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Conserved domains on  [gi|2797474489|ref|XP_067522511|]
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uncharacterized protein RO3G_11826 [Rhizopus delemar RA 99-880]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 69-131 9.79e-22

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


:

Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 88.57  E-value: 9.79e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2797474489  69 SVVEEMNIRNLRYDLNTYNALLTAYARVKDQKAISETLDRMEKEGIKPTIDTYNYIMKAFGNN 131
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 68-467 4.91e-20

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 94.17  E-value: 4.91e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489   68 MSVVEEMNIRNLRYDLNTYNAllTAYARVKDQKAISETLdRMEKEGIKPTIDTYNYIMKAFGNNKDTNAQLRLKDEMQNK 147
Cdd:PLN03218   390 IDLLEDMEKRGLLDMDKIYHA--KFFKACKKQRAVKEAF-RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  148 GIELNGVTYIHLLE--AQQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGAC-RASSSDVAFKLLKEAEDNGLPVDsqpRM 224
Cdd:PLN03218   467 GLKADCKLYTTLIStcAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCaRAGQVAKAFGAYGIMRSKNVKPD---RV 543

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  225 YFNVL-----RLGTREDEIDIVTYCwnKAVGKySLRPDEGTCLQVLRVAAKRGDSKLAKDV---IRQLSTSGYPykqHYF 296
Cdd:PLN03218   544 VFNALisacgQSGAVDRAFDVLAEM--KAETH-PIDPDHITVGALMKACANAGQVDRAKEVyqmIHEYNIKGTP---EVY 617

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  297 TPLMEAYLVKDDLVSAFNVLDIMRVSGVPPTIKSIQSLREkLSSDSKALDDAYDILKELRKKKKSVDIVDFNVLLLASVD 376
Cdd:PLN03218   618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD-VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  377 NGDVERTFGIYREAAKFGVIPDVDTYNAVLEVCVKGrvNKMDRA--VIEEMKKANVSPNADTFAkMIELSCNRT-NYEKA 453
Cdd:PLN03218   697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG--NQLPKAleVLSEMKRLGLCPNTITYS-ILLVASERKdDADVG 773

                          410
                   ....*....|....
gi 2797474489  454 FNYLEEMKERGFLP 467
Cdd:PLN03218   774 LDLLSQAKEDGIKP 787
 
Name Accession Description Interval E-value
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 69-131 9.79e-22

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 88.57  E-value: 9.79e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2797474489  69 SVVEEMNIRNLRYDLNTYNALLTAYARVKDQKAISETLDRMEKEGIKPTIDTYNYIMKAFGNN 131
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 68-467 4.91e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 94.17  E-value: 4.91e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489   68 MSVVEEMNIRNLRYDLNTYNAllTAYARVKDQKAISETLdRMEKEGIKPTIDTYNYIMKAFGNNKDTNAQLRLKDEMQNK 147
Cdd:PLN03218   390 IDLLEDMEKRGLLDMDKIYHA--KFFKACKKQRAVKEAF-RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  148 GIELNGVTYIHLLE--AQQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGAC-RASSSDVAFKLLKEAEDNGLPVDsqpRM 224
Cdd:PLN03218   467 GLKADCKLYTTLIStcAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCaRAGQVAKAFGAYGIMRSKNVKPD---RV 543

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  225 YFNVL-----RLGTREDEIDIVTYCwnKAVGKySLRPDEGTCLQVLRVAAKRGDSKLAKDV---IRQLSTSGYPykqHYF 296
Cdd:PLN03218   544 VFNALisacgQSGAVDRAFDVLAEM--KAETH-PIDPDHITVGALMKACANAGQVDRAKEVyqmIHEYNIKGTP---EVY 617

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  297 TPLMEAYLVKDDLVSAFNVLDIMRVSGVPPTIKSIQSLREkLSSDSKALDDAYDILKELRKKKKSVDIVDFNVLLLASVD 376
Cdd:PLN03218   618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD-VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  377 NGDVERTFGIYREAAKFGVIPDVDTYNAVLEVCVKGrvNKMDRA--VIEEMKKANVSPNADTFAkMIELSCNRT-NYEKA 453
Cdd:PLN03218   697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG--NQLPKAleVLSEMKRLGLCPNTITYS-ILLVASERKdDADVG 773

                          410
                   ....*....|....
gi 2797474489  454 FNYLEEMKERGFLP 467
Cdd:PLN03218   774 LDLLSQAKEDGIKP 787
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 139-196 9.66e-19

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 80.09  E-value: 9.66e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 139 RLKDEMQNKGIELNGVTYIHLLEA--QQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGAC 196
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAyaNVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 85-118 5.30e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.74  E-value: 5.30e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2797474489  85 TYNALLTAYARVKD-QKAIsETLDRMEKEGIKPTI 118
Cdd:TIGR00756   2 TYNTLIDGLCKAGRvEEAL-ELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 69-131 9.79e-22

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 88.57  E-value: 9.79e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2797474489  69 SVVEEMNIRNLRYDLNTYNALLTAYARVKDQKAISETLDRMEKEGIKPTIDTYNYIMKAFGNN 131
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 68-467 4.91e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 94.17  E-value: 4.91e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489   68 MSVVEEMNIRNLRYDLNTYNAllTAYARVKDQKAISETLdRMEKEGIKPTIDTYNYIMKAFGNNKDTNAQLRLKDEMQNK 147
Cdd:PLN03218   390 IDLLEDMEKRGLLDMDKIYHA--KFFKACKKQRAVKEAF-RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  148 GIELNGVTYIHLLE--AQQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGAC-RASSSDVAFKLLKEAEDNGLPVDsqpRM 224
Cdd:PLN03218   467 GLKADCKLYTTLIStcAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCaRAGQVAKAFGAYGIMRSKNVKPD---RV 543

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  225 YFNVL-----RLGTREDEIDIVTYCwnKAVGKySLRPDEGTCLQVLRVAAKRGDSKLAKDV---IRQLSTSGYPykqHYF 296
Cdd:PLN03218   544 VFNALisacgQSGAVDRAFDVLAEM--KAETH-PIDPDHITVGALMKACANAGQVDRAKEVyqmIHEYNIKGTP---EVY 617

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  297 TPLMEAYLVKDDLVSAFNVLDIMRVSGVPPTIKSIQSLREkLSSDSKALDDAYDILKELRKKKKSVDIVDFNVLLLASVD 376
Cdd:PLN03218   618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD-VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  377 NGDVERTFGIYREAAKFGVIPDVDTYNAVLEVCVKGrvNKMDRA--VIEEMKKANVSPNADTFAkMIELSCNRT-NYEKA 453
Cdd:PLN03218   697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG--NQLPKAleVLSEMKRLGLCPNTITYS-ILLVASERKdDADVG 773

                          410
                   ....*....|....
gi 2797474489  454 FNYLEEMKERGFLP 467
Cdd:PLN03218   774 LDLLSQAKEDGIKP 787
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 139-196 9.66e-19

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 80.09  E-value: 9.66e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 139 RLKDEMQNKGIELNGVTYIHLLEA--QQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGAC 196
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAyaNVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 83-433 4.07e-16

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 81.85  E-value: 4.07e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489   83 LNTYNALLTAYARVKDQKAISETLDRMEKEGIKPTIDTYNYIMKAFGNNKDTNAQLRLKDEMQNKGIELNGVTYIHLLE- 161
Cdd:PLN03218   437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDg 516

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  162 -AQQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGAC-RASSSDVAFKLLKEAEDNGLPVDSQPRMYFNVLRLGTREDEID 239
Cdd:PLN03218   517 cARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACgQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  240 IVTYCWnKAVGKYSLRPDEGTCLQVLRVAAKRGDSKLAKDVIRQLSTSGYPYKQHYFTPLMEAYLVKDDLVSAFNVLDIM 319
Cdd:PLN03218   597 RAKEVY-QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  320 RVSGVPPTIKSIQSLReKLSSDSKALDDAYDILKELRKKKKSVDIVDFNVLLLASVDNGDVERTFGIYREAAKFGVIPDV 399
Cdd:PLN03218   676 RKQGIKLGTVSYSSLM-GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754

                          330       340       350
                   ....*....|....*....|....*....|....
gi 2797474489  400 DTYNAVLEVCVKGRVNKMDRAVIEEMKKANVSPN 433
Cdd:PLN03218   755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 64-216 4.43e-12

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 68.75  E-value: 4.43e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489   64 LEKVMSVVEEMNIRNLRYDLNTYNALLTAYARVKDQKAISETLDRMEKEGIKPTIDTYNYIMKAFGNNKDTNAQLRLKDE 143
Cdd:PLN03218   630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2797474489  144 MQNKGIELNGVTYIHLLEAQ-QGN-LQLALEIFKEMKQKGIAPTVLSYSFLIGAC-RASSSDVAFKLLKEAEDNGL 216
Cdd:PLN03218   710 IKSIKLRPTVSTMNALITALcEGNqLPKALEVLSEMKRLGLCPNTITYSILLVASeRKDDADVGLDLLSQAKEDGI 785
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 162-356 5.64e-12

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 65.11  E-value: 5.64e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 162 AQQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGACraSSSDVAFKLLKE-AEDNGLPVdsqprmyfnvlrlgtredeidi 240
Cdd:pfam17177  22 SKHADATGALALYDAAKAEGVRLAQYHYNVLLYLC--SKAADATDLKPQlAADRGFEV---------------------- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 241 vtYCWNKAVGkysLRPDEGTCLQVLRVAAKRGDSKLAKDVIRQLSTSGYPYKQHYFTPLMEAYLVKDDLVSAFNVLDIMR 320
Cdd:pfam17177  78 --FEAMKAQG---VSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHML 152

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2797474489 321 VSGVPPTIKSIQSLReKLSSDSKALDDAYDILKELR 356
Cdd:pfam17177 153 AHGVELEEPELAALL-KVSAKAGRADKVYAYLHRLR 187
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 64-196 3.93e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 65.67  E-value: 3.93e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489   64 LEKVMSVVEEMNIRNLRYDLNTYNALLTAYARVKDQKAISETLDRMEKEGIKPTIDTYNYIMKAFGNNKDTNAQLRLKDE 143
Cdd:PLN03218   665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2797474489  144 MQNKGIELNGVTYIHLLEA--QQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGAC 196
Cdd:PLN03218   745 MKRLGLCPNTITYSILLVAseRKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 269-416 4.34e-09

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 56.64  E-value: 4.34e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 269 AKRGDSKLAKDVIRQLSTSGYPYKQHYFTPLM---------EAYLVKDDLVSAFNVLDIMRVSGVPPTIKSIQSLrEKLS 339
Cdd:pfam17177  22 SKHADATGALALYDAAKAEGVRLAQYHYNVLLylcskaadaTDLKPQLAADRGFEVFEAMKAQGVSPNEATYTAV-ARLA 100

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2797474489 340 SDSKALDDAYDILKELRKKKKSVDIVDFNVLLLASVDNGDVERTFGIYREAAKFGVIPDVDTYNAVLEVCVK-GRVNK 416
Cdd:pfam17177 101 AAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKaGRADK 178
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 85-467 1.08e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 57.96  E-value: 1.08e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489   85 TYNALLTAYARVKDQKAISETLDRMEKEGIKPTIDTYNYIMKAFGNNKDTNAQLRLKDEMQNKGIELNGVTYIHLLEA-- 162
Cdd:PLN03218   581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVag 660

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  163 QQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGAC-RASSSDVAFKLLKEAEDNGL-PVDSQprmyFNVLrlgtredeidI 240
Cdd:PLN03218   661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACsNAKNWKKALELYEDIKSIKLrPTVST----MNAL----------I 726

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  241 VTYCwnkavgkyslrpdEGTclQVLRvaakrgdsklAKDVIRQLSTSGYPYKQHYFTPLMEAYLVKDDLVSAFNVLDIMR 320
Cdd:PLN03218   727 TALC-------------EGN--QLPK----------ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  321 VSGVPPTI---KSIQSLReklssdskalddaydilkeLRKKKKSVD----IVDFNvLLLASVDNGDVERTFGIYREAAKF 393
Cdd:PLN03218   782 EDGIKPNLvmcRCITGLC-------------------LRRFEKACAlgepVVSFD-SGRPQIENKWTSWALMVYRETISA 841

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  394 GVIPDVDTYNAVLEVCVKGRVNKMDRAVIEEM-------KKANVSPNADTFAKmielscnrtnYE-KAFNYLEEMKERGF 465
Cdd:PLN03218   842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLgisadsqKQSNLSTLVDGFGE----------YDpRAFSLLEEAASLGV 911


                   ..
gi 2797474489  466 LP 467
Cdd:PLN03218   912 VP 913
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 154-196 5.13e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.28  E-value: 5.13e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2797474489 154 VTYIHLLEA--QQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGAC 196
Cdd:pfam13041   4 VTYNTLINGycKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 332-477 2.02e-07

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 51.63  E-value: 2.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 332 QSLREKLSSDSKALDDAYDIlkELRKKKKSVDIV----DFNVLL---------LASVDNGDVERTFGIYREAAKFGVIPD 398
Cdd:pfam17177  12 SELRFQLDKCSKHADATGAL--ALYDAAKAEGVRlaqyHYNVLLylcskaadaTDLKPQLAADRGFEVFEAMKAQGVSPN 89

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2797474489 399 VDTYNAVLEVCVKGRVNKMDRAVIEEMKKANVSPNADTFAKMIELSCNRTNYEKAFNYLEEMKERGFLPPQTCYEVLAK 477
Cdd:pfam17177  90 EATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLK 168
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 85-130 9.15e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.82  E-value: 9.15e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2797474489  85 TYNALLTAYARVKDQKAISETLDRMEKEGIKPTIDTYNYIMKAFGN 130
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 351-411 3.75e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 44.27  E-value: 3.75e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2797474489 351 ILKELRKKKKSVDIVDFNVLLLASVDNGDVERTFGIYREAAKFGVIPDVDTYNAVLEVCVK 411
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 397-441 5.46e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.51  E-value: 5.46e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2797474489 397 PDVDTYNAVLEVCVKgrVNKMDRA--VIEEMKKANVSPNADTFAKMI 441
Cdd:pfam13041   1 PDVVTYNTLINGYCK--KGKVEEAfkLFNEMKKRGVKPNVYTYTILI 45
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 116-156 1.58e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.97  E-value: 1.58e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2797474489 116 PTIDTYNYIMKAFGNNKDTNAQLRLKDEMQNKGIELNGVTY 156
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTY 41
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 82-443 2.42e-05

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 47.17  E-value: 2.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  82 DLNTYNALLTAYARVKDQKAISETLDRMEKEGIKPTIDTYNYIMKAFGNNKDTNAQLRLKDEMQNKgielNGVTYIHLLE 161
Cdd:PLN03081  122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 162 A--QQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGACRASSSDVAFKLLkeaednglpvdsqprmYFNVLRLGTREDE-- 237
Cdd:PLN03081  198 GlvDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL----------------HCCVLKTGVVGDTfv 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 238 ----IDIVTYC--------------------WNKAVGKYSL--RPDEGTCL-----------------QVLRVAAKRGDS 274
Cdd:PLN03081  262 scalIDMYSKCgdiedarcvfdgmpekttvaWNSMLAGYALhgYSEEALCLyyemrdsgvsidqftfsIMIRIFSRLALL 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 275 KLAKDVIRQLSTSGYPYkqhyftplmeaylvkdDLVSAFNVLDimrvsgvpptiksiqslrekLSSDSKALDDAYDILKE 354
Cdd:PLN03081  342 EHAKQAHAGLIRTGFPL----------------DIVANTALVD--------------------LYSKWGRMEDARNVFDR 385

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 355 LRKKkksvDIVDFNVLLLASVDNGDVERTFGIYREAAKFGVIPDVDTYNAVLEVCVKGRVNKMDRAVIEEMKKAN-VSPN 433
Cdd:PLN03081  386 MPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHrIKPR 461

                         410
                  ....*....|
gi 2797474489 434 ADTFAKMIEL 443
Cdd:PLN03081  462 AMHYACMIEL 471
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 386-447 1.61e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.65  E-value: 1.61e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2797474489 386 IYREAAKFGVIPDVDTYNAVLEVCVKGRVNKMDRAVIEEMKKANVSPNADTFAKMIELSCNR 447
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PLN03077 PLN03077
Protein ECB2; Provisional
 73-460 8.34e-04

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 42.14  E-value: 8.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  73 EMNIRNLRY----DLNTYNALLTAYARVKDQKAISETLDRMekegikPTID--TYNYIMKAFGNNKDTNAQLRLKDEMQN 146
Cdd:PLN03077  208 EVHAHVVRFgfelDVDVVNALITMYVKCGDVVSARLVFDRM------PRRDciSWNAMISGYFENGECLEGLELFFTMRE 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 147 KGIELNGVTYIHLLEAQQ--GNLQLALEIFKEMKQKGIAPTVLSYSFLI---------GACRASSSDVAFK-------LL 208
Cdd:PLN03077  282 LSVDPDLMTITSVISACEllGDERLGREMHGYVVKTGFAVDVSVCNSLIqmylslgswGEAEKVFSRMETKdavswtaMI 361

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 209 KEAEDNGLPvDSQPRMYFNVLRLGTREDEIDI---VTYC-----WNKAVGKYSLRPDEGTCLQVLrVA---------AKR 271
Cdd:PLN03077  362 SGYEKNGLP-DKALETYALMEQDNVSPDEITIasvLSACaclgdLDVGVKLHELAERKGLISYVV-VAnaliemyskCKC 439

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 272 GDSKLA-------KDVIRQLST-SGYPYKQHYFTPL-----MEAYLvKDDLVSAFNVLDIMRVSGVPPTIKSIQS--LRE 336
Cdd:PLN03077  440 IDKALEvfhnipeKDVISWTSIiAGLRLNNRCFEALiffrqMLLTL-KPNSVTLIAALSACARIGALMCGKEIHAhvLRT 518

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489 337 KLSSDS---KALDDAY-------DILKELRKKKKsvDIVDFNVLLLASVDNGDVERTFGIYREAAKFGVIPDVDTYNAVL 406
Cdd:PLN03077  519 GIGFDGflpNALLDLYvrcgrmnYAWNQFNSHEK--DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2797474489 407 EVCVKGRVNKMDRAVIEEMK-KANVSPNADTFAKMIELSCNRTNYEKAFNYLEEM 460
Cdd:PLN03077  597 CACSRSGMVTQGLEYFHSMEeKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 78-222 1.12e-03

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 40.46  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2797474489  78 NLRYDLNTYnalltayARVKDQKAISETLDRMEKEGIKPTIDTYNYIM-------KAFGNNKDTNAQ--LRLKDEMQNKG 148
Cdd:pfam17177  13 ELRFQLDKC-------SKHADATGALALYDAAKAEGVRLAQYHYNVLLylcskaaDATDLKPQLAADrgFEVFEAMKAQG 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2797474489 149 IELNGVTYIHL--LEAQQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGA-CRASSSDVAFkllkEAEDNGLPVDSQP 222
Cdd:pfam17177  86 VSPNEATYTAVarLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAyCEAGDADKAY----EVEEHMLAHGVEL 158
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 363-411 1.77e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 36.19  E-value: 1.77e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2797474489 363 DIVDFNVLLLASVDNGDVERTFGIYREAAKFGVIPDVDTYNAVLEVCVK 411
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 85-118 5.30e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.74  E-value: 5.30e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2797474489  85 TYNALLTAYARVKD-QKAIsETLDRMEKEGIKPTI 118
Cdd:TIGR00756   2 TYNTLIDGLCKAGRvEEAL-ELFKEMKERGIEPDV 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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