E-value: 1.88e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 71754935    2 TKGTTSMGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRAQRRRYNWSVKAI 54
Cdd:pfam01907  1 TKGTPSFGKRHNKTHTLCRRCGRRSYHVQKKTCASCGYPSARKRKYNWSAKAK 53
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-50 6.14e-15

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441729  Cd Length: 52  Bit Score: 62.27  E-value: 6.14e-15
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|..
gi 71754935  1 MTKGTTSMGQRH-GRTHILCRRCGRNAYHVQWERCAACAYPRAQR-RRYNWS 50
Cdd:COG2126  1 MSKGTPSMGKRNkGKTHIRCRRCGRNSYNVRKKYCASCGFGKSKRiRSYSWQ 52
 
Name Accession Description Interval E-value
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 1-84 8.10e-34

60S ribosomal protein L37; Provisional


Pssm-ID: 240257  Cd Length: 91  Bit Score: 111.41  E-value: 8.10e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71754935   1 MTKGTTSMGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRAQRRRYNWSVKAIKRRRTGTGRCRYLKVVHRRIRNHFKT 80
Cdd:PTZ00073  1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTGTGRCRYLKTVARRAKNGFRE 80


                ....
gi 71754935  81 DIKA 84
Cdd:PTZ00073 81 GTKA 84
Ribosomal_L37e pfam01907
Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and ...
 2-54 1.88e-22

Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc.


Pssm-ID: 460380  Cd Length: 53  Bit Score: 81.47  E-value: 1.88e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 71754935    2 TKGTTSMGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRAQRRRYNWSVKAI 54
Cdd:pfam01907  1 TKGTPSFGKRHNKTHTLCRRCGRRSYHVQKKTCASCGYPSARKRKYNWSAKAK 53
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-50 6.14e-15

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441729  Cd Length: 52  Bit Score: 62.27  E-value: 6.14e-15
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|..
gi 71754935  1 MTKGTTSMGQRH-GRTHILCRRCGRNAYHVQWERCAACAYPRAQR-RRYNWS 50
Cdd:COG2126  1 MSKGTPSMGKRNkGKTHIRCRRCGRNSYNVRKKYCASCGFGKSKRiRSYSWQ 52
rpl37e PRK04179
50S ribosomal protein L37e; Reviewed
 1-55 2.65e-13

50S ribosomal protein L37e; Reviewed


Pssm-ID: 235242  Cd Length: 62  Bit Score: 58.49  E-value: 2.65e-13
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 71754935   1 MTKGTTSMGQRH-GRTHILCRRCGRNAYHVQWERCAACAYPRAQR-RRYNWSVKAIK 55
Cdd:PRK04179  1 MSKGTPSMGKRNkGKTHIRCRRCGRHSYNVRKKYCAACGFGRSKRiRRYSWQNKKVN 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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