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Conserved domains on  [gi|50310223|ref|XP_455131|]
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uncharacterized protein KLLA0_F01144g [Kluyveromyces lactis]

Protein Classification

YqeH domain-containing protein( domain architecture ID 10111420)

YqeH domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YqeH cd01855
Circularly permuted YqeH GTPase; YqeH is an essential GTP-binding protein. Depletion of YqeH ...
 142-349 1.52e-46

Circularly permuted YqeH GTPase; YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.


:

Pssm-ID: 206748 [Multi-domain]  Cd Length: 191  Bit Score: 162.05  E-value: 1.52e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223 142 CKRCVDAISHNRYNSSDFPIHSFNDIKGALPH-AANVYHVVSLSDFPLSLDkTILAE--KNNRNYLLLSKADQITYKSSM 218
Cdd:cd01855   1 CQRCFKLKHYNKLLDVEIPDEDFLEILSTLLNdNALVVHVVDIFDFPGSLI-PGLAEliGAKPVILVGNKIDLLPKDVKP 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223 219 lphkgsAFFAEFCRRHI---GVHVKKVVLFSNPRNWNIPSVINALAK------RCYLLGNPNVGKTSLINSLLHEKSTSF 289
Cdd:cd01855  80 ------NRLKQWVKKRLkigGLKIKDVILVSAKKGWGVEELIEEIKKlakyrgDVYVVGATNVGKSTLINALLKSNGGKV 153

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50310223 290 QAQldkrgnvigppkgheqiqstrrrAIFNEGGVSHIPNFTRTMQTY-LIEDKVVNDLPGY 349
Cdd:cd01855 154 QAQ-----------------------ALVQRLTVSPIPGTTLGLIKIpLGEGKKLYDTPGI 191
 
Name Accession Description Interval E-value
YqeH cd01855
Circularly permuted YqeH GTPase; YqeH is an essential GTP-binding protein. Depletion of YqeH ...
 142-349 1.52e-46

Circularly permuted YqeH GTPase; YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.


Pssm-ID: 206748 [Multi-domain]  Cd Length: 191  Bit Score: 162.05  E-value: 1.52e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223 142 CKRCVDAISHNRYNSSDFPIHSFNDIKGALPH-AANVYHVVSLSDFPLSLDkTILAE--KNNRNYLLLSKADQITYKSSM 218
Cdd:cd01855   1 CQRCFKLKHYNKLLDVEIPDEDFLEILSTLLNdNALVVHVVDIFDFPGSLI-PGLAEliGAKPVILVGNKIDLLPKDVKP 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223 219 lphkgsAFFAEFCRRHI---GVHVKKVVLFSNPRNWNIPSVINALAK------RCYLLGNPNVGKTSLINSLLHEKSTSF 289
Cdd:cd01855  80 ------NRLKQWVKKRLkigGLKIKDVILVSAKKGWGVEELIEEIKKlakyrgDVYVVGATNVGKSTLINALLKSNGGKV 153

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50310223 290 QAQldkrgnvigppkgheqiqstrrrAIFNEGGVSHIPNFTRTMQTY-LIEDKVVNDLPGY 349
Cdd:cd01855 154 QAQ-----------------------ALVQRLTVSPIPGTTLGLIKIpLGEGKKLYDTPGI 191
GTPase_YqeH TIGR03597
ribosome biogenesis GTPase YqeH; This family describes YqeH, a member of a larger family of ...
 71-517 3.03e-07

ribosome biogenesis GTPase YqeH; This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. [Protein synthesis, Other]


Pssm-ID: 213834 [Multi-domain]  Cd Length: 360  Bit Score: 52.62  E-value: 3.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223    71 CKSCGVELQSKNPSVTGYYKPPRAVRKDagtiedlkylmftqelqlkkheiglldpdtdpdykepipkrLVCKRCVDAIS 150
Cdd:TIGR03597   1 CIGCGAAIQTTDPKKPGYTPKSALEKEE-----------------------------------------VYCQRCFRLKH 39

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   151 HNRY-----NSSDFP--IHSFNDIKgalphaANVYHVVSLSDFPLSLDKTIL-AEKNNRNYLLLSKADqitykssMLP-H 221
Cdd:TIGR03597  40 YNEIqdvelNDDDFLnlLNSLGDSN------ALIVYVVDIFDFEGSLIPELKrFVGGNPVLLVGNKID-------LLPkS 106

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   222 KGSAFFAEFCRRHI---GVHVKKVVLFSNPRNWNIPSVINALA-----KRCYLLGNPNVGKTSLINSLLhekstsfqAQL 293
Cdd:TIGR03597 107 VNLSKIKEWMKKRAkelGLKPVDIILVSAKKGNGIDELLDKIKkarnkKDVYVVGVTNVGKSSLINKLL--------KQN 178

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   294 DKRGNVIgppkgheqiqstrrraifnegGVSHIPNFTRTM-QTYLIEDKVVNDLPGYtMDPTKvsdLANYIEKETLDNIr 372
Cdd:TIGR03597 179 NGDKDVI---------------------TTSPFPGTTLDLiEIPLDDGHSLYDTPGI-INSHQ---MAHYLDKKDLKYI- 232

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   373 kTSKfkidKLIKQNYTSLTGSKTgkcLSFGGIFHLVPPNSTINQVVNYIP--LPEHEfSNVEKAVSLslevlqSENHsLR 450
Cdd:TIGR03597 233 -TPK----KEIKPKTYQLNPNQT---LFLGGLARFDYLKGEKTSFTFYVSneLNIHR-TKLENADEL------YNKH-LG 296

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50310223   451 QFFAL--KKPFTDIKMFDRHVIPPFNGAiEIVLKDIGYFQVKPTGKygfngLYELWVPKGIRVCIREPL 517
Cdd:TIGR03597 297 NLLSPpcLDDKFNLPELVFHTFTIKEKT-DIVFSGLGWITVKRGGA-----KVKVYAPKGVGVSLRKAL 359
MMR_HSR1 pfam01926
50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete ...
 263-348 3.02e-05

50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.


Pssm-ID: 460387 [Multi-domain]  Cd Length: 113  Bit Score: 43.38  E-value: 3.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   263 RCYLLGNPNVGKTSLINSLlhekstsfqaqldkrgnvigppkgheqiqsTRRRAIfneggVSHIPNFTRTMQTYLIEDKV 342
Cdd:pfam01926   1 RVALVGRPNVGKSTLINAL------------------------------TGAKAI-----VSDYPGTTRDPNEGRLELKG 45

                          90
                  ....*....|
gi 50310223   343 VN----DLPG 348
Cdd:pfam01926  46 KQiilvDTPG 55
FeoB COG0370
Fe2+ transporter FeoB [Inorganic ion transport and metabolism];
266-281 5.09e-03

Fe2+ transporter FeoB [Inorganic ion transport and metabolism];


Pssm-ID: 440139 [Multi-domain]  Cd Length: 662  Bit Score: 39.72  E-value: 5.09e-03
                        10
                ....*....|....*.
gi 50310223 266 LLGNPNVGKTSLINSL 281
Cdd:COG0370   8 LVGNPNVGKTTLFNAL 23
 
Name Accession Description Interval E-value
YqeH cd01855
Circularly permuted YqeH GTPase; YqeH is an essential GTP-binding protein. Depletion of YqeH ...
 142-349 1.52e-46

Circularly permuted YqeH GTPase; YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.


Pssm-ID: 206748 [Multi-domain]  Cd Length: 191  Bit Score: 162.05  E-value: 1.52e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223 142 CKRCVDAISHNRYNSSDFPIHSFNDIKGALPH-AANVYHVVSLSDFPLSLDkTILAE--KNNRNYLLLSKADQITYKSSM 218
Cdd:cd01855   1 CQRCFKLKHYNKLLDVEIPDEDFLEILSTLLNdNALVVHVVDIFDFPGSLI-PGLAEliGAKPVILVGNKIDLLPKDVKP 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223 219 lphkgsAFFAEFCRRHI---GVHVKKVVLFSNPRNWNIPSVINALAK------RCYLLGNPNVGKTSLINSLLHEKSTSF 289
Cdd:cd01855  80 ------NRLKQWVKKRLkigGLKIKDVILVSAKKGWGVEELIEEIKKlakyrgDVYVVGATNVGKSTLINALLKSNGGKV 153

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50310223 290 QAQldkrgnvigppkgheqiqstrrrAIFNEGGVSHIPNFTRTMQTY-LIEDKVVNDLPGY 349
Cdd:cd01855 154 QAQ-----------------------ALVQRLTVSPIPGTTLGLIKIpLGEGKKLYDTPGI 191
GTPase_YqeH TIGR03597
ribosome biogenesis GTPase YqeH; This family describes YqeH, a member of a larger family of ...
 71-517 3.03e-07

ribosome biogenesis GTPase YqeH; This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. [Protein synthesis, Other]


Pssm-ID: 213834 [Multi-domain]  Cd Length: 360  Bit Score: 52.62  E-value: 3.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223    71 CKSCGVELQSKNPSVTGYYKPPRAVRKDagtiedlkylmftqelqlkkheiglldpdtdpdykepipkrLVCKRCVDAIS 150
Cdd:TIGR03597   1 CIGCGAAIQTTDPKKPGYTPKSALEKEE-----------------------------------------VYCQRCFRLKH 39

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   151 HNRY-----NSSDFP--IHSFNDIKgalphaANVYHVVSLSDFPLSLDKTIL-AEKNNRNYLLLSKADqitykssMLP-H 221
Cdd:TIGR03597  40 YNEIqdvelNDDDFLnlLNSLGDSN------ALIVYVVDIFDFEGSLIPELKrFVGGNPVLLVGNKID-------LLPkS 106

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   222 KGSAFFAEFCRRHI---GVHVKKVVLFSNPRNWNIPSVINALA-----KRCYLLGNPNVGKTSLINSLLhekstsfqAQL 293
Cdd:TIGR03597 107 VNLSKIKEWMKKRAkelGLKPVDIILVSAKKGNGIDELLDKIKkarnkKDVYVVGVTNVGKSSLINKLL--------KQN 178

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   294 DKRGNVIgppkgheqiqstrrraifnegGVSHIPNFTRTM-QTYLIEDKVVNDLPGYtMDPTKvsdLANYIEKETLDNIr 372
Cdd:TIGR03597 179 NGDKDVI---------------------TTSPFPGTTLDLiEIPLDDGHSLYDTPGI-INSHQ---MAHYLDKKDLKYI- 232

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   373 kTSKfkidKLIKQNYTSLTGSKTgkcLSFGGIFHLVPPNSTINQVVNYIP--LPEHEfSNVEKAVSLslevlqSENHsLR 450
Cdd:TIGR03597 233 -TPK----KEIKPKTYQLNPNQT---LFLGGLARFDYLKGEKTSFTFYVSneLNIHR-TKLENADEL------YNKH-LG 296

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50310223   451 QFFAL--KKPFTDIKMFDRHVIPPFNGAiEIVLKDIGYFQVKPTGKygfngLYELWVPKGIRVCIREPL 517
Cdd:TIGR03597 297 NLLSPpcLDDKFNLPELVFHTFTIKEKT-DIVFSGLGWITVKRGGA-----KVKVYAPKGVGVSLRKAL 359
MMR_HSR1 pfam01926
50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete ...
 263-348 3.02e-05

50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.


Pssm-ID: 460387 [Multi-domain]  Cd Length: 113  Bit Score: 43.38  E-value: 3.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   263 RCYLLGNPNVGKTSLINSLlhekstsfqaqldkrgnvigppkgheqiqsTRRRAIfneggVSHIPNFTRTMQTYLIEDKV 342
Cdd:pfam01926   1 RVALVGRPNVGKSTLINAL------------------------------TGAKAI-----VSDYPGTTRDPNEGRLELKG 45

                          90
                  ....*....|
gi 50310223   343 VN----DLPG 348
Cdd:pfam01926  46 KQiilvDTPG 55
YlqF_related_GTPase cd01849
Circularly permuted YlqF-related GTPases; These proteins are found in bacteria, eukaryotes, ...
 177-291 4.58e-04

Circularly permuted YlqF-related GTPases; These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.


Pssm-ID: 206746 [Multi-domain]  Cd Length: 146  Bit Score: 40.83  E-value: 4.58e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223 177 VYHVVSLSDFPLSLDKTIL---AEKNNRNYLLLSKADQI---TYKSSMLPHKGSAFFAEFCRRhiGVHVKKVVLFSNPRN 250
Cdd:cd01849   3 VVEVVDARDPLSSRNPDIEvliNEKNKKLIMVLNKADLVpkeVLRKWVAELSELYGTKTFFIS--ATNGQGILKLKAEIT 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 50310223 251 WNIPSVINALAKRCYLLGNPNVGKTSLINSLLHEKSTSFQA 291
Cdd:cd01849  81 KQKLKLKYKKGIRVGVVGLPNVGKSSFINALLNKFKLKVGS 121
FeoB_N pfam02421
Ferrous iron transport protein B; Escherichia coli has an iron(II) transport system (feo) ...
 262-281 7.05e-04

Ferrous iron transport protein B; Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.


Pssm-ID: 460552 [Multi-domain]  Cd Length: 156  Bit Score: 40.51  E-value: 7.05e-04
                          10        20
                  ....*....|....*....|
gi 50310223   262 KRCYLLGNPNVGKTSLINSL 281
Cdd:pfam02421   1 ITIALVGNPNVGKTTLFNAL 20
HSR1_MMR1 cd01857
A circularly permuted subfamily of the Ras GTPases; Human HSR1 is localized to the human MHC ...
 266-288 2.34e-03

A circularly permuted subfamily of the Ras GTPases; Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus.


Pssm-ID: 206750 [Multi-domain]  Cd Length: 140  Bit Score: 38.75  E-value: 2.34e-03
                        10        20
                ....*....|....*....|...
gi 50310223 266 LLGNPNVGKTSLINSLLHEKSTS 288
Cdd:cd01857  87 LVGYPNVGKSSLINALVGSKKVS 109
FeoB cd01879
Ferrous iron transport protein B (FeoB) family; Ferrous iron transport protein B (FeoB) ...
 266-281 3.08e-03

Ferrous iron transport protein B (FeoB) family; Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.


Pssm-ID: 206667 [Multi-domain]  Cd Length: 159  Bit Score: 38.59  E-value: 3.08e-03
                        10
                ....*....|....*.
gi 50310223 266 LLGNPNVGKTSLINSL 281
Cdd:cd01879   2 LVGNPNVGKTTLFNAL 17
FeoB COG0370
Fe2+ transporter FeoB [Inorganic ion transport and metabolism];
266-281 5.09e-03

Fe2+ transporter FeoB [Inorganic ion transport and metabolism];


Pssm-ID: 440139 [Multi-domain]  Cd Length: 662  Bit Score: 39.72  E-value: 5.09e-03
                        10
                ....*....|....*.
gi 50310223 266 LLGNPNVGKTSLINSL 281
Cdd:COG0370   8 LVGNPNVGKTTLFNAL 23
RsgA_GTPase pfam03193
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are ...
 174-282 5.52e-03

RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are broadly conserved in bacteria and are indispensable for growth. The GTPase domain of RsgA is very similar to several P-loop GTPases, but differs in having a circular permutation of the GTPase structure described by a G4-G1-G3 pattern.


Pssm-ID: 427191 [Multi-domain]  Cd Length: 174  Bit Score: 38.29  E-value: 5.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50310223   174 AANVYH---VVSLSDFPLSLDKT----ILAEKNNRNYLL-LSKADQITykssmlPHKGSAFFAEFcRRHIGVHVKKVvlf 245
Cdd:pfam03193  20 VANVDQaviVFSLKEPDFNLNLLdrflVLAEASGIEPVIvLNKIDLLD------EEEELEELLKI-YRAIGYPVLFV--- 89

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 50310223   246 SNPRNWNIPSVINALA-KRCYLLGNPNVGKTSLINSLL 282
Cdd:pfam03193  90 SAKTGEGIEALKELLKgKTTVLAGQSGVGKSTLLNALL 127
RbgA COG1161
Ribosome biogenesis GTPase RbgA [Translation, ribosomal structure and biogenesis];
253-287 6.65e-03

Ribosome biogenesis GTPase RbgA [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440775 [Multi-domain]  Cd Length: 279  Bit Score: 38.94  E-value: 6.65e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 50310223 253 IPSVINALAK---------RCYLLGNPNVGKTSLINSLLHEKST 287
Cdd:COG1161  96 LIEAIRELAPekgikrrpiRVMIVGIPNVGKSTLINRLAGKKVA 139
YlqF cd01856
Circularly permuted YlqF GTPase; Proteins of the YlqF family contain all sequence motifs ...
 263-287 9.52e-03

Circularly permuted YlqF GTPase; Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga).


Pssm-ID: 206749 [Multi-domain]  Cd Length: 171  Bit Score: 37.51  E-value: 9.52e-03
                        10        20
                ....*....|....*....|....*
gi 50310223 263 RCYLLGNPNVGKTSLINSLLHEKST 287
Cdd:cd01856 117 RAMVVGIPNVGKSTLINRLRGKKVA 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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