NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2720991447|ref|XP_064499795|]
View 

collagen alpha-1(II) chain-like [Pseudopipra pipra]

Protein Classification

PksD superfamily protein( domain architecture ID 1904567)

PksD superfamily protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PksD super family cl43841
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
 98-626 1.04e-07

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


The actual alignment was detected with superfamily member COG3321:

Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 56.80  E-value: 1.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   98 EPPPRKAPSRPPPFafslsavARRAPTAPLAPRAPRGPPALAASEPPPRPLARARGGEGRGSDRGADGRGAAAAAGRRPP 177
Cdd:COG3321    855 GRGRRRVPLPTYPF-------QREDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALA 927

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  178 SDERREKEGRAARLPAAAPPGTLAARSRRAGAEERAAGSGQLGAAARPGGPARTAFGGAARPGSPLPAGTRAPAGRPRPA 257
Cdd:COG3321    928 ALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAA 1007

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  258 LRRGTDRRRTGAEGRAGLRGSERAAADLRPPGRDARFSFATILPPEPKDLGFPGAARRVMGITPPDRQSASFMVGTTTAA 337
Cdd:COG3321   1008 AALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALA 1087

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  338 SRGLAFLSLARPRARHAAGRGSAGADPPPKPARPAGRRLGRAAPPDVLEETATRRGGRGPVPEAPSAGAARSAAGGGAAT 417
Cdd:COG3321   1088 AALAAAALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAAL 1167

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  418 RCALRRYLRAGGASPRAFFFPPFSLSPLSGSPSRLRPHRRPALLAAGTHGRHPDPGRHRHLACFYPRTPEKLAGPRGRHT 497
Cdd:COG3321   1168 LAAAALLLALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAA 1247

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  498 ARYGEEAPPRREGRHLACHGKPTGRGDRPARTPASAAPLGRPRRSAGPPGALSHASRKASSIVTRGTAPRPLSLSLPLRG 577
Cdd:COG3321   1248 LAAAAAALLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLA 1327

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*....
gi 2720991447  578 GRHVPQAADAGGPHATLHGSLPARQEAGAAGRPAPDNPRFRPRRAHGRP 626
Cdd:COG3321   1328 AALAALAAAVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAAL 1376
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 748-1146 1.30e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 1.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  748 TEKKGREGAPLRPQPGPRPTDLRGTQPSGSQAGGAGPTARAARPPWLSRRPKRREGRGAAASPAnghrASPGLPGDSVGF 827
Cdd:PHA03247  2583 TSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV----PPPERPRDDPAP 2658

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  828 SVCRRGRRPQPGRPAPPPSARWAGPRlraeeggtnkraearrgRRLARPSGGPVTEPLRQPAGPrrgrtPTASPRHAAGT 907
Cdd:PHA03247  2659 GRVSRPRRARRLGRAAQASSPPQRPR-----------------RRAARPTVGSLTSLADPPPPP-----PTPEPAPHALV 2716

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  908 AAARQPrtgrrhPGPGHLRGSREAAGEKARAGSALRAPAANRPQQCPPPPPDDGRRLKAGPPKGRdaaASPPSHTIAFAR 987
Cdd:PHA03247  2717 SATPLP------PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP---AAGPPRRLTRPA 2787

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  988 GPRGAGSRHRLGLDAAVGPPRAPLGRPSPALPRLRFRARLSSSSPVIGPARGSRSRAPRLSRAGLPAARGVGRPVARAEG 1067
Cdd:PHA03247  2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447 1068 RAAADAEEKGPSEPALLDNPCPQYGQTRPGAAAPPKRLEAPQRGGAREQAASRLDLTGGGARQ---RPLGRLPGPAATTG 1144
Cdd:PHA03247  2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQpppPPPPRPQPPLAPTT 2947


                   ..
gi 2720991447 1145 LP 1146
Cdd:PHA03247  2948 DP 2949
 
Name Accession Description Interval E-value
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
 98-626 1.04e-07

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 56.80  E-value: 1.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   98 EPPPRKAPSRPPPFafslsavARRAPTAPLAPRAPRGPPALAASEPPPRPLARARGGEGRGSDRGADGRGAAAAAGRRPP 177
Cdd:COG3321    855 GRGRRRVPLPTYPF-------QREDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALA 927

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  178 SDERREKEGRAARLPAAAPPGTLAARSRRAGAEERAAGSGQLGAAARPGGPARTAFGGAARPGSPLPAGTRAPAGRPRPA 257
Cdd:COG3321    928 ALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAA 1007

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  258 LRRGTDRRRTGAEGRAGLRGSERAAADLRPPGRDARFSFATILPPEPKDLGFPGAARRVMGITPPDRQSASFMVGTTTAA 337
Cdd:COG3321   1008 AALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALA 1087

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  338 SRGLAFLSLARPRARHAAGRGSAGADPPPKPARPAGRRLGRAAPPDVLEETATRRGGRGPVPEAPSAGAARSAAGGGAAT 417
Cdd:COG3321   1088 AALAAAALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAAL 1167

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  418 RCALRRYLRAGGASPRAFFFPPFSLSPLSGSPSRLRPHRRPALLAAGTHGRHPDPGRHRHLACFYPRTPEKLAGPRGRHT 497
Cdd:COG3321   1168 LAAAALLLALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAA 1247

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  498 ARYGEEAPPRREGRHLACHGKPTGRGDRPARTPASAAPLGRPRRSAGPPGALSHASRKASSIVTRGTAPRPLSLSLPLRG 577
Cdd:COG3321   1248 LAAAAAALLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLA 1327

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*....
gi 2720991447  578 GRHVPQAADAGGPHATLHGSLPARQEAGAAGRPAPDNPRFRPRRAHGRP 626
Cdd:COG3321   1328 AALAALAAAVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAAL 1376
PHA03247 PHA03247
large tegument protein UL36; Provisional
 748-1146 1.30e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 1.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  748 TEKKGREGAPLRPQPGPRPTDLRGTQPSGSQAGGAGPTARAARPPWLSRRPKRREGRGAAASPAnghrASPGLPGDSVGF 827
Cdd:PHA03247  2583 TSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV----PPPERPRDDPAP 2658

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  828 SVCRRGRRPQPGRPAPPPSARWAGPRlraeeggtnkraearrgRRLARPSGGPVTEPLRQPAGPrrgrtPTASPRHAAGT 907
Cdd:PHA03247  2659 GRVSRPRRARRLGRAAQASSPPQRPR-----------------RRAARPTVGSLTSLADPPPPP-----PTPEPAPHALV 2716

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  908 AAARQPrtgrrhPGPGHLRGSREAAGEKARAGSALRAPAANRPQQCPPPPPDDGRRLKAGPPKGRdaaASPPSHTIAFAR 987
Cdd:PHA03247  2717 SATPLP------PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP---AAGPPRRLTRPA 2787

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  988 GPRGAGSRHRLGLDAAVGPPRAPLGRPSPALPRLRFRARLSSSSPVIGPARGSRSRAPRLSRAGLPAARGVGRPVARAEG 1067
Cdd:PHA03247  2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447 1068 RAAADAEEKGPSEPALLDNPCPQYGQTRPGAAAPPKRLEAPQRGGAREQAASRLDLTGGGARQ---RPLGRLPGPAATTG 1144
Cdd:PHA03247  2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQpppPPPPRPQPPLAPTT 2947


                   ..
gi 2720991447 1145 LP 1146
Cdd:PHA03247  2948 DP 2949
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
89-339 3.56e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.31  E-value: 3.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   89 GPAAGGGSEEPPPRKAPS----RPPPFAFSLSAVARRAPTAPLAPRAPRGPPALAASEPPPRPLARARGGEGRGSDRGAD 164
Cdd:PRK07003   365 GGAPGGGVPARVAGAVPApgarAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAAD 444

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  165 GRGAAAAAGRRPPSDERREKEGRAARLPAAAPPGTLAARSRRAGAEERAAGSGQLGAAARPGGPARTAFGGAARPGSPLP 244
Cdd:PRK07003   445 GDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAA 524

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  245 AGTRAPAGR-PRPALRRGTDRRRTGAEGRAGLRGseraaADLRPPGRDARFSFATILPPEPKDLGFPGAARRVMGITPPD 323
Cdd:PRK07003   525 AAPPAPEARpPTPAAAAPAARAGGAAAALDVLRN-----AGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTP 599

                          250
                   ....*....|....*.
gi 2720991447  324 RQSASFMVGTTTAASR 339
Cdd:PRK07003   600 RARAATGDAPPNGAAR 615
 
Name Accession Description Interval E-value
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
 98-626 1.04e-07

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 56.80  E-value: 1.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   98 EPPPRKAPSRPPPFafslsavARRAPTAPLAPRAPRGPPALAASEPPPRPLARARGGEGRGSDRGADGRGAAAAAGRRPP 177
Cdd:COG3321    855 GRGRRRVPLPTYPF-------QREDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALA 927

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  178 SDERREKEGRAARLPAAAPPGTLAARSRRAGAEERAAGSGQLGAAARPGGPARTAFGGAARPGSPLPAGTRAPAGRPRPA 257
Cdd:COG3321    928 ALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAA 1007

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  258 LRRGTDRRRTGAEGRAGLRGSERAAADLRPPGRDARFSFATILPPEPKDLGFPGAARRVMGITPPDRQSASFMVGTTTAA 337
Cdd:COG3321   1008 AALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALA 1087

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  338 SRGLAFLSLARPRARHAAGRGSAGADPPPKPARPAGRRLGRAAPPDVLEETATRRGGRGPVPEAPSAGAARSAAGGGAAT 417
Cdd:COG3321   1088 AALAAAALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAAL 1167

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  418 RCALRRYLRAGGASPRAFFFPPFSLSPLSGSPSRLRPHRRPALLAAGTHGRHPDPGRHRHLACFYPRTPEKLAGPRGRHT 497
Cdd:COG3321   1168 LAAAALLLALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAA 1247

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  498 ARYGEEAPPRREGRHLACHGKPTGRGDRPARTPASAAPLGRPRRSAGPPGALSHASRKASSIVTRGTAPRPLSLSLPLRG 577
Cdd:COG3321   1248 LAAAAAALLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLA 1327

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*....
gi 2720991447  578 GRHVPQAADAGGPHATLHGSLPARQEAGAAGRPAPDNPRFRPRRAHGRP 626
Cdd:COG3321   1328 AALAALAAAVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAAL 1376
PHA03247 PHA03247
large tegument protein UL36; Provisional
 748-1146 1.30e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 1.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  748 TEKKGREGAPLRPQPGPRPTDLRGTQPSGSQAGGAGPTARAARPPWLSRRPKRREGRGAAASPAnghrASPGLPGDSVGF 827
Cdd:PHA03247  2583 TSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV----PPPERPRDDPAP 2658

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  828 SVCRRGRRPQPGRPAPPPSARWAGPRlraeeggtnkraearrgRRLARPSGGPVTEPLRQPAGPrrgrtPTASPRHAAGT 907
Cdd:PHA03247  2659 GRVSRPRRARRLGRAAQASSPPQRPR-----------------RRAARPTVGSLTSLADPPPPP-----PTPEPAPHALV 2716

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  908 AAARQPrtgrrhPGPGHLRGSREAAGEKARAGSALRAPAANRPQQCPPPPPDDGRRLKAGPPKGRdaaASPPSHTIAFAR 987
Cdd:PHA03247  2717 SATPLP------PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP---AAGPPRRLTRPA 2787

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  988 GPRGAGSRHRLGLDAAVGPPRAPLGRPSPALPRLRFRARLSSSSPVIGPARGSRSRAPRLSRAGLPAARGVGRPVARAEG 1067
Cdd:PHA03247  2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447 1068 RAAADAEEKGPSEPALLDNPCPQYGQTRPGAAAPPKRLEAPQRGGAREQAASRLDLTGGGARQ---RPLGRLPGPAATTG 1144
Cdd:PHA03247  2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQpppPPPPRPQPPLAPTT 2947


                   ..
gi 2720991447 1145 LP 1146
Cdd:PHA03247  2948 DP 2949
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
89-339 3.56e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.31  E-value: 3.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   89 GPAAGGGSEEPPPRKAPS----RPPPFAFSLSAVARRAPTAPLAPRAPRGPPALAASEPPPRPLARARGGEGRGSDRGAD 164
Cdd:PRK07003   365 GGAPGGGVPARVAGAVPApgarAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAAD 444

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  165 GRGAAAAAGRRPPSDERREKEGRAARLPAAAPPGTLAARSRRAGAEERAAGSGQLGAAARPGGPARTAFGGAARPGSPLP 244
Cdd:PRK07003   445 GDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAA 524

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  245 AGTRAPAGR-PRPALRRGTDRRRTGAEGRAGLRGseraaADLRPPGRDARFSFATILPPEPKDLGFPGAARRVMGITPPD 323
Cdd:PRK07003   525 AAPPAPEARpPTPAAAAPAARAGGAAAALDVLRN-----AGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTP 599

                          250
                   ....*....|....*.
gi 2720991447  324 RQSASFMVGTTTAASR 339
Cdd:PRK07003   600 RARAATGDAPPNGAAR 615
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 63-147 1.47e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 46.22  E-value: 1.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   63 RPANGARPAR--GPERPaRALALPRRPcgpaagggsEEPPPRKAPSRPPPfafslsavarraPTAPLAPRAPRGPPALAA 140
Cdd:PTZ00449   599 RPRSAQRPTRpkSPKLP-ELLDIPKSP---------KRPESPKSPKRPPP------------PQRPSSPERPEGPKIIKS 656


                   ....*..
gi 2720991447  141 SEPPPRP 147
Cdd:PTZ00449   657 PKPPKSP 663
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 62-185 2.80e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.09  E-value: 2.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   62 GRPANGARPARGPERPARALALPRRPCGPAAGGGSEEPPPRKAPSRPPPFAFSLSAVARRAPTAPLAPRAPRGPPALAAS 141
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALA 448

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2720991447  142 EPPPRPLARARGGEGRGSDRGADGRGAAAAAGRRPPSDERREKE 185
Cdd:PRK14951   449 PAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 34-418 7.19e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.82  E-value: 7.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   34 SGTGVSLSSPAPPPRGRLRLGPPRRRGDGRPANGARPARGPERPARALALPRRPCGPAAGGGSEEPPPRKAPSRPPPFAF 113
Cdd:PRK07764   383 RRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP 462

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  114 SLSAVARRAPTAPLAPRAPRGPPALAASEPPPRPLARArgGEGRGSDRGADGRGAAAAAGRRPPSDERREKEGRAARLPA 193
Cdd:PRK07764   463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP--AAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPEATV 540

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  194 AAPPGT----------LAARSRRAGAEE--RAAGSGQLGAAARPGGPARTAFGGAARPGSPLPAGTRAPAGRPRPALRRG 261
Cdd:PRK07764   541 LGVRGDtlvlgfstggLARRFASPGNAEvlVTALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAA 620

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  262 TDRRRTGAEGRAGLRGSERAAADLRPPGRDARFSFATILPPEPKDLGFPGAARRVMGITPPDRQSASFMVGTTTAASRGL 341
Cdd:PRK07764   621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  342 AflsLARPRARHAAGRGSAGADPPPKPARPAGRRLGRAA-----PPDVLEETATRRGGRGPVPEAPSAGAARSAAGGGAA 416
Cdd:PRK07764   701 P---APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADdpvplPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777


                   ..
gi 2720991447  417 TR 418
Cdd:PRK07764   778 PP 779
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
 25-556 1.30e-03

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 43.32  E-value: 1.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   25 PpppppppgsgtgVSLSS-----PAPPPRGRLRLGPPRRRGDGRPANGARPARGPERPARALALPRRPCGPAAGGGSEEP 99
Cdd:COG3321    860 R------------VPLPTypfqrEDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALA 927

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  100 PPRKAPSRPPPFAFSLSAVARRAPTAPLAPRAPRGPPALAASEPPPRPLARARGGEGRGSDRGADGRGAAAAAGRRPPSD 179
Cdd:COG3321    928 ALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAA 1007

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  180 ERREKEGRAARLPAAAPPGTLAARSRRAGAEERAAGSGQLGAAARPGGPARTAFGGAARPGSPLPAGTRAPAGRPRPALR 259
Cdd:COG3321   1008 AALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALA 1087

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  260 RGTDRRRTGAEGRAGLRGSERAAADLRPPGRDARFSFATILPPEPKDLGFPGAARRVMGITPPDRQSASFMVGTTTAASR 339
Cdd:COG3321   1088 AALAAAALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAAL 1167

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  340 GLAFLSLARPRARHAAGRGSAGADPPPKPARPAGRRLGRAAPPDVLEETATRRGGRGPVPEAPSAGAARSAAGGGAATRC 419
Cdd:COG3321   1168 LAAAALLLALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAA 1247

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  420 ALRRYLRAGGASPRAFFFPPFSLSPLSGSPSRLRPHRRPALLAAGTHGRHPDPGRHRHLACFYPRTPEKLAGPRGRHTAR 499
Cdd:COG3321   1248 LAAAAAALLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLA 1327

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2720991447  500 YGEEAPPRREGRHLACHGKPTGRGDRPARTPASAAPLGRPRRSAGPPGALSHASRKA 556
Cdd:COG3321   1328 AALAALAAAVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAALALAALAAA 1384
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
64-255 4.60e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 4.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   64 PANGARPARGPERPAR-ALALPRRPCGPAAGGGSEEPPPRKAPSRPPPFAFSLSAV----------ARRAPTAPLAPRAP 132
Cdd:PRK12323   381 PVAQPAPAAAAPAAAApAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAArqasargpggAPAPAPAPAAAPAA 460

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  133 RGPPALAASEPPPRPLARArggegrgSDRGADGRGAAAAAGRRPPSDERREK--EGRAARLPAAAPPGTLAARSRRAGAE 210
Cdd:PRK12323   461 AARPAAAGPRPVAAAAAAA-------PARAAPAAAPAPADDDPPPWEELPPEfaSPAPAQPDAAPAGWVAESIPDPATAD 533

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 2720991447  211 ERAAGSGQLGAAARPGGPArtafggAARPGSPLPAGTRAPAGRPR 255
Cdd:PRK12323   534 PDDAFETLAPAPAAAPAPR------AAAATEPVVAPRPPRASASG 572
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 864-1085 5.90e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 5.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  864 RAEARRGRRLARPSGGPVTEPLRQPAGPRRGRTPTASPRHAAGTAAARQPRTGRRHPGPGHLRGSREAAGEKARAGSALR 943
Cdd:PRK07764   592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPA 671

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  944 APAANRPQQCPPPPPDDGRRLKAGPPKGRDAAASPPSHTIAFARGPRGAGSRHRLGldAAVGPPRAPLGRPSPALPRlrf 1023
Cdd:PRK07764   672 KAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG--ASAPSPAADDPVPLPPEPD--- 746

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2720991447 1024 rarlssssPVIGPARGSRSRAPRLSRAGLPAARGVGRPVARAEGRAAADAEEKGPSEPALLD 1085
Cdd:PRK07764   747 --------DPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRD 800
PHA03247 PHA03247
large tegument protein UL36; Provisional
 35-399 6.57e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 6.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447   35 GTGVSLSSPAPPPRGRLRLGPPRRRGDGRPANGARPARGPERPARALA-----LPRRPCGPAAGGGSEEPPPRKAPSRPP 109
Cdd:PHA03247  2610 GPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPApgrvsRPRRARRLGRAAQASSPPQRPRRRAAR 2689

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  110 PFAFSLSAVARraPTAPLAPRAPRGPPALAASEPPPRPLArarggeGRGSDRGADGRGAAAAAGRRPPSDerrekegraa 189
Cdd:PHA03247  2690 PTVGSLTSLAD--PPPPPPTPEPAPHALVSATPLPPGPAA------ARQASPALPAAPAPPAVPAGPATP---------- 2751

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  190 rlpaaappgtlaarsrragAEERAAGSGQLGAAARPGGPARTAFGGAARPGSPLPAGTRAPAGRPRPALRRGTDRRRTGA 269
Cdd:PHA03247  2752 -------------------GGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVL 2812

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  270 EGRAGLRGSERAAADLRPPGRDARFSFATILPPEPKDLGFPGAarrVMGITPPDRQSASFMVGTTTAASRGLAFLSLARP 349
Cdd:PHA03247  2813 APAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGS---VAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARP 2889

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2720991447  350 ---RARHAAGRGSAGADPPPKPARPAGRRLGRAAPPDVLEETATRRGGRGPVP 399
Cdd:PHA03247  2890 avsRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 752-1102 7.60e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.54  E-value: 7.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  752 GREGAPLRPQPGPRPTDLRGTQPSGSQAGGAGPTARAARPPWLSRRPKRREGRGAAASPANGHRASPGLPGDSVGFSVCR 831
Cdd:PHA03307    94 TLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAA 173

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  832 RGRRPQPGRPAPPPSARWAGPRLRAEEGGTnkRAEARRGRRLARPSGGPVTEPLRQPAGPRRGRTPTASPRHAAGTAAAR 911
Cdd:PHA03307   174 LPLSSPEETARAPSSPPAEPPPSTPPAAAS--PRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGP 251

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  912 QPRTGRRHPGPGHLRGSREAA----GEKARAGSALRAPAANRPQQCPPPPPDDGRRLKAGPPKGRDAAASPPSHTIAFAR 987
Cdd:PHA03307   252 ENECPLPRPAPITLPTRIWEAsgwnGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSS 331

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720991447  988 GPRGAGSRhrlglDAAVGPPRAPLGRPSPALPRLRFRARLSSSSPVIGPARGSRSRAPRLSRAGLPAARGVGRPVARAEG 1067
Cdd:PHA03307   332 SSESSRGA-----AVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGR 406

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 2720991447 1068 RAAADAEEKGPSEPALLDNPCPQY------GQTRPGAAAPP 1102
Cdd:PHA03307   407 FPAGRPRPSPLDAGAASGAFYARYplltpsGEPWPGSPPPP 447
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH