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Conserved domains on  [gi|2462547941|ref|XP_054235779|]
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NLR family CARD domain-containing protein 3 isoform X3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RNA1 super family cl34950
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
573-890 3.22e-60

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


The actual alignment was detected with superfamily member COG5238:

Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 211.57  E-value: 3.22e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 573 ELQHTELARSVEEAMES---GALARLTGPAHRAALAylLQVSDACAQEANLSLSLSQGV---LQSLLPQLLYCRKLRLDT 646
Cdd:COG5238    83 EAFPTQLLVVDWEGAEEvspVALAETATAVATPPPD--LRRIMAKTLEDSLILYLALPRrinLIQVLKDPLGGNAVHLLG 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 647 NQFQDPVMELLGSVLSGKDCRIQKISLAENQISNKGAKALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTS 726
Cdd:COG5238   161 LAARLGLLAAISMAKALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTT 240
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 727 LSLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALAEALKVNQ 806
Cdd:COG5238   241 LDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNK 320
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 807 GLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSISPEGAQAIAHALCANSTLKNLDLTANLLHDQGARAIAVAV 886
Cdd:COG5238   321 TLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDAL 400

                  ....
gi 2462547941 887 RENR 890
Cdd:COG5238   401 QTNR 404
NACHT pfam05729
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ...
139-305 9.97e-45

NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.


:

Pssm-ID: 428606 [Multi-domain]  Cd Length: 166  Bit Score: 158.62  E-value: 9.97e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 139 RVSITIGVAGMGKTTLVRHFVRLWAHGQVGKDFSLVLPLTFRDLNTHEK-LCADRLICSVFPHVGEPSLAV-----AVPA 212
Cdd:pfam05729   1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGFDFVFFLPCRELSRSGNaRSLADLLFSQWPEPAAPVSEVwavilELPE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 213 RALLILDGLDECRTPLDFSNTvactdpkkEIPVDHLITNIIRGNLFPEVSIWITSRPSASGQIPGGLVD-RMTEIRGFNE 291
Cdd:pfam05729  81 RLLLILDGLDELVSDLGQLDG--------PCPVLTLLSSLLRKKLLPGASLLLTVRPDALRDLRRGLEEpRYLEVRGFSE 152
                         170
                  ....*....|....
gi 2462547941 292 EEIKVCLEQMFPED 305
Cdd:pfam05729 153 SDRKQYVRKYFSDE 166
NLRC4_HD2 pfam17776
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ...
455-582 4.28e-18

NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.


:

Pssm-ID: 465499 [Multi-domain]  Cd Length: 122  Bit Score: 80.80  E-value: 4.28e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 455 HLSLQEFVAAAYYYGASRRAIFDLFTESGVSWPRLGFlthfRSAAQRAMQAEDGRLDVFLRFLSGLLSPRVNALLAGSL- 533
Cdd:pfam17776   1 HLSFQEFFAALFYVLSFKEEKSNPLKEFFGLRKRESL----KSLLDKALKSKNGHLDLFLRFLFGLLNEENQRLLEGLLg 76
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2462547941 534 --LAQGEHQAYRTQVAELLQGCLRPDaavcaRAINVLHCLHELQHTELARS 582
Cdd:pfam17776  77 ckLSSEIKQELLQWIKSLIQKELSSE-----RFLNLFHCLYELQDESFVKE 122
NOD2_WH pfam17779
NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular ...
395-453 6.07e-11

NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular function is not known.


:

Pssm-ID: 465501  Cd Length: 57  Bit Score: 58.35  E-value: 6.07e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2462547941 395 KMVGTLGRLAFHGLLKKKYVFYEQDMKAFGVDLALLQGAPCSCFLQREETLASsvAYCF 453
Cdd:pfam17779   1 KLLLKLGKLAFEGLWKKKLVFSEEDLKEYGLDESDLSSGLLTEILQKDLGCEK--VYSF 57
 
Name Accession Description Interval E-value
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
573-890 3.22e-60

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 211.57  E-value: 3.22e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 573 ELQHTELARSVEEAMES---GALARLTGPAHRAALAylLQVSDACAQEANLSLSLSQGV---LQSLLPQLLYCRKLRLDT 646
Cdd:COG5238    83 EAFPTQLLVVDWEGAEEvspVALAETATAVATPPPD--LRRIMAKTLEDSLILYLALPRrinLIQVLKDPLGGNAVHLLG 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 647 NQFQDPVMELLGSVLSGKDCRIQKISLAENQISNKGAKALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTS 726
Cdd:COG5238   161 LAARLGLLAAISMAKALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTT 240
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 727 LSLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALAEALKVNQ 806
Cdd:COG5238   241 LDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNK 320
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 807 GLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSISPEGAQAIAHALCANSTLKNLDLTANLLHDQGARAIAVAV 886
Cdd:COG5238   321 TLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDAL 400

                  ....
gi 2462547941 887 RENR 890
Cdd:COG5238   401 QTNR 404
NACHT pfam05729
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ...
139-305 9.97e-45

NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.


Pssm-ID: 428606 [Multi-domain]  Cd Length: 166  Bit Score: 158.62  E-value: 9.97e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 139 RVSITIGVAGMGKTTLVRHFVRLWAHGQVGKDFSLVLPLTFRDLNTHEK-LCADRLICSVFPHVGEPSLAV-----AVPA 212
Cdd:pfam05729   1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGFDFVFFLPCRELSRSGNaRSLADLLFSQWPEPAAPVSEVwavilELPE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 213 RALLILDGLDECRTPLDFSNTvactdpkkEIPVDHLITNIIRGNLFPEVSIWITSRPSASGQIPGGLVD-RMTEIRGFNE 291
Cdd:pfam05729  81 RLLLILDGLDELVSDLGQLDG--------PCPVLTLLSSLLRKKLLPGASLLLTVRPDALRDLRRGLEEpRYLEVRGFSE 152
                         170
                  ....*....|....
gi 2462547941 292 EEIKVCLEQMFPED 305
Cdd:pfam05729 153 SDRKQYVRKYFSDE 166
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
657-890 8.38e-37

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 141.34  E-value: 8.38e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 657 LGSVLSG--KDCRIQKISLAENQISNKGAKALArSLLVNRSLTSLDLRGNSIGPQGAKALADALKINR-TLTSLSLQGNT 733
Cdd:cd00116    70 LQSLLQGltKGCGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPpALEKLVLGRNR 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 734 VRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALAEALKVNQGLESLDL 813
Cdd:cd00116   149 LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462547941 814 QSNSISDAGVAALMGAL-CTNQTLLSLSLRENSISPEGAQAIAHALCANSTLKNLDLTANLLHDQGARAIAVAVRENR 890
Cdd:cd00116   229 GDNNLTDAGAAALASALlSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPG 306
NLRC4_HD2 pfam17776
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ...
455-582 4.28e-18

NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.


Pssm-ID: 465499 [Multi-domain]  Cd Length: 122  Bit Score: 80.80  E-value: 4.28e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 455 HLSLQEFVAAAYYYGASRRAIFDLFTESGVSWPRLGFlthfRSAAQRAMQAEDGRLDVFLRFLSGLLSPRVNALLAGSL- 533
Cdd:pfam17776   1 HLSFQEFFAALFYVLSFKEEKSNPLKEFFGLRKRESL----KSLLDKALKSKNGHLDLFLRFLFGLLNEENQRLLEGLLg 76
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2462547941 534 --LAQGEHQAYRTQVAELLQGCLRPDaavcaRAINVLHCLHELQHTELARS 582
Cdd:pfam17776  77 ckLSSEIKQELLQWIKSLIQKELSSE-----RFLNLFHCLYELQDESFVKE 122
NOD2_WH pfam17779
NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular ...
395-453 6.07e-11

NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular function is not known.


Pssm-ID: 465501  Cd Length: 57  Bit Score: 58.35  E-value: 6.07e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2462547941 395 KMVGTLGRLAFHGLLKKKYVFYEQDMKAFGVDLALLQGAPCSCFLQREETLASsvAYCF 453
Cdd:pfam17779   1 KLLLKLGKLAFEGLWKKKLVFSEEDLKEYGLDESDLSSGLLTEILQKDLGCEK--VYSF 57
LRR_RI smart00368
Leucine rich repeat, ribonuclease inhibitor type;
693-719 2.26e-04

Leucine rich repeat, ribonuclease inhibitor type;


Pssm-ID: 197686 [Multi-domain]  Cd Length: 28  Bit Score: 38.93  E-value: 2.26e-04
                           10        20
                   ....*....|....*....|....*..
gi 2462547941  693 NRSLTSLDLRGNSIGPQGAKALADALK 719
Cdd:smart00368   1 NPSLRELDLSNNKLGDEGARALAEALK 27
LRR_6 pfam13516
Leucine Rich repeat;
692-715 6.98e-04

Leucine Rich repeat;


Pssm-ID: 463907 [Multi-domain]  Cd Length: 24  Bit Score: 37.60  E-value: 6.98e-04
                          10        20
                  ....*....|....*....|....
gi 2462547941 692 VNRSLTSLDLRGNSIGPQGAKALA 715
Cdd:pfam13516   1 SNTHLTTLDLSDNDIGDEGAEALA 24
 
Name Accession Description Interval E-value
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
573-890 3.22e-60

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 211.57  E-value: 3.22e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 573 ELQHTELARSVEEAMES---GALARLTGPAHRAALAylLQVSDACAQEANLSLSLSQGV---LQSLLPQLLYCRKLRLDT 646
Cdd:COG5238    83 EAFPTQLLVVDWEGAEEvspVALAETATAVATPPPD--LRRIMAKTLEDSLILYLALPRrinLIQVLKDPLGGNAVHLLG 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 647 NQFQDPVMELLGSVLSGKDCRIQKISLAENQISNKGAKALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTS 726
Cdd:COG5238   161 LAARLGLLAAISMAKALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTT 240
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 727 LSLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALAEALKVNQ 806
Cdd:COG5238   241 LDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNK 320
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 807 GLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSISPEGAQAIAHALCANSTLKNLDLTANLLHDQGARAIAVAV 886
Cdd:COG5238   321 TLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDAL 400

                  ....
gi 2462547941 887 RENR 890
Cdd:COG5238   401 QTNR 404
NACHT pfam05729
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ...
139-305 9.97e-45

NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.


Pssm-ID: 428606 [Multi-domain]  Cd Length: 166  Bit Score: 158.62  E-value: 9.97e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 139 RVSITIGVAGMGKTTLVRHFVRLWAHGQVGKDFSLVLPLTFRDLNTHEK-LCADRLICSVFPHVGEPSLAV-----AVPA 212
Cdd:pfam05729   1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQGFDFVFFLPCRELSRSGNaRSLADLLFSQWPEPAAPVSEVwavilELPE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 213 RALLILDGLDECRTPLDFSNTvactdpkkEIPVDHLITNIIRGNLFPEVSIWITSRPSASGQIPGGLVD-RMTEIRGFNE 291
Cdd:pfam05729  81 RLLLILDGLDELVSDLGQLDG--------PCPVLTLLSSLLRKKLLPGASLLLTVRPDALRDLRRGLEEpRYLEVRGFSE 152
                         170
                  ....*....|....
gi 2462547941 292 EEIKVCLEQMFPED 305
Cdd:pfam05729 153 SDRKQYVRKYFSDE 166
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
657-890 8.38e-37

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 141.34  E-value: 8.38e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 657 LGSVLSG--KDCRIQKISLAENQISNKGAKALArSLLVNRSLTSLDLRGNSIGPQGAKALADALKINR-TLTSLSLQGNT 733
Cdd:cd00116    70 LQSLLQGltKGCGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPpALEKLVLGRNR 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 734 VRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALAEALKVNQGLESLDL 813
Cdd:cd00116   149 LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462547941 814 QSNSISDAGVAALMGAL-CTNQTLLSLSLRENSISPEGAQAIAHALCANSTLKNLDLTANLLHDQGARAIAVAVRENR 890
Cdd:cd00116   229 GDNNLTDAGAAALASALlSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPG 306
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
615-862 6.92e-35

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 135.56  E-value: 6.92e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 615 AQEANLSLSLSQG---VLQSLLPQLLYC---RKLRLDTNQFQDPVMELLGSVLSGKDcrIQKISLAENQISNKGAKALAR 688
Cdd:cd00116    53 LKELCLSLNETGRiprGLQSLLQGLTKGcglQELDLSDNALGPDGCGVLESLLRSSS--LQELKLNNNGLGDRGLRLLAK 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 689 SLL-VNRSLTSLDLRGNSIGPQGAKALADALKINRTLTSLSLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGA 767
Cdd:cd00116   131 GLKdLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 768 QRMADALKQNRSLKELMFSSNSIGDGGAKALAEALK-VNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSI 846
Cdd:cd00116   211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLsPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290
                         250
                  ....*....|....*.
gi 2462547941 847 SPEGAQAIAHALCANS 862
Cdd:cd00116   291 GEEGAQLLAESLLEPG 306
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
622-895 1.55e-33

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 131.71  E-value: 1.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 622 LSLSQGVLQSLLPQLLYCRKLRLDTNQFQDPVMELLGSVL-SGKDCRIQKISLAENQISNKGAKALARSLLVNRSLTSLD 700
Cdd:cd00116     8 ELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALrPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 701 LRGNSIGPQGAKALADALKiNRTLTSLSLQGNTVRDDGARSMAEALASNR-TLSMLHLQKNSIGPMGAQRMADALKQNRS 779
Cdd:cd00116    88 LSDNALGPDGCGVLESLLR-SSSLQELKLNNNGLGDRGLRLLAKGLKDLPpALEKLVLGRNRLEGASCEALAKALRANRD 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 780 LKELMFSSNSIGDGGAKALAEALKVNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSISPEGAQAIAHALC 859
Cdd:cd00116   167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2462547941 860 A-NSTLKNLDLTANLLHDQGARAIAVAVRENRTLTSL 895
Cdd:cd00116   247 SpNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
634-895 4.36e-32

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 127.47  E-value: 4.36e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 634 PQLLYCRKL--RLDTNQFQDPVMELlgsvlsgkdcriQKISLAENQISNKGAKALARSLLVNRSLTSLDLRGNSIG--PQ 709
Cdd:cd00116     1 LQLSLKGELlkTERATELLPKLLCL------------QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGriPR 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 710 GAKALADALKINRTLTSLSLQGNTVRDDGARSMaEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNR-SLKELMFSSN 788
Cdd:cd00116    69 GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPpALEKLVLGRN 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 789 SIGDGGAKALAEALKVNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSISPEGAQAIAHALCANSTLKNLD 868
Cdd:cd00116   148 RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227
                         250       260
                  ....*....|....*....|....*...
gi 2462547941 869 LTANLLHDQGARAIAVAVR-ENRTLTSL 895
Cdd:cd00116   228 LGDNNLTDAGAAALASALLsPNISLLTL 255
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
622-818 7.07e-24

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 103.59  E-value: 7.07e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 622 LSLSQGVLQSLLPQLlycRKLRLDTNQFQDPVMELLGSVLSgKDCRIQKISLAENQISNKGAKALARSLLVNRSLTSLDL 701
Cdd:cd00116   125 LRLLAKGLKDLPPAL---EKLVLGRNRLEGASCEALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 702 RGNSIGPQGAKALADALKINRTLTSLSLQGNTVRDDGARSMAEALAS-NRTLSMLHLQKNSIGPMGAQRMADALKQNRSL 780
Cdd:cd00116   201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSpNISLLTLSLSCNDITDDGAKDLAEVLAEKESL 280
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2462547941 781 KELMFSSNSIGDGGAKALAEALKVNQG-LESLDLQSNSI 818
Cdd:cd00116   281 LELDLRGNKFGEEGAQLLAESLLEPGNeLESLWVKDDSF 319
NLRC4_HD2 pfam17776
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ...
455-582 4.28e-18

NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein.


Pssm-ID: 465499 [Multi-domain]  Cd Length: 122  Bit Score: 80.80  E-value: 4.28e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 455 HLSLQEFVAAAYYYGASRRAIFDLFTESGVSWPRLGFlthfRSAAQRAMQAEDGRLDVFLRFLSGLLSPRVNALLAGSL- 533
Cdd:pfam17776   1 HLSFQEFFAALFYVLSFKEEKSNPLKEFFGLRKRESL----KSLLDKALKSKNGHLDLFLRFLFGLLNEENQRLLEGLLg 76
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2462547941 534 --LAQGEHQAYRTQVAELLQGCLRPDaavcaRAINVLHCLHELQHTELARS 582
Cdd:pfam17776  77 ckLSSEIKQELLQWIKSLIQKELSSE-----RFLNLFHCLYELQDESFVKE 122
NACHT COG5635
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
144-843 9.32e-18

Predicted NTPase, NACHT family domain [Signal transduction mechanisms];


Pssm-ID: 444362 [Multi-domain]  Cd Length: 935  Bit Score: 88.71  E-value: 9.32e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 144 IGVAGMGKTTLVRHFVRLWAHGQVGKDFSLVLPLTFRDLNTHEKLcaDRLICSVFPHVGEPS----LAVAVPARALLILD 219
Cdd:COG5635   186 LGEPGSGKTTLLRYLALELAERYLDAEDPIPILIELRDLAEEASL--EDLLAEALEKRGGEPedalERLLRNGRLLLLLD 263
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 220 GLDECRTPLDFSNTVactdpkkeipvdHLITNIIRGnlFPEVSIWITSRPSASGQIPGGLVDRMtEIRGFNEEEIKVCLE 299
Cdd:COG5635   264 GLDEVPDEADRDEVL------------NQLRRFLER--YPKARVIITSRPEGYDSSELEGFEVL-ELAPLSDEQIEEFLK 328
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 300 QMFPEDQALLGWMLSQVQADRALYLMCTVPAFCRLtgmaLGHLWRSRtgpqdAELwpPRTLCELYSWYFRMALSGEGQEK 379
Cdd:COG5635   329 KWFEATERKAERLLEALEENPELRELARNPLLLTL----LALLLRER-----GEL--PDTRAELYEQFVELLLERWDEQR 397
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 380 GKASPRIEQVAHggRKMVgtLGRLAFHGLLKKKYVFYEQDMKAF---------GVDLALLQGAPCSCFLQREetlaSSVA 450
Cdd:COG5635   398 GLTIYRELSREE--LREL--LSELALAMQENGRTEFAREELEEIlreylgrrkDAEALLDELLLRTGLLVER----GEGR 469
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 451 YCFTHLSLQEFVAAAYYYGASRRAIFDLFTEsgvSWPRLGFLTHFRSAAQRAmqaedGRLDVFLRFLSGLLSPRVNALLA 530
Cdd:COG5635   470 YSFAHRSFQEYLAARALVEELDEELLELLAE---HLEDPRWREVLLLLAGLL-----DDVKQIKELIDALLARDDAAALA 541
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 531 GSLLAQGEHQAyrtqvAELLQGCLRPDAAVCARAINVLHCLHELQHTELARSVEEAMESGALARLTGPAHRAALAYLLQV 610
Cdd:COG5635   542 LAAALLLALLL-----ALALLALLALLLLLRLLLALLALLLLALLLLLLLALLLALLALDLGLAALLLLLLLLLLLLLLL 616
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 611 SDACAQEANLSLSLSQGVLQSLLPQLLYCRKLRLDTNQFQDPVMELLGSVLSGKDCRIQKISLAENQISNKGAKALARSL 690
Cdd:COG5635   617 ALALLLALLLLLLLLLLAELLLLALLALVLLSLLLASRLLLITLLLLAAASAALLLLLLLLLAELLLALLALASLLLLLL 696
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 691 LVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTSLSLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRM 770
Cdd:COG5635   697 LALALALALLLLAVLLAAALDLLLLLVLLLALLLVLALALSLLLLALALLLAGALLLESSALLAVLLASLLLALLLLSLL 776
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462547941 771 ADALKQNRSLKELMFSSNSIGDGGAKALAEALKVNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRE 843
Cdd:COG5635   777 LLLVLLLALALLASLLLALLLLILLLVLLGSLLLLRLLDDLALLLLLALAAARLLLSSLALVALELARASLGA 849
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
621-883 1.13e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 71.12  E-value: 1.13e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 621 SLSLSQGVLQSL---LPQLLYCRKLRLDTNQFQDpvmelLGSVLSGKDcRIQKISLAENQISNkgakaLARSLLVNRSLT 697
Cdd:COG4886   117 SLDLSGNQLTDLpeeLANLTNLKELDLSNNQLTD-----LPEPLGNLT-NLKSLDLSNNQLTD-----LPEELGNLTNLK 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 698 SLDLRGNSIgpqgaKALADALKINRTLTSLSLQGNTVRDdgarsMAEALASNRTLSMLHLQKNSIGPMgaqrmaDALKQN 777
Cdd:COG4886   186 ELDLSNNQI-----TDLPEPLGNLTNLEELDLSGNQLTD-----LPEPLANLTNLETLDLSNNQLTDL------PELGNL 249
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 778 RSLKELMFSSNSIGDggakaLAEALKvNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSISPEGAQAIAHA 857
Cdd:COG4886   250 TNLEELDLSNNQLTD-----LPPLAN-LTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTL 323
                         250       260
                  ....*....|....*....|....*.
gi 2462547941 858 LCANSTLKNLDLTANLLHDQGARAIA 883
Cdd:COG4886   324 LLLLLLLKGLLVTLTTLALSLSLLAL 349
NOD2_WH pfam17779
NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular ...
395-453 6.07e-11

NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular function is not known.


Pssm-ID: 465501  Cd Length: 57  Bit Score: 58.35  E-value: 6.07e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2462547941 395 KMVGTLGRLAFHGLLKKKYVFYEQDMKAFGVDLALLQGAPCSCFLQREETLASsvAYCF 453
Cdd:pfam17779   1 KLLLKLGKLAFEGLWKKKLVFSEEDLKEYGLDESDLSSGLLTEILQKDLGCEK--VYSF 57
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
693-896 5.11e-08

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 56.34  E-value: 5.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 693 NRSLTSLDLRGNSIGPQGAKALADALKINRTLTSLSLQGNTVRDDGARSMAEALASNRTLSM-LHLQKNSIGPMGAQRMA 771
Cdd:COG5238    32 ATIVNLRSYHLHGGAILLARYLQSRSSITQYLRFEGQGDPGLNPVALEKAAEAFPTQLLVVDwEGAEEVSPVALAETATA 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 772 DALKQNRSLKELMFSSNSI-----GDGGAKALAEALKVNQGLESLDLQSNSISDAGVAAL-MGALCTNQTLLSLSLRENS 845
Cdd:COG5238   112 VATPPPDLRRIMAKTLEDSlilylALPRRINLIQVLKDPLGGNAVHLLGLAARLGLLAAIsMAKALQNNSVETVYLGCNQ 191
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2462547941 846 ISPEGAQAIAHALCANSTLKNLDLTANLLHDQGARAIAVAVRENRTLTSLQ 896
Cdd:COG5238   192 IGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLD 242
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
619-896 1.50e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 54.94  E-value: 1.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 619 NL-SLSLSQGVLQSLLPQLLYCRKLR---LDTNQFQDpvmelLGSVLSGKDcRIQKISLAENQISNkgakaLARSLLVNR 694
Cdd:COG4886   137 NLkELDLSNNQLTDLPEPLGNLTNLKsldLSNNQLTD-----LPEELGNLT-NLKELDLSNNQITD-----LPEPLGNLT 205
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 695 SLTSLDLRGNSIgpqgaKALADALKINRTLTSLSLQGNTVRDdgarsmAEALASNRTLSMLHLQKNSIgpmgaqRMADAL 774
Cdd:COG4886   206 NLEELDLSGNQL-----TDLPEPLANLTNLETLDLSNNQLTD------LPELGNLTNLEELDLSNNQL------TDLPPL 268
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 775 KQNRSLKELMFSSNSIGDGGAKALAEALKVNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSISPEGAQAI 854
Cdd:COG4886   269 ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLA 348
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2462547941 855 AHALCANSTLKNLDLTANLLHDQGARAIAVAVRENRTLTSLQ 896
Cdd:COG4886   349 LLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLL 390
LRR_RI smart00368
Leucine rich repeat, ribonuclease inhibitor type;
693-719 2.26e-04

Leucine rich repeat, ribonuclease inhibitor type;


Pssm-ID: 197686 [Multi-domain]  Cd Length: 28  Bit Score: 38.93  E-value: 2.26e-04
                           10        20
                   ....*....|....*....|....*..
gi 2462547941  693 NRSLTSLDLRGNSIGPQGAKALADALK 719
Cdd:smart00368   1 NPSLRELDLSNNKLGDEGARALAEALK 27
LRR_6 pfam13516
Leucine Rich repeat;
692-715 6.98e-04

Leucine Rich repeat;


Pssm-ID: 463907 [Multi-domain]  Cd Length: 24  Bit Score: 37.60  E-value: 6.98e-04
                          10        20
                  ....*....|....*....|....
gi 2462547941 692 VNRSLTSLDLRGNSIGPQGAKALA 715
Cdd:pfam13516   1 SNTHLTTLDLSDNDIGDEGAEALA 24
LRR_RI smart00368
Leucine rich repeat, ribonuclease inhibitor type;
777-803 9.76e-04

Leucine rich repeat, ribonuclease inhibitor type;


Pssm-ID: 197686 [Multi-domain]  Cd Length: 28  Bit Score: 37.39  E-value: 9.76e-04
                           10        20
                   ....*....|....*....|....*..
gi 2462547941  777 NRSLKELMFSSNSIGDGGAKALAEALK 803
Cdd:smart00368   1 NPSLRELDLSNNKLGDEGARALAEALK 27
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
619-843 2.70e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 41.07  E-value: 2.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 619 NLSLSLSQgvlqslLPQLlycRKLRLDTNQFQDpvmelLGSVLSGKDcRIQKISLAENQISNkgakalARSLLVNRSLTS 698
Cdd:COG4886   196 DLPEPLGN------LTNL---EELDLSGNQLTD-----LPEPLANLT-NLETLDLSNNQLTD------LPELGNLTNLEE 254
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462547941 699 LDLRGNSIgpqgaKALADALKINRtLTSLSLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNR 778
Cdd:COG4886   255 LDLSNNQL-----TDLPPLANLTN-LKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLL 328
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462547941 779 SLKELMFSSNSIGDGGAKALAEALKVNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRE 843
Cdd:COG4886   329 LLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLL 393
LRR_RI smart00368
Leucine rich repeat, ribonuclease inhibitor type;
721-748 5.51e-03

Leucine rich repeat, ribonuclease inhibitor type;


Pssm-ID: 197686 [Multi-domain]  Cd Length: 28  Bit Score: 35.08  E-value: 5.51e-03
                           10        20
                   ....*....|....*....|....*...
gi 2462547941  721 NRTLTSLSLQGNTVRDDGARSMAEALAS 748
Cdd:smart00368   1 NPSLRELDLSNNKLGDEGARALAEALKD 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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