|
Name |
Accession |
Description |
Interval |
E-value |
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
615-1257 |
2.89e-48 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 188.07 E-value: 2.89e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 615 QKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMERE 694
Cdd:pfam01576 406 KRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKL 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 695 QHQTEIRDLQDQ---LSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEV 771
Cdd:pfam01576 486 NLSTRLRQLEDErnsLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKA 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 772 SSHDQeMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQ 851
Cdd:pfam01576 566 AAYDK-LEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARA 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 852 IEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLS------QTTQEQK--------- 916
Cdd:pfam01576 645 LEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEeledelQATEDAKlrlevnmqa 724
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 917 ---QLSEKLKEESEQKE--------QLRRLKNEMENERWHLG------KTIEKLQKEMADIVEASRTSTLE-------LQ 972
Cdd:pfam01576 725 lkaQFERDLQARDEQGEekrrqlvkQVRELEAELEDERKQRAqavaakKKLELDLKELEAQIDAANKGREEavkqlkkLQ 804
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 973 NQLDEYKeknrRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDleyELEAK 1052
Cdd:pfam01576 805 AQMKDLQ----RELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIAS---GASGK 877
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1053 SHLKDDRSRLvkqmEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSR 1132
Cdd:pfam01576 878 SALQDEKRRL----EARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAK 953
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1133 IIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHL---SLTDQKDQLSLRLK 1209
Cdd:pfam01576 954 LQEMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRhadQYKDQAEKGNSRMK 1033
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 2462546316 1210 AMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDL 1257
Cdd:pfam01576 1034 QLKRQLEEAEEEASRANAARRKLQRELDDATESNESMNREVSTLKSKL 1081
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
609-1238 |
4.30e-32 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 136.07 E-value: 4.30e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 609 VKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQ 688
Cdd:pfam01576 175 AKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 689 VKMEREQHQTEIRDLQDQLSEMHDELDS---AKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKG 765
Cdd:pfam01576 255 ETAQKNNALKKIRELEAQISELQEDLESeraARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 ALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRV 845
Cdd:pfam01576 335 ALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 846 AQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEE 925
Cdd:pfam01576 415 QELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 926 SEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQnQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRL 1005
Cdd:pfam01576 495 EDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLE-ALEEGKKRLQRELEALTQQLEEKAAAYDKLEK 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1006 TAMKMQDEMRLMEEELrDYQRAQDEALTKRQllEQTLKDLEYELEAKSHLKDDRSRL---VKQMEDKVSQLEMELEEERN 1082
Cdd:pfam01576 574 TKNRLQQELDDLLVDL-DHQRQLVSNLEKKQ--KKFDQMLAEEKAISARYAEERDRAeaeAREKETRALSLARALEEALE 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1083 NSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEG---LVVQMEARIAELE 1159
Cdd:pfam01576 651 AKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAklrLEVNMQALKAQFE 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1160 DRLESeeRDRANlQLSNRRLERKVKELVMQVDDEHLSLTD---QKDQLSLRLKAMKRQV-------EEAEEEIDRLESSK 1229
Cdd:pfam01576 731 RDLQA--RDEQG-EEKRRQLVKQVRELEAELEDERKQRAQavaAKKKLELDLKELEAQIdaankgrEEAVKQLKKLQAQM 807
|
....*....
gi 2462546316 1230 KKLQRELEE 1238
Cdd:pfam01576 808 KDLQRELEE 816
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
611-1261 |
2.54e-31 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 133.64 E-value: 2.54e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 611 DLLEQKSKLTIEVAELQRQL-----QLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEE 685
Cdd:TIGR02168 203 KSLERQAEKAERYKELKAELrelelALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 686 LFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDReKGALIEELLQAKQDLQDLLIAKEEQEDLLRKrerELTALKG 765
Cdd:TIGR02168 283 IEELQKELYALANEISRLEQQKQILRERLANLERQLEE-LEAQLEELESKLDELAEELAELEEKLEELKE---ELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 ALKEEVSSHdQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQ-----GRSEE 840
Cdd:TIGR02168 359 ELEELEAEL-EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLkkleeAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 841 LERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQG----------NLSQ 910
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfsegvkallkNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 911 TTQEQKQLSEKLKEESEQKEQL------RRLKNEMENE----------------RWHL-------GKTIEKLQKEMADIV 961
Cdd:TIGR02168 518 LSGILGVLSELISVDEGYEAAIeaalggRLQAVVVENLnaakkaiaflkqnelgRVTFlpldsikGTEIQGNDREILKNI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 962 EASRTSTLELQNQLDEYKE------------KNRRELAEMQRQLKEK----TLEAE----------KSRLTAMKMQD--- 1012
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKalsyllggvlvvDDLDNALELAKKLRPGyrivTLDGDlvrpggvitgGSAKTNSSILErrr 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1013 EMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERIS 1092
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1093 RSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYrSSKEGLVVQMEARIAELEDRLESEERDRANL 1172
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEEAANLRERLESLERRIAAT 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1173 QLSNRRLERKVKELVMQV-----------------DDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRE 1235
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIeslaaeieeleelieelESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
730 740
....*....|....*....|....*.
gi 2462546316 1236 LEEQMDMNEHLQGQLNSMKKDLSRLK 1261
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLQ 942
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
608-1240 |
1.43e-29 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 127.75 E-value: 1.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 608 EVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEelf 687
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE--- 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 688 qvkmereqhqtEIRDLQDQLSEMHDELDsakrsedrekgALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGAL 767
Cdd:COG1196 310 -----------RRRELEERLEELEEELA-----------ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 768 KEEVSSHDQEMDKLKEQYDAELQALRESVEEatknvevlasrsntsEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQ 847
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAEL---------------AAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 848 LQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKE--E 925
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 926 SEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRL 1005
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1006 TAMKMQDEMRLMEEELRD----YQRAQDEALTKRQLLEQ------TLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEM 1075
Cdd:COG1196 593 ARGAIGAAVDLVASDLREadarYYVLGDTLLGRTLVAARleaalrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1076 ELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARI 1155
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1156 AELEDRLESEERDRANLqlsnRRLERKVKEL--V-MQVDDEHlsltdqkDQLSLRLKAMKRQVEEAEEEIDRLEsskkKL 1232
Cdd:COG1196 753 LEELPEPPDLEELEREL----ERLEREIEALgpVnLLAIEEY-------EELEERYDFLSEQREDLEEARETLE----EA 817
|
....*...
gi 2462546316 1233 QRELEEQM 1240
Cdd:COG1196 818 IEEIDRET 825
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
660-1263 |
2.16e-27 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 120.81 E-value: 2.16e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 660 EKVEENSTlqqRLEESEGELRKNLEELfqvkmEREQHQTEI-RDLQDQLsemhdeldsakrsEDREKGALIEELLQAKQD 738
Cdd:COG1196 182 EATEENLE---RLEDILGELERQLEPL-----ERQAEKAERyRELKEEL-------------KELEAELLLLKLRELEAE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 739 LQDLLIAKEEQEDLLRKRERELTALkgalkeevsshdqemdklkeqyDAELQALRESVEEATKNVEVLASRSNTSEQDQA 818
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAEL----------------------EAELEELRLELEELELELEEAQAEEYELLAELA 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 819 GTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALE 898
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 899 NELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENErwhlgktieklQKEMADIVEASRTSTLELQNQLDEY 978
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE-----------LEELEEALAELEEEEEEEEEALEEA 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 979 KEKNRRELAEmQRQLKEKTLEAEKSRLTAmkmqdemrlmEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEA-KSHLKD 1057
Cdd:COG1196 448 AEEEAELEEE-EEALLELLAELLEEAALL----------EAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAALLL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1058 DRSRLVKQMEDKVSQLEMELEEERNNSD--LLSERISRSREQMEQVRNELLQERAARQD-LECDKISLERQNKDLKSRII 1134
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALaaALQNIVVEDDEVAAAAIEYLKAAKAGRATfLPLDKIRARAALAAALARGA 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1135 HLEGsyRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVmQVDDEHLSLTDQKDQLSLRLKAMKRQ 1214
Cdd:COG1196 597 IGAA--VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR-EVTLEGEGGSAGGSLTGGSRRELLAA 673
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 2462546316 1215 VEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKKL 1263
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
713-1262 |
6.15e-26 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 116.32 E-value: 6.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 713 ELDSAKRSEDREKgALIEELLQAKQDLQDLLIAKEEQEDLL-RKRERELTALKGALKEevsshdqeMDKLKEQYDAELQA 791
Cdd:TIGR02169 178 ELEEVEENIERLD-LIIDEKRQQLERLRREREKAERYQALLkEKREYEGYELLKEKEA--------LERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 792 LRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLL--------QEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAK 863
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 864 ETLKKYEGEIRQLEEALVHARKeEKEAVSAR-RALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENE 942
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERK-RRDKLTEEyAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 943 RWHLGKTIEKLQKEMADIvEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKE--KTLEAEKSRLTAMKmqDEMRLMEEE 1020
Cdd:TIGR02169 408 LDRLQEELQRLSEELADL-NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQlaADLSKYEQELYDLK--EEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1021 LRDYQRAQDEALTKRQLLEQTL---KDLEYELEAK--------SHLKDDRSRLVKQME--------------DKVSQLEM 1075
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVrggRAVEEVLKASiqgvhgtvAQLGSVGERYATAIEvaagnrlnnvvvedDAVAKEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1076 ELEEERN-------------NSDLLSERISRS------------REQMEQVRNELLQERAARQDLEC-----DKISLERQ 1125
Cdd:TIGR02169 565 ELLKRRKagratflplnkmrDERRDLSILSEDgvigfavdlvefDPKYEPAFKYVFGDTLVVEDIEAarrlmGKYRMVTL 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1126 NKDLKSRIIHLEGSYRSSKEGLVV--QMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDqkdq 1203
Cdd:TIGR02169 645 EGELFEKSGAMTGGSRAPRGGILFsrSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE---- 720
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462546316 1204 LSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKK 1262
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
575-1239 |
3.90e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 110.53 E-value: 3.90e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 575 KRKVNLVFEKIQTLKSRAAgsaQGNNQACNSTSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNikEERERMRANLEEL 654
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVA---QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEEL 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 655 RSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKR--------------- 719
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAllknqsglsgilgvl 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 720 ----SEDREKGALIEELLQAkqDLQDLLI-----AKEEQEDLLRKRERELT--ALKGALKEEVSSHDQEMDKLKEQYDAE 788
Cdd:TIGR02168 526 seliSVDEGYEAAIEAALGG--RLQAVVVenlnaAKKAIAFLKQNELGRVTflPLDSIKGTEIQGNDREILKNIEGFLGV 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEEN-----------------EKLQGRSEELERR--VAQLQ 849
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitgGSAKTNSSILERRreIEELE 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 850 RQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQK 929
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 930 EQLRRLKNEMENERWHLGKTIEKLQKEMADI---VEASRTSTLELQNQLDEYKE---KNRRELAEMQRQLKEKTLEAEKS 1003
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLkeeLKALREALDELRAELTLLNEeaaNLRERLESLERRIAATERRLEDL 843
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1004 RLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEernn 1083
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE---- 919
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1084 sdllserisrSREQMEQVRNELLQeraarqdlecdkislerqnkdLKSRIIHLEGSYRsskEGLVVQMEARIAELEDRLE 1163
Cdd:TIGR02168 920 ----------LREKLAQLELRLEG---------------------LEVRIDNLQERLS---EEYSLTLEEAEALENKIED 965
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 1164 SEERDRANLqlsnRRLERKVKELvmqvDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQ 1239
Cdd:TIGR02168 966 DEEEARRRL----KRLENKIKEL----GPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
607-1256 |
1.58e-23 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 108.23 E-value: 1.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENST------------------- 667
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLrvkekigeleaeiaslers 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 668 ---LQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAK----------RSEDREKGALIEELLQ 734
Cdd:TIGR02169 310 iaeKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKeeledlraelEEVDKEFAETRDELKD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 735 AKQDLQDLliaKEEQEDLLRKREReLTALKGALKEEVSSHDQEMDKLKE---QYDAELQALRESVEEATKNVEVLASRSN 811
Cdd:TIGR02169 390 YREKLEKL---KREINELKRELDR-LQEELQRLSEELADLNAAIAGIEAkinELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 812 TSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQL---EEALVHARKEEK 888
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvGERYATAIEVAA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 889 EAVSARRALENELEAAQG-------NLSQTT-------QEQKQLSEKLKEES---------EQKEQLRR----------L 935
Cdd:TIGR02169 546 GNRLNNVVVEDDAVAKEAiellkrrKAGRATflplnkmRDERRDLSILSEDGvigfavdlvEFDPKYEPafkyvfgdtlV 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 936 KNEMENERWHLGK----TIE-KLQKEMADIVEASRTSTLELQNQLDEYKeknrrELAEMQRQLKEktLEAEKSRLtamkm 1010
Cdd:TIGR02169 626 VEDIEAARRLMGKyrmvTLEgELFEKSGAMTGGSRAPRGGILFSRSEPA-----ELQRLRERLEG--LKRELSSL----- 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1011 qdemrlmEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAkshLKDDRSRLV---KQMEDKVSQLEMELEEERNNSDLL 1087
Cdd:TIGR02169 694 -------QSELRRIENRLDELSQELSDASRKIGEIEKEIEQ---LEQEEEKLKerlEELEEDLSSLEQEIENVKSELKEL 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1088 SERISRSREQMEQVRNEL--LQERAAR---QDLECDKISLERQNKDLKSRIIHLEGSYRSSK------EGLVVQMEARIA 1156
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALndLEARLSHsriPEIQAELSKLEEEVSRIEARLREIEQKLNRLTlekeylEKEIQELQEQRI 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1157 ELEDRLESEERDRANLQLSNRRLERKVKEL---VMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQ 1233
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEELEEELEELeaaLRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
|
730 740
....*....|....*....|...
gi 2462546316 1234 RELEEQMDMNEHLQGQLNSMKKD 1256
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGEDEEI 946
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
726-1267 |
1.44e-22 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 104.76 E-value: 1.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 726 GALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKE---EVSSHDQEMDKLKEQYDaELQALRESVEEATKN 802
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEissELPELREELEKLEKEVK-ELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 803 VEVLasrsntsEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQrQIEDLKGDEAKAKETLKKYEGEIRQLEEALVH 882
Cdd:PRK03918 247 LESL-------EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 883 ARkEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHL-GKTIEKLQKEMadiv 961
Cdd:PRK03918 319 LE-EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLtGLTPEKLEKEL---- 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 962 EASRTSTLELQNQLDEYKEKnRRELAEMQRQLKEKTLEAEKSRLTA------MKMQDEMRLMEE---ELRDYQRAQDEAL 1032
Cdd:PRK03918 394 EELEKAKEEIEEEISKITAR-IGELKKEIKELKKAIEELKKAKGKCpvcgreLTEEHRKELLEEytaELKRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1033 TKRQLLEQTLKDLEYELEAKS----------HLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVr 1102
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKESeliklkelaeQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL- 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1103 NELLQERAA----RQDLECDKISLERQ--------NKDLKSRIIHLEGSYRSSKEglVVQMEARIAELEDRLESEERD-- 1168
Cdd:PRK03918 552 EELKKKLAElekkLDELEEELAELLKEleelgfesVEELEERLKELEPFYNEYLE--LKDAEKELEREEKELKKLEEEld 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1169 --RANLQLSNRRLERKVKEL----VMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQmdm 1242
Cdd:PRK03918 630 kaFEELAETEKRLEELRKELeeleKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER--- 706
|
570 580
....*....|....*....|....*
gi 2462546316 1243 nEHLQGQLNSMKKDLSRLKKLPSKV 1267
Cdd:PRK03918 707 -EKAKKELEKLEKALERVEELREKV 730
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
608-1190 |
1.74e-22 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 105.15 E-value: 1.74e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 608 EVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELF 687
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 688 QVKMEREQHQTEIRDLQDQLSEMHDELD----SAKRSEDREKG-ALIEELLQAKQDLQDLLIAkeeqeDLLRKRERELTA 762
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAeaeaQARASEERVRGgRAVEEVLKASIQGVHGTVA-----QLGSVGERYATA 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 763 LKGA----------------------LKE------------EVSSHDQEMDKLKEQ----YDAELQALRESVEEATKNV- 803
Cdd:TIGR02169 541 IEVAagnrlnnvvveddavakeaielLKRrkagratflplnKMRDERRDLSILSEDgvigFAVDLVEFDPKYEPAFKYVf 620
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 804 -EVLASRSNTSEQDQAGTEMRVKLLQEENEK-------------LQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKY 869
Cdd:TIGR02169 621 gDTLVVEDIEAARRLMGKYRMVTLEGELFEKsgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRI 700
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 870 EGEIRQLEEALVHARKEekeavsaRRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKT 949
Cdd:TIGR02169 701 ENRLDELSQELSDASRK-------IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 950 IEKLQKEMADIVEASRTSTL-ELQNQLDEYKEKNRR---ELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQ 1025
Cdd:TIGR02169 774 LHKLEEALNDLEARLSHSRIpEIQAELSKLEEEVSRieaRLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1026 RAQDEALTKRQLLEQTLKDLEYEL----EAKSHLKDDRSRLVKQM---EDKVSQLEMELEEERNNSDLLSERISRSREQM 1098
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALrdleSRLGDLKKERDELEAQLrelERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1099 EQVRNELLQ-ERAARQDLECDKISLERQnkDLKSRIIHLEG-SYRSSKEGLVVqmEARIAELEDRLESEERDRANLQLSN 1176
Cdd:TIGR02169 934 SEIEDPKGEdEEIPEEELSLEDVQAELQ--RVEEEIRALEPvNMLAIQEYEEV--LKRLDELKEKRAKLEEERKAILERI 1009
|
650
....*....|....
gi 2462546316 1177 RRLERKVKELVMQV 1190
Cdd:TIGR02169 1010 EEYEKKKREVFMEA 1023
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
641-1263 |
1.85e-22 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 104.76 E-value: 1.85e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 641 KEERERMRANLEELRSQHNEKVEENSTLQQRLEESE--GELRKNLEELFQVKM--EREQHQTEIRDLQDQLSEMHDELDS 716
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAEryQALLKEKREYEGYELlkEKEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 717 AKRsEDREKGALIEELLQAKQDLQDLLIAKEEQEDL-LRKRERELTALKGALKEEVSSHDQEMDKLKEQ----------Y 785
Cdd:TIGR02169 256 LTE-EISELEKRLEEIEQLLEELNKKIKDLGEEEQLrVKEKIGELEAEIASLERSIAEKERELEDAEERlakleaeidkL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 786 DAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKET 865
Cdd:TIGR02169 335 LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 866 LKKYEGEIRQLEEALvhARKEEKEAvsarrALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWH 945
Cdd:TIGR02169 415 LQRLSEELADLNAAI--AGIEAKIN-----ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 946 LGKTIEKLQKEMADIVEASRTS-------------TLELQNQLDEYKE-------------------------------- 980
Cdd:TIGR02169 488 LQRELAEAEAQARASEERVRGGraveevlkasiqgVHGTVAQLGSVGEryataievaagnrlnnvvveddavakeaiell 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 981 KNRR-------ELAEMQRQLKEKTLEAEKSRL-------------------------------TAMKMQDEMRL--MEEE 1020
Cdd:TIGR02169 568 KRRKagratflPLNKMRDERRDLSILSEDGVIgfavdlvefdpkyepafkyvfgdtlvvedieAARRLMGKYRMvtLEGE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1021 LRD--------YQRAQDEALTKRQLLEQT------LKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDL 1086
Cdd:TIGR02169 648 LFEksgamtggSRAPRGGILFSRSEPAELqrlrerLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1087 LSERISRSREQMEQVR-------NELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSK----EGLVVQMEARI 1155
Cdd:TIGR02169 728 LEQEEEKLKERLEELEedlssleQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRipeiQAELSKLEEEV 807
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1156 AELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHL---SLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKL 1232
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEqikSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
|
730 740 750
....*....|....*....|....*....|.
gi 2462546316 1233 QRELEEQMDMNEHLQGQLNSMKKDLSRLKKL 1263
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
670-1261 |
4.50e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 100.52 E-value: 4.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 670 QRLEESEGELRKNLEELfqvkmEREQHQTEI-RDLQDQLSEMhdeldsakrsedrEKGALIEELLQAKQDLQDLLIAKEE 748
Cdd:TIGR02168 189 DRLEDILNELERQLKSL-----ERQAEKAERyKELKAELREL-------------ELALLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 749 QEDLLRKRERELTALKGALkEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQagtemrvKLLQ 828
Cdd:TIGR02168 251 AEEELEELTAELQELEEKL-EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL-------EELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 829 EENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNL 908
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 909 SQTTQEQKQLSEKLKEESEQKEQLRrlKNEMENERWHLGKTIEKLQKEMADIVEASRTstleLQNQLdeYKEKNRRELAE 988
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEELL--KKLEEAELKELQAELEELEEELEELQEELER----LEEAL--EELREELEEAE 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 989 MQRQLKEKTLEAEKSRLTAMKMqdemrlMEEELRDYQRAQDEALTKRQLLEQTL-------------------------- 1042
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLER------LQENLEGFSEGVKALLKNQSGLSGILgvlselisvdegyeaaieaalggrlq 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1043 ----KDLEYELEAKSHLKDDRS--------RLVKQMEDKVSQLEMeLEEERNNSDLLSERISRS---------------- 1094
Cdd:TIGR02168 549 avvvENLNAAKKAIAFLKQNELgrvtflplDSIKGTEIQGNDREI-LKNIEGFLGVAKDLVKFDpklrkalsyllggvlv 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1095 ----REQMEQVRNELLQER--------------AARQDLECDKISLERQN--KDLKSRIIHLEGSYRSSKEGLVV----- 1149
Cdd:TIGR02168 628 vddlDNALELAKKLRPGYRivtldgdlvrpggvITGGSAKTNSSILERRReiEELEEKIEELEEKIAELEKALAElrkel 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1150 -QMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKamkrQVEEAEEEIDRLESS 1228
Cdd:TIGR02168 708 eELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE----RLEEAEEELAEAEAE 783
|
650 660 670
....*....|....*....|....*....|...
gi 2462546316 1229 KKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLK 1261
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
607-1067 |
1.15e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 98.86 E-value: 1.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEEL 686
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 687 FQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGA 766
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 767 LKEEVSSHDQEmdklkEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQG---------- 836
Cdd:COG1196 462 LELLAELLEEA-----ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVavligveaay 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 837 RSEELERRVAQLQRQIEDLKGDEAKAKETLKKY--------------EGEIRQLEEALVHARKEEKEAVSARRALENELE 902
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkirARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 903 AAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKN 982
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 983 RRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEElrdyQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRL 1062
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER----EELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*
gi 2462546316 1063 VKQME 1067
Cdd:COG1196 773 EREIE 777
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
681-1240 |
1.58e-20 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 98.45 E-value: 1.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 681 KNLEELFQVKM-EREQHQTEIRDLQ---DQLSEMHDELDSAKRSEDrekgaLIEELLQAKQDLQDLLIAKEEQEDLLRKR 756
Cdd:COG4913 207 GDLDDFVREYMlEEPDTFEAADALVehfDDLERAHEALEDAREQIE-----LLEPIRELAERYAAARERLAELEYLRAAL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 757 ERELTALK-GALKEEVSSHDQEMDKLKEQYD---AELQALRESVEEATKnvevlasrsntsEQDQAGTEmRVKLLQEENE 832
Cdd:COG4913 282 RLWFAQRRlELLEAELEELRAELARLEAELErleARLDALREELDELEA------------QIRGNGGD-RLEQLEREIE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 833 KLQGRSEELERRVAQLQRQIEDLK----GDE-------AKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENEL 901
Cdd:COG4913 349 RLERELEERERRRARLEALLAALGlplpASAeefaalrAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 902 EAAQGNLSQTTQEQKQLSEKLKEESEQKE----------QLRRlknemENERWH---------LGKTI---EKLQKEMAD 959
Cdd:COG4913 429 ASLERRKSNIPARLLALRDALAEALGLDEaelpfvgeliEVRP-----EEERWRgaiervlggFALTLlvpPEHYAAALR 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 960 IVEAsrtstLELQNQLDEYKEKNRRELAEMQR----QLKEKtLEAEKSRLTA---MKMQDEMRLM----EEELRDYQRA- 1027
Cdd:COG4913 504 WVNR-----LHLRGRLVYERVRTGLPDPERPRldpdSLAGK-LDFKPHPFRAwleAELGRRFDYVcvdsPEELRRHPRAi 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1028 QDEALTKRqlleqtlkdleyelEAKSHLKDDRSRLVKQM------EDKVSQLEMELEEERNNSDLLSERISRSREQMEQV 1101
Cdd:COG4913 578 TRAGQVKG--------------NGTRHEKDDRRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDAL 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1102 RN--ELLQERAARQDLECDKISLERQNKDLKSRIIHLEgsyRSSKEglVVQMEARIAELEDRLESEERDRANLQLSNRRL 1179
Cdd:COG4913 644 QErrEALQRLAEYSWDEIDVASAEREIAELEAELERLD---ASSDD--LAALEEQLEELEAELEELEEELDELKGEIGRL 718
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 1180 ERKVKELVMQVD---------------DEHLSLTDQKDQLSLRlKAMKRQVEEAEEEIDRLESSKKKLQRELEEQM 1240
Cdd:COG4913 719 EKELEQAEEELDelqdrleaaedlarlELRALLEERFAAALGD-AVERELRENLEERIDALRARLNRAEEELERAM 793
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
607-1124 |
8.87e-19 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 92.82 E-value: 8.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQhNEKVEENstlQQRLEESEGELRKNLEEL 686
Cdd:PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKE-LESLEGS---KRKLEEKIRELEERIEEL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 687 FQVKMEREQHQTEIRDLQD------QLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDlLRKREREL 760
Cdd:PRK03918 272 KKEIEELEEKVKELKELKEkaeeyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE-LKKKLKEL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 761 TALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLasrsntseqdqagtEMRVKLLQEENEKLQGRSEE 840
Cdd:PRK03918 351 EKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEEL--------------EKAKEEIEEEISKITARIGE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 841 LERRVAQLQRQIEDLKG------------DEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQG-- 906
Cdd:PRK03918 417 LKKEIKELKKAIEELKKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEli 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 907 NLSQTTQEQKQLSEKLK--------EESEQKEQLRRLKNEMENERWHLGKTIEKLQ---KEMADIVEASRTSTLELQNQL 975
Cdd:PRK03918 497 KLKELAEQLKELEEKLKkynleeleKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEelkKKLAELEKKLDELEEELAELL 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 976 DEYKEKNRRELAEMQRQLKEKTlEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHL 1055
Cdd:PRK03918 577 KELEELGFESVEELEERLKELE-PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462546316 1056 KDDRSRlvKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLER 1124
Cdd:PRK03918 656 YSEEEY--EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
627-1257 |
1.05e-18 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 92.41 E-value: 1.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 627 QRQLQLEVKNQQNIKEERErMRANLEELRSQHNEKVEEnstlQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQ 706
Cdd:PRK02224 185 QRGSLDQLKAQIEEKEEKD-LHERLNGLESELAELDEE----IERYEEQREQARETRDEADEVLEEHEERREELETLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 707 LsemhDELDSAKRSEDREKGALIEELLQAKQDLQDLLiakEEQEDLLRKrerelTALKGALKEEVSSHDQEMDKLKEQYD 786
Cdd:PRK02224 260 I----EDLRETIAETEREREELAEEVRDLRERLEELE---EERDDLLAE-----AGLDDADAEAVEARREELEDRDEELR 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 787 AELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETL 866
Cdd:PRK02224 328 DRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 867 KKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQ-----GNLSQTTQ--EQKQLSEKLKEESEQKEQLRRLKNEM 939
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEAEalleaGKCPECGQpvEGSPHVETIEEDRERVEELEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 940 ENERWHLGKTIEKLQkemaDIVEASRTStlelqNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEE 1019
Cdd:PRK02224 488 EEEVEEVEERLERAE----DLVEAEDRI-----ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1020 ELRDYQRAQDEALtkrqlleQTLKDLEYELEAkshLKDDRSRLvkqmeDKVSQLEMELEEERnnsdllsERISRSREQME 1099
Cdd:PRK02224 559 AAAEAEEEAEEAR-------EEVAELNSKLAE---LKERIESL-----ERIRTLLAAIADAE-------DEIERLREKRE 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1100 QvrnellqeRAARQDLECDKISlerqnkDLKSRIIHLEGSYRsskeglvvqmEARIAELEdrlesEERDRAnlqlsnrrl 1179
Cdd:PRK02224 617 A--------LAELNDERRERLA------EKRERKRELEAEFD----------EARIEEAR-----EDKERA--------- 658
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462546316 1180 erkvKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQReLEEQMDMNEHLQGQLNSMKKDL 1257
Cdd:PRK02224 659 ----EEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEA-LEALYDEAEELESMYGDLRAEL 731
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
633-1255 |
3.69e-18 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 91.36 E-value: 3.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 633 EVKNQQNIKEERERMRAnlEELRSQHNEKVEENSTLQQRLEESEG-----ELRKNLEElfQVKMEREQHQTEIRDLQDQL 707
Cdd:PTZ00121 1186 EVRKAEELRKAEDARKA--EAARKAEEERKAEEARKAEDAKKAEAvkkaeEAKKDAEE--AKKAEEERNNEEIRKFEEAR 1261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 708 SEMHDELDSAKRSEDREKGaliEELLQAKQdlqdlliakEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDA 787
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARKA---DELKKAEE---------KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 788 ELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRvAQLQRQIEDLK---------GD 858
Cdd:PTZ00121 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK-AEEKKKADEAKkkaeedkkkAD 1408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 859 EAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQ---EQKQLSEKLKEESEQKEQLRRL 935
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKkkaEEAKKADEAKKKAEEAKKADEA 1488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 936 KNEMENERwhlgKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMR 1015
Cdd:PTZ00121 1489 KKKAEEAK----KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK 1564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1016 LMEEELRDYQR---AQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMElEEERNNSDLLSERIS 1092
Cdd:PTZ00121 1565 KAEEAKKAEEDknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEA 1643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1093 RSREQMEQVRNEllqeraarqdlecdkislERQNKdlksriihlegsYRSSKEGLVVQMEARIAELEDRLESEERDRANL 1172
Cdd:PTZ00121 1644 EEKKKAEELKKA------------------EEENK------------IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1173 QLSNRRLERKVKELVMQVDDEhlslTDQKDQLSLRLKAMKRQVEEAEEEidrLESSKKKLQRELEEQMDMNEHLQGQLNS 1252
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEE----KKKAEELKKAEEENKIKAEEAKKE---AEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
|
...
gi 2462546316 1253 MKK 1255
Cdd:PTZ00121 1767 EKK 1769
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
607-1255 |
1.24e-17 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 89.08 E-value: 1.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQLEvknqQNIKEERERMRANLEELRSQHNEKVEEnstLQQRLEESEgelrknlEEL 686
Cdd:pfam01576 26 SELKELEKKHQQLCEEKNALQEQLQAE----TELCAEAEEMRARLAARKQELEEILHE---LESRLEEEE-------ERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 687 FQVKMEREQHQTEIRDLQDQLSEMHDEldsakrsedREKGALIEELLQAK-QDLQDLLIAKEEQEDLLRKrerELTALKG 765
Cdd:pfam01576 92 QQLQNEKKKMQQHIQDLEEQLDEEEAA---------RQKLQLEKVTTEAKiKKLEEDILLLEDQNSKLSK---ERKLLEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 ALKEEVSSHDQEMDKLKeqydaELQALRESVEEATKNVEVLASRSNTSEQDqagtemrvklLQEENEKLQGRSEELERRV 845
Cdd:pfam01576 160 RISEFTSNLAEEEEKAK-----SLSKLKNKHEAMISDLEERLKKEEKGRQE----------LEKAKRKLEGESTDLQEQI 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 846 AQLQRQIEDLKGdeakaketlkkyegeirQLeealvhARKEEkeavsarralenELEAAQGNLSqttQEQKQLSEKLKEE 925
Cdd:pfam01576 225 AELQAQIAELRA-----------------QL------AKKEE------------ELQAALARLE---EETAQKNNALKKI 266
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 926 SEQKEQLRRLKNEMENERWHLGKTiEKLQKEMADIVEASRTS---TLELQNQLDEYKEKNRRELAEMQRQLKEKTlEAEK 1002
Cdd:pfam01576 267 RELEAQISELQEDLESERAARNKA-EKQRRDLGEELEALKTEledTLDTTAAQQELRSKREQEVTELKKALEEET-RSHE 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1003 SRLTAMKMQDEMRLME--EELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEE 1080
Cdd:pfam01576 345 AQLQEMRQKHTQALEEltEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSES 424
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1081 RNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSrIIHLEGSYRSSKEGLVVQMEARIAELED 1160
Cdd:pfam01576 425 ERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQE-LLQEETRQKLNLSTRLRQLEDERNSLQE 503
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1161 RLESEERDRANLQLSNRRLERKVKELVMQVDDEHLS---LTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELE 1237
Cdd:pfam01576 504 QLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTleaLEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELD 583
|
650
....*....|....*...
gi 2462546316 1238 EQMDMNEHLQGQLNSMKK 1255
Cdd:pfam01576 584 DLLVDLDHQRQLVSNLEK 601
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
584-1244 |
1.33e-16 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 85.79 E-value: 1.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 584 KIQTLKSRAAGSAQGNNQACNSTSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQhnekVE 663
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRAR----IE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 664 ENSTLQQRLEESEGELRknleelFQVKMER-EQHQTEIRDLQDQLSEMHDELDS--AKRSEDREKGALIEELLQAKQDLQ 740
Cdd:TIGR00618 271 ELRAQEAVLEETQERIN------RARKAAPlAAHIKAVTQIEQQAQRIHTELQSkmRSRAKLLMKRAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 741 DLLIAKEEQEDLLRkRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQ------ALRESVEEATKNVEVLASRSNTSE 814
Cdd:TIGR00618 345 RLLQTLHSQEIHIR-DAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQklqslcKELDILQREQATIDTRTSAFRDLQ 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 815 QDQAGTEMRVKLLQEENEKLQGRSEE------LERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEK 888
Cdd:TIGR00618 424 GQLAHAKKQQELQQRYAELCAAAITCtaqcekLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEP 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 889 EAV-------SARRALENELEAAQGNLSQTTQEQKQLSEKLK----EESEQKEQLRRLKNEMENERWHLGKTIEKLQkEM 957
Cdd:TIGR00618 504 CPLcgscihpNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEdvyhQLTSERKQRASLKEQMQEIQQSFSILTQCDN-RS 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 958 ADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELR--------DYQRAQD 1029
Cdd:TIGR00618 583 KEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTAlhalqltlTQERVRE 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1030 EALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNsdllseriSRSREQMEQVRNELLQER 1109
Cdd:TIGR00618 663 HALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEY--------DREFNEIENASSSLGSDL 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1110 AARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKElvmQ 1189
Cdd:TIGR00618 735 AAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQ---E 811
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462546316 1190 VDDEHLSLTDQKDQLSLRLKAMKRQVE-------EAEEEIDRLESSKKKLQRELEEQMDMNE 1244
Cdd:TIGR00618 812 IPSDEDILNLQCETLVQEEEQFLSRLEeksatlgEITHQLLKYEECSKQLAQLTQEQAKIIQ 873
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
769-1262 |
4.59e-16 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 84.07 E-value: 4.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 769 EEVSSHDQEMDKLKEQydaELQALRESVEEATKNVEVLASRSNTSEQDQAGT-------EMRVKL------LQEENEKLQ 835
Cdd:pfam01576 5 EEMQAKEEELQKVKER---QQKAESELKELEKKHQQLCEEKNALQEQLQAETelcaeaeEMRARLaarkqeLEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 836 GRSEELERRVAQL-------QRQIEDLKG-----DEAKAKETLKKY--EGEIRQLEEALVHARKEEKEAVSARRALENEL 901
Cdd:pfam01576 82 SRLEEEEERSQQLqnekkkmQQHIQDLEEqldeeEAARQKLQLEKVttEAKIKKLEEDILLLEDQNSKLSKERKLLEERI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 902 EAAQGNLSQTTQEQKQLSE-KLKEESEQKEQLRRLKNEmENERWHLGKTIEKLQKEMADIVEasrtSTLELQNQLDEYKE 980
Cdd:pfam01576 162 SEFTSNLAEEEEKAKSLSKlKNKHEAMISDLEERLKKE-EKGRQELEKAKRKLEGESTDLQE----QIAELQAQIAELRA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 981 KNRRELAEMQRQLKEktLEAEKSRLTAmkMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEA-KSHLKDD- 1058
Cdd:pfam01576 237 QLAKKEEELQAALAR--LEEETAQKNN--ALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAlKTELEDTl 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1059 -----RSRLVKQMEDKVSQLEMELEEE-RNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSR 1132
Cdd:pfam01576 313 dttaaQQELRSKREQEVTELKKALEEEtRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAE 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1133 IIHLEGSyRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERK---VKELVMQVDDEHLSLTDQKDQLSLRLK 1209
Cdd:pfam01576 393 LRTLQQA-KQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSElesVSSLLNEAEGKNIKLSKDVSSLESQLQ 471
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1210 AMKRQVEEAEEE-------IDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKK 1262
Cdd:pfam01576 472 DTQELLQEETRQklnlstrLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKK 531
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
604-1145 |
1.12e-15 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 82.38 E-value: 1.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 604 NSTSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNL 683
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQ 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 684 EELFQVKMEREQHQT----------EIRDLQDQLSEMHDE---LDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQE 750
Cdd:TIGR04523 187 KNIDKIKNKLLKLELllsnlkkkiqKNKSLESQISELKKQnnqLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 751 DLLRKRERELTALKGALKE---EVSSHDQEMDKLKEQYDAEL-QALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKL 826
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKElekQLNQLKSEISDLNNQKEQDWnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQ 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 827 LQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEavsarraLENELEAAQG 906
Cdd:TIGR04523 347 LKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQ-------KDEQIKKLQQ 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 907 NLSQTTQEQKQLSEklkEESEQKEQLRRLKNEMENerwhLGKTIEKLQKemadiveasrtSTLELQNQLDEYK---EKNR 983
Cdd:TIGR04523 420 EKELLEKEIERLKE---TIIKNNSEIKDLTNQDSV----KELIIKNLDN-----------TRESLETQLKVLSrsiNKIK 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 984 RELAEMQRQLKEKTLEAEksrltamKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYEL-EAKSHLKDDRSRL 1062
Cdd:TIGR04523 482 QNLEQKQKELKSKEKELK-------KLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKIsDLEDELNKDDFEL 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1063 VK-QMEDKVSQLEMELEEERNNSDLL-------SERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRII 1134
Cdd:TIGR04523 555 KKeNLEKEIDEKNKEIEELKQTQKSLkkkqeekQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
570
....*....|.
gi 2462546316 1135 HLEGSYRSSKE 1145
Cdd:TIGR04523 635 NIKSKKNKLKQ 645
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
607-1131 |
1.82e-15 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 82.01 E-value: 1.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRsqhnEKVEENSTlqqrleesegelrknleel 686
Cdd:PRK02224 216 AELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLR----ETIAETER------------------- 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 687 fqvkmEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREkGALIEELLQAKQDLQDlliAKEEQEDLLRKRERELTALKG- 765
Cdd:PRK02224 273 -----EREELAEEVRDLRERLEELEEERDDLLAEAGLD-DADAEAVEARREELED---RDEELRDRLEECRVAAQAHNEe 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 --ALKEEVSSHDQEMDKLKEQ---YDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEE 840
Cdd:PRK02224 344 aeSLREDADDLEERAEELREEaaeLESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 841 LERRVAQLQRQIEDLKGDEAKAKETLKkyEG---EIRQLEEALVHArkeekEAVSARRALENELEAAQGNLSQTTQEQKQ 917
Cdd:PRK02224 424 LREREAELEATLRTARERVEEAEALLE--AGkcpECGQPVEGSPHV-----ETIEEDRERVEELEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 918 LSEKLKEESEQKEQLRRLKNEMENerwhlgktIEKLQKEMADIVEASRTSTLELQNQLDEYKEknrrELAEMQRQLKEKT 997
Cdd:PRK02224 497 RLERAEDLVEAEDRIERLEERRED--------LEELIAERRETIEEKRERAEELRERAAELEA----EAEEKREAAAEAE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 998 LEAEKSRLTAMKMQDEMRLMEEElRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMEL 1077
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAELKER-IESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF 643
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 2462546316 1078 EEERnnSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKS 1131
Cdd:PRK02224 644 DEAR--IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE 695
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
638-1254 |
5.12e-15 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 80.86 E-value: 5.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 638 QNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELrKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSA 717
Cdd:TIGR00606 304 NDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTEL-LVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGF 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 718 KRSEDREKG-----ALIEELLQAK--------QDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQE------- 777
Cdd:TIGR00606 383 ERGPFSERQiknfhTLVIERQEDEaktaaqlcADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEElkfvike 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 778 -------MDKLKEQYDAELQALRE-SVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKL------QGRSEELER 843
Cdd:TIGR00606 463 lqqlegsSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLnhhtttRTQMEMLTK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 844 RVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLK 923
Cdd:TIGR00606 543 DKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLS 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 924 EESEQKEQLRRLKNEmENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE---------KNRRELAEMQRQLK 994
Cdd:TIGR00606 623 SYEDKLFDVCGSQDE-ESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpvcqrvfQTEAELQEFISDLQ 701
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 995 EKTLEAEksrltamkmqDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYEL----EAKSHLKDDRSRLVKQMEDKV 1070
Cdd:TIGR00606 702 SKLRLAP----------DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIpelrNKLQKVNRDIQRLKNDIEEQE 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1071 SQLEMELEEERNNSDLLSER--ISRSREQMEQVRNELLQERAARQ----DLECDKISLERQNKDLKSRIIHLEGSyrsSK 1144
Cdd:TIGR00606 772 TLLGTIMPEEESAKVCLTDVtiMERFQMELKDVERKIAQQAAKLQgsdlDRTVQQVNQEKQEKQHELDTVVSKIE---LN 848
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1145 EGLVVQMEARIAELEDRLESEERDRANLQLSNRR---LERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEE 1221
Cdd:TIGR00606 849 RKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRrqqFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928
|
650 660 670
....*....|....*....|....*....|...
gi 2462546316 1222 IDRLESSKKKLQRELEeqmDMNEHLQGQLNSMK 1254
Cdd:TIGR00606 929 ISSKETSNKKAQDKVN---DIKEKVKNIHGYMK 958
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
604-1254 |
5.32e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 80.55 E-value: 5.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 604 NSTSEVKDllEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNL 683
Cdd:pfam15921 95 NESNELHE--KQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 684 EELFQVKMEREQHQTEIR----DLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQD----LQDLLIAKEEQEDLLRK 755
Cdd:pfam15921 173 EQLRKMMLSHEGVLQEIRsilvDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTeisyLKGRIFPVEDQLEALKS 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 756 RERELTALKgalkeeVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSeQDQAgtemrvkllQEENEKLQ 835
Cdd:pfam15921 253 ESQNKIELL------LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEII-QEQA---------RNQNSMYM 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 836 GRSEELERRVAQLQRQIEDLKgdeakaketlKKYEGEIRQLEEALVHARKEEKEAVSARRALENEleaaQGNLSQTTQE- 914
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAK----------RMYEDKIEELEKQLVLANSELTEARTERDQFSQE----SGNLDDQLQKl 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 915 QKQLSEKLKEESEQKEQLRRL-KNEMENErwhlgKTIEKLQKEMADI-VEASRTSTLeLQNQLDEYKEKNRRELAEMQRq 992
Cdd:pfam15921 383 LADLHKREKELSLEKEQNKRLwDRDTGNS-----ITIDHLRRELDDRnMEVQRLEAL-LKAMKSECQGQMERQMAAIQG- 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 993 lKEKTLEAEKSRLTAMKMQDEM-RLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEA-KSHLKDDRSRL-------- 1062
Cdd:pfam15921 456 -KNESLEKVSSLTAQLESTKEMlRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAtNAEITKLRSRVdlklqelq 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1063 -VKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEgSYR 1141
Cdd:pfam15921 535 hLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFK-ILK 613
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1142 SSKEGLVVQMEARIAEledrLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEE 1221
Cdd:pfam15921 614 DKKDAKIRELEARVSD----LELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEE 689
|
650 660 670
....*....|....*....|....*....|...
gi 2462546316 1222 idrLESSKKKLQRELEEQMDMNEHLQGQLNSMK 1254
Cdd:pfam15921 690 ---METTTNKLKMQLKSAQSELEQTRNTLKSME 719
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
820-1219 |
8.09e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 8.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 820 TEMRVKLLQEENEKLQGRSEELERRVAQLQRQiedlkgdeAKAKETLKKYEGEIRQLEEALVHARKEEkeavsarraLEN 899
Cdd:TIGR02168 177 TERKLERTRENLDRLEDILNELERQLKSLERQ--------AEKAERYKELKAELRELELALLVLRLEE---------LRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 900 ELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENErwhlgktIEKLQKEMADIVEasrtstleLQNQLDEYK 979
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE-------IEELQKELYALAN--------EISRLEQQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 980 EKNRRELAEMQRQLKEKtleaeksrltamkmqdemrlmEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDR 1059
Cdd:TIGR02168 305 QILRERLANLERQLEEL---------------------EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1060 SRLVKQMEDKVSQLEMELEEERNNSDLLserisrsREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRiihlegs 1139
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQL-------ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK------- 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1140 yrsskeglvvQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVD---DEHLSLTDQKDQLSLRLKAMKRQVE 1216
Cdd:TIGR02168 430 ----------LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEeaeQALDAAERELAQLQARLDSLERLQE 499
|
...
gi 2462546316 1217 EAE 1219
Cdd:TIGR02168 500 NLE 502
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
841-1259 |
5.09e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 76.98 E-value: 5.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 841 LERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSE 920
Cdd:TIGR04523 122 LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 921 KL---KEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEyKEKNRRELAEMQRQLKE-- 995
Cdd:TIGR04523 202 LLsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE-QNKIKKQLSEKQKELEQnn 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 996 ----------KTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELE----AKSHLKDDRSR 1061
Cdd:TIGR04523 281 kkikelekqlNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISqlkkELTNSESENSE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1062 LVKQMEDKVSQLEMELEEERNNSDLLSERISRSRE-----QMEQVRNELLQERAarQDLECDKISLERQNKDLKSRIIHL 1136
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDleskiQNQEKLNQQKDEQI--KKLQQEKELLEKEIERLKETIIKN 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1137 EGSYR------SSKEGLVVQMEARIAELEDRLESEERDRANLQLSnrrLERKVKELVMQVDdEHLSLTDQKDQLSLRLKA 1210
Cdd:TIGR04523 439 NSEIKdltnqdSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN---LEQKQKELKSKEK-ELKKLNEEKKELEEKVKD 514
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 2462546316 1211 MKRQVEEAEEEIDRLESSKKKLQRELEEqmdmnehLQGQLNSMKKDLSR 1259
Cdd:TIGR04523 515 LTKKISSLKEKIEKLESEKKEKESKISD-------LEDELNKDDFELKK 556
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
666-1110 |
5.43e-14 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 76.73 E-value: 5.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 666 STLQQRLEES-EGELRKNLEELFqvkmeREQHQTEIRDLQdQLSEMHDELDSAKRSEDREKgALIEELLQAKQDLQDLLI 744
Cdd:COG4717 37 STLLAFIRAMlLERLEKEADELF-----KPQGRKPELNLK-ELKELEEELKEAEEKEEEYA-ELQEELEELEEELEELEA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 745 AKEEQEDLLRKRERELTAL-----KGALKEEVSSHDQEMDKLKEQYdAELQALRESVEEATKNVEVLASRsntseqdqag 819
Cdd:COG4717 110 ELEELREELEKLEKLLQLLplyqeLEALEAELAELPERLEELEERL-EELRELEEELEELEAELAELQEE---------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 820 temRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEK----------- 888
Cdd:COG4717 179 ---LEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlkearllllia 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 889 --------EAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEmadi 960
Cdd:COG4717 256 aallallgLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP---- 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 961 VEASRTSTLELQNQLDEYKEKnRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQdEALTKRQLLEQ 1040
Cdd:COG4717 332 PDLSPEELLELLDRIEELQEL-LREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQ-ELKEELEELEE 409
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462546316 1041 TLKDLEYELEAKSHLKDDrsrlvKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRN-----ELLQERA 1110
Cdd:COG4717 410 QLEELLGELEELLEALDE-----EELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgelaELLQELE 479
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
608-1257 |
6.32e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 77.10 E-value: 6.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 608 EVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELF 687
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 688 QVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGAliEELLQAKQDLQDLLIAKEEQE-----DLLRKRERELTA 762
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA--DELKKAAAAKKKADEAKKKAEekkkaDEAKKKAEEAKK 1445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 763 LKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVlasRSNTSEQDQAGTEMR-----------VKLLQEEN 831
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA---KKKAEEAKKKADEAKkaaeakkkadeAKKAEEAK 1522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 832 EKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEgEIRQLEEAlvhARKEEKEAVSARRA--------------- 896
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE-EKKKAEEA---KKAEEDKNMALRKAeeakkaeearieevm 1598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 897 -LENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERwhlgKTIEKLQKEMadivEASRTSTLELQNQL 975
Cdd:PTZ00121 1599 kLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK----KKAEELKKAE----EENKIKAAEEAKKA 1670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 976 DEykEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMR-LMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSH 1054
Cdd:PTZ00121 1671 EE--DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKkKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1055 LKDDrsrlvkqmedkvsqlemelEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDlECDKISLERQNKDLKSrii 1134
Cdd:PTZ00121 1749 AKKD-------------------EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED-EKRRMEVDKKIKDIFD--- 1805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1135 HLEGSYRSSKEGLVVQMEARiaELEDRLESEERDRANLQL--------------------SNRRLERKVKELVMQVDDEH 1194
Cdd:PTZ00121 1806 NFANIIEGGKEGNLVINDSK--EMEDSAIKEVADSKNMQLeeadafekhkfnknnengedGNKEADFNKEKDLKEDDEEE 1883
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462546316 1195 LSLTDQKDQLSlrLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDL 1257
Cdd:PTZ00121 1884 IEEADEIEKID--KDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREEIIKISKKDM 1944
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
628-1260 |
6.63e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 76.60 E-value: 6.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 628 RQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEEnstLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQL 707
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKI---LEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQK 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 708 SEMHDELDSAKRsEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDA 787
Cdd:TIGR04523 120 NKLEVELNKLEK-QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 788 ELQALRESVEEATKNVEVLASRSNTSEQdqagtemrVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLK 867
Cdd:TIGR04523 199 LELLLSNLKKKIQKNKSLESQISELKKQ--------NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 868 KYEGEIRQLEEALVHARKEEKEavsarraLENELEaaqgNLSQttQEQKQLSEKLKEE-SEQKEQLRRLKNEMENERwhl 946
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQLNQ-------LKSEIS----DLNN--QKEQDWNKELKSElKNQEKKLEEIQNQISQNN--- 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 947 gKTIEKLQKEMADI---VEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKE-KTLEAEKSRL---------TAMKMQDE 1013
Cdd:TIGR04523 335 -KIISQLNEQISQLkkeLTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiKNLESQINDLeskiqnqekLNQQKDEQ 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1014 MRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISR 1093
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1094 SREQMEQVRNEllqeraarqdlecdKISLERQNKDLKSRIihlegsyrSSKEGLVVQMEARIAELEDRLESEERDRANLq 1173
Cdd:TIGR04523 494 KEKELKKLNEE--------------KKELEEKVKDLTKKI--------SSLKEKIEKLESEKKEKESKISDLEDELNKD- 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1174 lsNRRLERKVKELVMQVDDEHLSltdqkdQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSM 1253
Cdd:TIGR04523 551 --DFELKKENLEKEIDEKNKEIE------ELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
....*..
gi 2462546316 1254 KKDLSRL 1260
Cdd:TIGR04523 623 KKENEKL 629
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
644-1145 |
9.25e-14 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 75.96 E-value: 9.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 644 RERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSED- 722
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 723 ----REKGALIEELLQAKQDLQDLLIAKEEQEDL---LRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRES 795
Cdd:COG4717 128 lplyQELEALEAELAELPERLEELEERLEELRELeeeLEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 796 VEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSE--------ELERRVAQLQRQIEDLKGdEAKAKETLK 867
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallALLGLGGSLLSLILTIAG-VLFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 868 KYEGEIRQLEEALVHARKEEKEAVSARRALEN-ELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERwhl 946
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELEEeELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--- 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 947 gkTIEKLQKEMADIVEASRTSTLE----LQNQLDEYKE-KNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEEL 1021
Cdd:COG4717 364 --QLEELEQEIAALLAEAGVEDEEelraALEQAEEYQElKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEEL 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1022 RDYQRAQDEALTKRQLLEQTLKDLEyELEAKSHLKDDRSRLVKQMEdkvsqlemELEEERNNSDLLSERISRSREQMEQV 1101
Cdd:COG4717 442 EELEEELEELREELAELEAELEQLE-EDGELAELLQELEELKAELR--------ELAEEWAALKLALELLEEAREEYREE 512
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 2462546316 1102 RNELLQERAAR--QDLECDKISLERQNKDLKSRIIHLEGSYRSSKE 1145
Cdd:COG4717 513 RLPPVLERASEyfSRLTDGRYRLIRIDEDLSLKVDTEDGRTRPVEE 558
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
651-1242 |
1.43e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 75.93 E-value: 1.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 651 LEELRSQHNEKVEenSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALIE 730
Cdd:pfam15921 247 LEALKSESQNKIE--LLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLES 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 731 ELLQAKQDLQDlliAKEEQEDLLRKRERELTALKGALKEEVSSHDQeMDKLKEQYDAELQALRESVEEATKNVEVLASRS 810
Cdd:pfam15921 325 TVSQLRSELRE---AKRMYEDKIEELEKQLVLANSELTEARTERDQ-FSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 811 NTSEQDQAGTEMRVKLLQEEnekLQGRSEELERRVA-----------QLQRQIEDLKGDeakaKETLKKYEGEIRQLEEA 879
Cdd:pfam15921 401 KRLWDRDTGNSITIDHLRRE---LDDRNMEVQRLEAllkamksecqgQMERQMAAIQGK----NESLEKVSSLTAQLEST 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 880 LVHARKEEKEAVSARRALENElEAAQGNLSQTTQEQKQLSE-------KLKEESEQK-EQLRRLKNEMENERwHLGKTIE 951
Cdd:pfam15921 474 KEMLRKVVEELTAKKMTLESS-ERTVSDLTASLQEKERAIEatnaeitKLRSRVDLKlQELQHLKNEGDHLR-NVQTECE 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 952 KLQKEMAdiveasrtstlelqnQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031
Cdd:pfam15921 552 ALKLQMA---------------EKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSE------RISRSR-EQMEQVRNE 1104
Cdd:pfam15921 617 DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEdyevlkRNFRNKsEEMETTTNK 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1105 L-LQERAARQDLECDKISLERQNKDLKSRIIHLEGSYR--SSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLER 1181
Cdd:pfam15921 697 LkMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKqiTAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQ 776
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 1182 KVKelvmqvddehlSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDM 1242
Cdd:pfam15921 777 ELS-----------TVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDI 826
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
739-1186 |
1.73e-13 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 75.19 E-value: 1.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 739 LQDLLIAK--EEQEDLLRKRERELTALKGALKEEvsshDQEMDKLKEQYDaELQALRESVEEATKNVEVLASRSNTSEQD 816
Cdd:COG4717 43 IRAMLLERleKEADELFKPQGRKPELNLKELKEL----EEELKEAEEKEE-EYAELQEELEELEEELEELEAELEELREE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 817 QAGTEMRVKLLQEENEKlqgrsEELERRVAQLQRQIEDLKgdeaKAKETLKKYEGEIRQLEEALVHARKEEKEAV-SARR 895
Cdd:COG4717 118 LEKLEKLLQLLPLYQEL-----EALEAELAELPERLEELE----ERLEELRELEEELEELEAELAELQEELEELLeQLSL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 896 ALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLgKTIEKLQKEMADIVEAS----------- 964
Cdd:COG4717 189 ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLLIAAallallglggs 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 965 -----------------------------RTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMR 1015
Cdd:COG4717 268 llsliltiagvlflvlgllallflllareKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1016 LMEEELRDYQRAQDEALTKR------QLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSE 1089
Cdd:COG4717 348 ELQELLREAEELEEELQLEEleqeiaALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1090 risrsreqmEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEgsyrssKEGLVVQMEARIAELEDRLESEERDR 1169
Cdd:COG4717 428 ---------EELEEELEELEEELEELEEELEELREELAELEAELEQLE------EDGELAELLQELEELKAELRELAEEW 492
|
490
....*....|....*..
gi 2462546316 1170 ANLQLSNRRLERKVKEL 1186
Cdd:COG4717 493 AALKLALELLEEAREEY 509
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
635-1241 |
2.72e-13 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 74.87 E-value: 2.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 635 KNQQNIKEERERMRANLE--------ELRSQHNEKVEENSTLQQRLEESEGELRKNLEelfQVKMEREQhQTEIRDLQDQ 706
Cdd:pfam12128 397 DKLAKIREARDRQLAVAEddlqalesELREQLEAGKLEFNEEEYRLKSRLGELKLRLN---QATATPEL-LLQLENFDER 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 707 LSEMHDELDSAKRSEDRekgaLIEELLQAKQdlqdlliAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYD 786
Cdd:pfam12128 473 IERAREEQEAANAEVER----LQSELRQARK-------RRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLR 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 787 AELQALRESVEEA--------TKNVEVLASRSNTSEQDQAGTEMRVKLLQEeNEKLQgRSEELERRVAQLQRQIEDLKGD 858
Cdd:pfam12128 542 KEAPDWEQSIGKVispellhrTDLDPEVWDGSVGGELNLYGVKLDLKRIDV-PEWAA-SEEELRERLDKAEEALQSAREK 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 859 EAKAKETLKKYEGEIRQLEEALVHARK---------------EEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLK 923
Cdd:pfam12128 620 QAAAEEQLVQANGELEKASREETFARTalknarldlrrlfdeKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQ 699
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 924 EESE-QKEQLRRLKNEMENERWHLgktIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEM----QRQLKektL 998
Cdd:pfam12128 700 AWLEeQKEQKREARTEKQAYWQVV---EGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLgvdpDVIAK---L 773
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 999 EAEKSRLTAMKMQDEMRlmEEELRDYQRAQDEA-LTKRQLLEQTLKDLEYELeakSHLKDDRSRLVKQMEDKVSQLEMEL 1077
Cdd:pfam12128 774 KREIRTLERKIERIAVR--RQEVLRYFDWYQETwLQRRPRLATQLSNIERAI---SELQQQLARLIADTKLRRAKLEMER 848
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1078 EEERNNSDLLSERISRSREQMEQVRNelLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAE 1157
Cdd:pfam12128 849 KASEKQQVRLSENLRGLRCEMSKLAT--LKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSGS 926
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1158 LEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQlSLR-----LKAMKRQVEEAEEEID-RLESSKKK 1231
Cdd:pfam12128 927 GLAETWESLREEDHYQNDKGIRLLDYRKLVPYLEQWFDVRVPQSIM-VLReqvsiLGVDLTEFYDVLADFDrRIASFSRE 1005
|
650
....*....|
gi 2462546316 1232 LQRELEEQMD 1241
Cdd:pfam12128 1006 LQREVGEEAF 1015
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
583-999 |
6.46e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 73.54 E-value: 6.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 583 EKIQTLKSRAAGSaqgNNQACNSTSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKV 662
Cdd:PRK02224 349 EDADDLEERAEEL---REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 663 EENSTLQQRLEESEGELRKNLEELFQVK-------MEREQHQTEIRDLQDQLSEMHDELDSAKrsedrekgALIEELLQA 735
Cdd:PRK02224 426 EREAELEATLRTARERVEEAEALLEAGKcpecgqpVEGSPHVETIEEDRERVEELEAELEDLE--------EEVEEVEER 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 736 KQDLQDLLIAKEEQEDLLRKRER--ELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTS 813
Cdd:PRK02224 498 LERAEDLVEAEDRIERLEERREDleELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAEL 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 814 EQDQAGTEMRVKLLqEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARkeekeavsa 893
Cdd:PRK02224 578 NSKLAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR--------- 647
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 894 rraleneLEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERwhlgKTIEKLQKEMADIveASRTSTLE-LQ 972
Cdd:PRK02224 648 -------IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL----EELEELRERREAL--ENRVEALEaLY 714
|
410 420
....*....|....*....|....*..
gi 2462546316 973 NQLDEYKEKNRRELAEMqRQLKEKTLE 999
Cdd:PRK02224 715 DEAEELESMYGDLRAEL-RQRNVETLE 740
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
780-1003 |
8.37e-13 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 71.72 E-value: 8.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 780 KLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDE 859
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 860 AKAKETLKKYEGEI----RQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRL 935
Cdd:COG4942 100 EAQKEELAELLRALyrlgRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462546316 936 KNEMENERwhlgKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKS 1003
Cdd:COG4942 180 LAELEEER----AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
606-1080 |
1.44e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.40 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 606 TSEVKDLLEQKSKLTIEVAELQRQLQ-LEVKNQQ--NIKEERERMRANLEELRSQHnEKVEENSTLQQRLEESEGELR-K 681
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKeLEEKEERleELKKKLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTgL 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 682 NLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDsaKRSEDREKGalIEELLQAKQD--LQDLLIAKEEQEDLLRKRERE 759
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELK--KEIKELKKA--IEELKKAKGKcpVCGRELTEEHRKELLEEYTAE 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 760 LtalkgalkEEVSSHDQEMDKLKEQYDAELqalrESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSE 839
Cdd:PRK03918 461 L--------KRIEKELKEIEEKERKLRKEL----RELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYE 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 840 ELERRVAQLQRQIEDLKGDEAKAKEtlkkYEGEIRQLEEALvhaRKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLS 919
Cdd:PRK03918 529 KLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKL---DELEEELAELLKELEELGFESVEELEERLKELEPFY 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 920 EKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEAS-RTSTLELQNQLDEYKEKNRR--ELAEMQRQLKEK 996
Cdd:PRK03918 602 NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRkELEELEKKYSEEEYEELREEylELSRELAGLRAE 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 997 TLEAEKSRLTAMKMQDEMRLMEEELRDYQRaqdealtKRQLLEQTLKDLEyelEAKSHLKDDRSRLVKQMEDKVSQLEME 1076
Cdd:PRK03918 682 LEELEKRREEIKKTLEKLKEELEEREKAKK-------ELEKLEKALERVE---ELREKVKKYKALLKERALSKVGEIASE 751
|
....
gi 2462546316 1077 LEEE 1080
Cdd:PRK03918 752 IFEE 755
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
622-1225 |
1.53e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 72.64 E-value: 1.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 622 EVAELQRQL-QLE--VKNQQNIKEERERMRAnLEELRSQHN--EKVEENSTLQQRLEESEGELrknleelfqvkmerEQH 696
Cdd:COG4913 243 ALEDAREQIeLLEpiRELAERYAAARERLAE-LEYLRAALRlwFAQRRLELLEAELEELRAEL--------------ARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 697 QTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELlqaKQDLQDLliakeeqEDLLRKRERELTALKGALKeevsshdq 776
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDRLEQL---EREIERL-------ERELEERERRRARLEALLA-------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 777 emdKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERR-------VAQLQ 849
Cdd:COG4913 370 ---ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRksniparLLALR 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 850 RQI-EDLKGDEAKAK---ETLkkyegEIRQLE-------EALVHARK-----EEKEAVSARRALEN----------ELEA 903
Cdd:COG4913 447 DALaEALGLDEAELPfvgELI-----EVRPEEerwrgaiERVLGGFAltllvPPEHYAAALRWVNRlhlrgrlvyeRVRT 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 904 AQGNLSQTTQEQKQLSEKLK-EESEQ----KEQLRRLKN--------EMENERWHLgkTIEKLQKEMADIVEASRTSTLE 970
Cdd:COG4913 522 GLPDPERPRLDPDSLAGKLDfKPHPFrawlEAELGRRFDyvcvdspeELRRHPRAI--TRAGQVKGNGTRHEKDDRRRIR 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 971 LQNQLDeykEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQD--EALTKRQLLEQTLKDLEYE 1048
Cdd:COG4913 600 SRYVLG---FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEysWDEIDVASAEREIAELEAE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1049 LEAkshLKDDRSRLvKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKD 1128
Cdd:COG4913 677 LER---LDASSDDL-AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1129 LKSRIIHLEGSYRSSKEGL---VVQMEARIAELEDRLESEER--------DRANL---------------QLSNRRLERK 1182
Cdd:COG4913 753 ERFAAALGDAVERELRENLeerIDALRARLNRAEEELERAMRafnrewpaETADLdadleslpeylalldRLEEDGLPEY 832
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 2462546316 1183 VKELvmqvddEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRL 1225
Cdd:COG4913 833 EERF------KELLNENSIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
845-1235 |
1.61e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.41 E-value: 1.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 845 VAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSaRRALENELEAAqgnlsqttqEQKQLSEKLKE 924
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-YQALLKEKREY---------EGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 925 ESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELqnqldeyKEKNRRELAEMQRQLKEKTLEAEKSR 1004
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI-------KDLGEEEQLRVKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1005 LTAMKMQDEMRLMEEelrdyQRAQDEALTKRQLLEqtLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNS 1084
Cdd:TIGR02169 308 RSIAEKERELEDAEE-----RLAKLEAEIDKLLAE--IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1085 DLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLegsyrsskeglvvqmEARIAELEDRLES 1164
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI---------------EAKINELEEEKED 445
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 1165 eerdranLQLSNRRLERKVKELVMQVDDEHlsltDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRE 1235
Cdd:TIGR02169 446 -------KALEIKKQEWKLEQLAADLSKYE----QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
539-1117 |
1.93e-12 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 72.39 E-value: 1.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 539 LLKGQQELTQQTNEETAKQILYNYLKEGSTDNDDATKRKVNlVFEKIQTLKSRAAGSAQGNNQACNSTSEVKDLLEQKSK 618
Cdd:TIGR00606 506 LQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMD-KDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSK 584
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 619 LTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEE---NSTLQQRLEESEGELRKNLEELFQVKMEREQ 695
Cdd:TIGR00606 585 EINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDvcgSQDEESDLERLKEEIEKSSKQRAMLAGATAV 664
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 696 HQTEIRDLQDQLSEMHDELDSAKRSEdrekgaliEELLQAKQDLQDLLIA----KEEQEDLLRKRERELTALKGALKEEV 771
Cdd:TIGR00606 665 YSQFITQLTDENQSCCPVCQRVFQTE--------AELQEFISDLQSKLRLapdkLKSTESELKKKEKRRDEMLGLAPGRQ 736
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 772 SSHDQEMDKLKE------QYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRvkllqeenEKLQGRSEELERRV 845
Cdd:TIGR00606 737 SIIDLKEKEIPElrnklqKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIM--------ERFQMELKDVERKI 808
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 846 AQLQRQIEDLKGDEAKAKETLKKYEGE-----IRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSE 920
Cdd:TIGR00606 809 AQQAAKLQGSDLDRTVQQVNQEKQEKQheldtVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEE 888
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 921 KLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQ---------- 990
Cdd:TIGR00606 889 QLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKdienkiqdgk 968
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 991 -RQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKsHLKDDRSRLVKQM-ED 1068
Cdd:TIGR00606 969 dDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELK-EVEEELKQHLKEMgQM 1047
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 2462546316 1069 KVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLEC 1117
Cdd:TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQF 1096
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
613-1020 |
2.29e-12 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 71.34 E-value: 2.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 613 LEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHN--EKVEENSTLQQRLEESEGELR---KNLEELF 687
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEklEKLLQLLPLYQELEALEAELAelpERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 688 QVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKgalIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGAL 767
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLAT---EEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 768 KE-EVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRV----------KLLQEENEKLQG 836
Cdd:COG4717 230 EQlENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLAllflllarekASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 837 RSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEA-------------------------- 890
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELqleeleqeiaallaeagvedeeelra 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 891 ----VSARRALENELEAAQGNLSQTTQEQKQLSEKLKEEsEQKEQLRRLKNEMENERwhlgKTIEKLQKEMADIveASRT 966
Cdd:COG4717 390 aleqAEEYQELKEELEELEEQLEELLGELEELLEALDEE-ELEEELEELEEELEELE----EELEELREELAEL--EAEL 462
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 2462546316 967 STLELQNQLDEykekNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEE 1020
Cdd:COG4717 463 EQLEEDGELAE----LLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
532-995 |
7.64e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 70.05 E-value: 7.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 532 NTQATPDLLKGQQELTQQTNEETAKQILYNYLKEGSTDNDDATKRKVNLVFEKIQTLKsraagsaQGNNQACNSTSEVKD 611
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK-------ELEKQLNQLKSEISD 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 612 LLEQKSkltievAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVE-----------ENSTLQQRLEESEGELR 680
Cdd:TIGR04523 300 LNNQKE------QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISqlkkeltnsesENSEKQRELEEKQNEIE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 681 KnleelfqVKMEREQHQTEIRDLQDQLSEMHDELDSAKrsedrekgalieellQAKQDLQDLLIAKEEQEDLLRKREREL 760
Cdd:TIGR04523 374 K-------LKKENQSYKQEIKNLESQINDLESKIQNQE---------------KLNQQKDEQIKKLQQEKELLEKEIERL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 761 TALKGALKEEVSSHDQEMDKLKEQYDaELQALRESVEeatKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEE 840
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVKELIIK-NLDNTRESLE---TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 841 LERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALvharkEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSE 920
Cdd:TIGR04523 508 LEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL-----NKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKK 582
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462546316 921 KLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNqLDEYKEKNRRELAEMQRQLKE 995
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN-IKSKKNKLKQEVKQIKETIKE 656
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
779-1262 |
1.30e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.56 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 779 DKLKEQYDaELQALRESVEEATKNVEVL-----------ASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQ 847
Cdd:COG4913 228 DALVEHFD-DLERAHEALEDAREQIELLepirelaeryaAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 848 LQRQIEDLKGDEAKAKETLKKYEGEIRQ--------LEEALVHARKEEKEAVSARRALENELEAAQgnlSQTTQEQKQLS 919
Cdd:COG4913 307 LEAELERLEARLDALREELDELEAQIRGnggdrleqLEREIERLERELEERERRRARLEALLAALG---LPLPASAEEFA 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 920 EKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMAdiveasrtstlELQNQLDEYKEKNR---RELAEMQRQLKEK 996
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR-----------ELEAEIASLERRKSnipARLLALRDALAEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 997 TLEAEksrltamkmqDEMR----LME--EELRDYQRAQDEAL-TKRQLLeqtLKDLEYELEAKSHL--KDDRSRLVKQme 1067
Cdd:COG4913 453 LGLDE----------AELPfvgeLIEvrPEEERWRGAIERVLgGFALTL---LVPPEHYAAALRWVnrLHLRGRLVYE-- 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1068 dKVSQLEMELEEERNNSDLLSERIS-RSREQMEQVRNELLQERAAR-----QDLECDK--ISLERQNKDLKSRIIHLEGS 1139
Cdd:COG4913 518 -RVRTGLPDPERPRLDPDSLAGKLDfKPHPFRAWLEAELGRRFDYVcvdspEELRRHPraITRAGQVKGNGTRHEKDDRR 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1140 YRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQvdDEHLSLTDQKDQLSLRLKAMKRQVEEAE 1219
Cdd:COG4913 597 RIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQER--REALQRLAEYSWDEIDVASAEREIAELE 674
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 2462546316 1220 EEIDRLESS----------KKKLQRELEEqmdmnehLQGQLNSMKKDLSRLKK 1262
Cdd:COG4913 675 AELERLDASsddlaaleeqLEELEAELEE-------LEEELDELKGEIGRLEK 720
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
898-1262 |
1.57e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 1.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 898 ENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDE 977
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 978 YkeknRRELAEMQRQLKEKTLEAEksrltamkmQDEMRLMEEELRDYQRAQDEALT-KRQLLEqtlkdleyeleakshLK 1056
Cdd:TIGR02169 249 L----EEELEKLTEEISELEKRLE---------EIEQLLEELNKKIKDLGEEEQLRvKEKIGE---------------LE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1057 DDRSRLVKQMEDKVSQLEmELEEERNNSDllsERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHL 1136
Cdd:TIGR02169 301 AEIASLERSIAEKERELE-DAEERLAKLE---AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1137 EGSYRSSKEGLVvQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDehlsLTDQKDQLSLRLKAMKRQVE 1216
Cdd:TIGR02169 377 DKEFAETRDELK-DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG----IEAKINELEEEKEDKALEIK 451
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2462546316 1217 EAEEEidrLESSKKKLQRELEEQMDMNE---HLQGQLNSMKKDLSRLKK 1262
Cdd:TIGR02169 452 KQEWK---LEQLAADLSKYEQELYDLKEeydRVEKELSKLQRELAEAEA 497
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
561-1103 |
1.84e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.51 E-value: 1.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 561 NYLKEGSTDNDDATKRKVNLVFEKIQTLKsraagsaQGNNQACNSTSEVKDLLEQKSKLTIEVAELQRQLQLEvKNQQNI 640
Cdd:TIGR04523 152 KELEKLNNKYNDLKKQKEELENELNLLEK-------EKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLE-SQISEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 641 KEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRS 720
Cdd:TIGR04523 224 KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 721 EDRE-KGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEvSSHDQEMDKLKEQYDAELQALRESVEEA 799
Cdd:TIGR04523 304 KEQDwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS-ESENSEKQRELEEKQNEIEKLKKENQSY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 800 TKNVEVLASRSNT-------SEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGE 872
Cdd:TIGR04523 383 KQEIKNLESQINDleskiqnQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNT 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 873 IRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENerwhlgktiEK 952
Cdd:TIGR04523 463 RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES---------EK 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 953 LQKEmadiveaSRTSTLElqnqldeykeknrRELAEMQRQLKEKTLEAEKSrltamKMQDEMRLMEEELRDYQRAQDEAL 1032
Cdd:TIGR04523 534 KEKE-------SKISDLE-------------DELNKDDFELKKENLEKEID-----EKNKEIEELKQTQKSLKKKQEEKQ 588
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 1033 TKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRN 1103
Cdd:TIGR04523 589 ELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRN 659
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
837-1238 |
3.80e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 3.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 837 RSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLE---------EALVHARKEEKEAVSAR----RALENELEA 903
Cdd:PRK03918 142 ESDESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEkfikrteniEELIKEKEKELEEVLREineiSSELPELRE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 904 AQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTST---------LELQNQ 974
Cdd:PRK03918 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelkekaeeyIKLSEF 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 975 LDEYKEKNRR----------ELAEMQRQLKEktLEAEKSRLTAMK-----MQDEMRLMEEELRDYQRA-----QDEALTK 1034
Cdd:PRK03918 302 YEEYLDELREiekrlsrleeEINGIEERIKE--LEEKEERLEELKkklkeLEKRLEELEERHELYEEAkakkeELERLKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1035 RqLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISR----SREQMEQVRNELLQE-R 1109
Cdd:PRK03918 380 R-LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKELLEEyT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1110 AARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVV-QMEARIAELEDRLES---EERDRANlqlsnrRLERKVKE 1185
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkELAEQLKELEEKLKKynlEELEKKA------EEYEKLKE 532
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 2462546316 1186 LVMQVDDEHLSLtdqKDQLSlRLKAMKRQVEEAEEEIDRLESSKKKLQRELEE 1238
Cdd:PRK03918 533 KLIKLKGEIKSL---KKELE-KLEELKKKLAELEKKLDELEEELAELLKELEE 581
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
574-1287 |
5.19e-11 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 67.38 E-value: 5.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 574 TKRKVNLVF-EKIQTLKSRAAGSAQGNNQACnstsEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLE 652
Cdd:TIGR00606 190 TLRQVRQTQgQKVQEHQMELKYLKQYKEKAC----EIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIM 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 653 EL-------RSQHNEKVEENSTLQQRLEESEGELRKNLEELFqvkmerEQHQTEIRDLQDQLSEMHDELDSakrsEDREK 725
Cdd:TIGR00606 266 KLdneikalKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLY------HNHQRTVREKERELVDCQRELEK----LNKER 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 726 GALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMD-KLKEQYDAELQALRESVEEATKNVE 804
Cdd:TIGR00606 336 RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSErQIKNFHTLVIERQEDEAKTAAQLCA 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 805 VLASRSNTSEQdqAGTEMRVKLlQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEAlvhAR 884
Cdd:TIGR00606 416 DLQSKERLKQE--QADEIRDEK-KGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAEREL---SK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 885 KEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMAdiveaS 964
Cdd:TIGR00606 490 AEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELT-----S 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 965 RTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKrQLLEQTLKD 1044
Cdd:TIGR00606 565 LLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGS-QDEESDLER 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1045 LEYELEAKSHlkdDRSRLVKQmEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQE-RAARQDLECDKISLE 1123
Cdd:TIGR00606 644 LKEEIEKSSK---QRAMLAGA-TAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKlRLAPDKLKSTESELK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1124 RQNKDLKSRIIHLEGsyrssKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTD---- 1199
Cdd:TIGR00606 720 KKEKRRDEMLGLAPG-----RQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDvtim 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1200 ---------------------QKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLS 1258
Cdd:TIGR00606 795 erfqmelkdverkiaqqaaklQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKL 874
|
730 740
....*....|....*....|....*....
gi 2462546316 1259 RLKKLPSKVLDDMDDDDDLSTDGGSLYEA 1287
Cdd:TIGR00606 875 QIGTNLQRRQQFEEQLVELSTEVQSLIRE 903
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
839-1053 |
8.24e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 65.56 E-value: 8.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 839 EELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEekeavsaRRALENELEAAQGNLSQTTQEQKQL 918
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-------IRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 919 SEKLKEESEQ-KEQLRRLKNEMENERWHLG------KTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKnRRELAEMQR 991
Cdd:COG4942 96 RAELEAQKEElAELLRALYRLGRQPPLALLlspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAAL-RAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 992 QLKE--KTLEAEKSRLTAMK--MQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKS 1053
Cdd:COG4942 175 ELEAllAELEEERAALEALKaeRQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
678-1261 |
9.06e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.53 E-value: 9.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 678 ELRKNLEELFQVKMEREQHQTEIRDLQDQLsemhdeldsaKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRE 757
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQE----------LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 758 RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESveeatknvevlasrsntseqdqagtEMRVKLLQEENEKLQGR 837
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEE-------------------------EKEKKLQEEELKLLAKE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 838 SEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQ 917
Cdd:pfam02463 295 EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 918 LSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEmadiveasrtstleLQNQLDEYKEKNRRELAEM-------- 989
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL--------------ARQLEDLLKEEKKEELEILeeeeesie 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 990 -------QRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHL---KDDR 1059
Cdd:pfam02463 441 lkqgkltEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLaliKDGV 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1060 SRLVKQMEDKVSQLEMELE-EERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEG 1138
Cdd:pfam02463 521 GGRIISAHGRLGDLGVAVEnYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEID 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1139 SYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEA 1218
Cdd:pfam02463 601 PILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQE 680
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 2462546316 1219 EEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLK 1261
Cdd:pfam02463 681 LQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELL 723
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
692-904 |
1.08e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 65.17 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 692 EREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGAL------IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKG 765
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLaalerrIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 ALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRV 845
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462546316 846 AQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAA 904
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
583-1256 |
1.29e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 66.22 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 583 EKIQTLKSRAAGSAQGNNQACNSTSevKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKV 662
Cdd:TIGR00606 341 EKTELLVEQGRLQLQADRHQEHIRA--RDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 663 EENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEdrekgaliEELLQAKQDLQdl 742
Cdd:TIGR00606 419 SKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELD--------QELRKAERELS-- 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 743 LIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQ--DQAGT 820
Cdd:TIGR00606 489 KAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDEltSLLGY 568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 821 EMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHA-------------RKEE 887
Cdd:TIGR00606 569 FPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVcgsqdeesdlerlKEEI 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 888 KEAVSARRALENELEAAQGNLSQTTQEQK----------QLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEM 957
Cdd:TIGR00606 649 EKSSKQRAMLAGATAVYSQFITQLTDENQsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEM 728
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 958 ADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRqLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQL 1037
Cdd:TIGR00606 729 LGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR-LKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERK 807
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1038 LEQTLKDLEyeleakshlKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVR---NELLQERAARQD 1114
Cdd:TIGR00606 808 IAQQAAKLQ---------GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKsktNELKSEKLQIGT 878
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1115 LECDKISLERQNKDLKSRIIHLEGSYRSSKEglvvQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEH 1194
Cdd:TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKE----QDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIH 954
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462546316 1195 LSLTD-----------QKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKD 1256
Cdd:TIGR00606 955 GYMKDienkiqdgkddYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRE 1027
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
829-1261 |
1.74e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 65.56 E-value: 1.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 829 EENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHArkeekEAVSARRALENELEAAQGNL 908
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL-----PLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 909 SQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKN---RRE 985
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELeelEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 986 LAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQ 1065
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1066 MEDKVSQLEME-----LEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNkdlksrIIHLEGsy 1140
Cdd:COG4717 309 ALPALEELEEEeleelLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAA------LLAEAG-- 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1141 rsskeglvVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHL-SLTDQKDQLSLRLKAMKRQVEEAE 1219
Cdd:COG4717 381 --------VEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEeELEEELEELEEELEELEEELEELR 452
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 2462546316 1220 EEIDRLESSKKKL--QRELEEQMDMNEHLQGQLNSMKKDLSRLK 1261
Cdd:COG4717 453 EELAELEAELEQLeeDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
879-1111 |
2.19e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.01 E-value: 2.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 879 ALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMA 958
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 959 diveasrtstlELQNQLDEYKEKNRRELAEMQRQLKEKTLE-------AEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031
Cdd:COG4942 94 -----------ELRAELEAQKEELAELLRALYRLGRQPPLAlllspedFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAA 1111
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
663-909 |
2.35e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.01 E-value: 2.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 663 EENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAkrseDREKGALIEELLQAKQDLQDL 742
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL----EQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 743 LIAKEEQEDLLRKREREL--TALKGALKEEVSSHD-QEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQag 819
Cdd:COG4942 96 RAELEAQKEELAELLRALyrLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER-- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 820 temrvKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALvhARKEEKEAVSARRALEN 899
Cdd:COG4942 174 -----AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI--ARLEAEAAAAAERTPAA 246
|
250
....*....|
gi 2462546316 900 ELEAAQGNLS 909
Cdd:COG4942 247 GFAALKGKLP 256
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
826-1255 |
2.69e-10 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 64.76 E-value: 2.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 826 LLQEENEKLQgrsEELERRVAQLQRqiedlkgdEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQ 905
Cdd:pfam05557 11 LSQLQNEKKQ---MELEHKRARIEL--------EKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 906 GNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQkemadiveASRTSTLELQNQLDEYKEKnrre 985
Cdd:pfam05557 80 LKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQ--------STNSELEELQERLDLLKAK---- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 986 LAEMQrQLKEKTLEAEKSRLTAmkmqdEMRLMEEELRDYQRAQDEALTK----RQL----LEQTLKDLEYELEAKSHLKD 1057
Cdd:pfam05557 148 ASEAE-QLRQNLEKQQSSLAEA-----EQRIKELEFEIQSQEQDSEIVKnsksELAripeLEKELERLREHNKHLNENIE 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1058 DRSRLVKQMEDKVSQLEME--LEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIH 1135
Cdd:pfam05557 222 NKLLLKEEVEDLKRKLEREekYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSS 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1136 LEGSYRsSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVD---------DEHLSLTDQKDQLSL 1206
Cdd:pfam05557 302 LTSSAR-QLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDgyrailesyDKELTMSNYSPQLLE 380
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 2462546316 1207 RLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKK 1255
Cdd:pfam05557 381 RIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQ 429
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
614-863 |
3.37e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 3.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNleelfqvKMER 693
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL-------EKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 694 EQHQTEIRDLQDQLSEMhdeLDSAKRSEDREKGALI------EELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGAL 767
Cdd:COG4942 93 AELRAELEAQKEELAEL---LRALYRLGRQPPLALLlspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 768 KEEVsshdQEMDKLKEQYDAELQALRESVEEATKNVEVLasrsntsEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQ 847
Cdd:COG4942 170 EAER----AELEALLAELEEERAALEALKAERQKLLARL-------EKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
250
....*....|....*.
gi 2462546316 848 LQRQIEDLKGDEAKAK 863
Cdd:COG4942 239 AAERTPAAGFAALKGK 254
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
623-943 |
5.82e-10 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 63.99 E-value: 5.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 623 VAELQRQLQLEVKNQQNIKEERERM------RANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQH 696
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQEKEEKareverRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 697 QTEIRDLQDQLSEMHdELDSAKRSEDREKGALIEELLQAKQdlqdlliAKEEQEDLLRKRERELTALKGALKEEVSSHDQ 776
Cdd:pfam17380 364 RIRQEEIAMEISRMR-ELERLQMERQQKNERVRQELEAARK-------VKILEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 777 EMDKLKEQYDAELQALRESVEEATKNVEVLasrsntseQDQAGTEMRVKLLQEENEKLQGRSEELERRVaqLQRQIEDLK 856
Cdd:pfam17380 436 EVRRLEEERAREMERVRLEEQERQQQVERL--------RQQEEERKRKKLELEKEKRDRKRAEEQRRKI--LEKELEERK 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 857 GDEAKAKETLKKYEGEIRQLEEALvhARKEEKEAVSARRALENELEaaqgnlsqttqEQKQLSEKLKEESEQKEQLRRLK 936
Cdd:pfam17380 506 QAMIEEERKRKLLEKEMEERQKAI--YEEERRREAEEERRKQQEME-----------ERRRIQEQMRKATEERSRLEAME 572
|
....*..
gi 2462546316 937 NEMENER 943
Cdd:pfam17380 573 REREMMR 579
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
610-1052 |
6.83e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.98 E-value: 6.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 610 KDLLEQKSKLTIEVAELQRQLqlevkNQQNIkeERERMRANLEELRSQ--------------HNEKVEENSTLQQRLEES 675
Cdd:pfam15921 401 KRLWDRDTGNSITIDHLRREL-----DDRNM--EVQRLEALLKAMKSEcqgqmerqmaaiqgKNESLEKVSSLTAQLEST 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 676 EGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDsAKRSEDREKGALIEELLQAKQDLQDlliakeeQEDLLRK 755
Cdd:pfam15921 474 KEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIE-ATNAEITKLRSRVDLKLQELQHLKN-------EGDHLRN 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 756 RERELTALKGALKEEvsshdqemdklkeqyDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQ 835
Cdd:pfam15921 546 VQTECEALKLQMAEK---------------DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFK 610
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 836 GRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQ 915
Cdd:pfam15921 611 ILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEM 690
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 916 KQLSEKLKEE----SEQKEQLRRLKNEMENERWHLGKTIEKLQKEMA-------------DIVEASRTSTLELQNQLDEY 978
Cdd:pfam15921 691 ETTTNKLKMQlksaQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITakrgqidalqskiQFLEEAMTNANKEKHFLKEE 770
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 979 KEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEEL--RDYQRAQDEALTKRQLLEQTLKDLEYELEAK 1052
Cdd:pfam15921 771 KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALdkASLQFAECQDIIQRQEQESVRLKLQHTLDVK 846
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1005-1255 |
7.91e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.78 E-value: 7.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1005 LTAMKMQDEMRLMEEELRDYQRAQDEALTKRQlleqtlkdleyELEAKSHLKDDRSRLVKQMEDKvsqleMELEEERNNS 1084
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLERAHEALEDARE-----------QIELLEPIRELAERYAAARERL-----AELEYLRAAL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1085 DLLserisRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKeGlvvqmeARIAELEDRLES 1164
Cdd:COG4913 282 RLW-----FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNG-G------DRLEQLEREIER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1165 EERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEqmdmne 1244
Cdd:COG4913 350 LERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE------ 423
|
250
....*....|.
gi 2462546316 1245 hLQGQLNSMKK 1255
Cdd:COG4913 424 -LEAEIASLER 433
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
663-1051 |
1.11e-09 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 62.01 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 663 EENSTLQQRLEESEGELR--KNLEELF--------QVKMEREQHQTEIRDLQDQLSEMHDELDSAKRsedrEKGALIEEL 732
Cdd:pfam19220 3 QRNELLRVRLGEMADRLEdlRSLKADFsqliepieAILRELPQAKSRLLELEALLAQERAAYGKLRR----ELAGLTRRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 733 LQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEvSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNT 812
Cdd:pfam19220 79 SAAEGELEELVARLAKLEAALREAEAAKEELRIELRDK-TAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 813 SEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEI---RQLEEALVHARKEEKE 889
Cdd:pfam19220 158 AEGELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQLaaeQAERERAEAQLEEAVE 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 890 AVSARRA-LENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEmadiVEASRTST 968
Cdd:pfam19220 238 AHRAERAsLRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEAD----LERRTQQF 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 969 LELQNQLDEYKEknRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEmrlmeeelrdyqRAQDEALTKRQLLEQTLKDLEYE 1048
Cdd:pfam19220 314 QEMQRARAELEE--RAEMLTKALAAKDAALERAEERIASLSDRIA------------ELTKRFEVERAALEQANRRLKEE 379
|
...
gi 2462546316 1049 LEA 1051
Cdd:pfam19220 380 LQR 382
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
615-1262 |
1.94e-09 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 62.40 E-value: 1.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 615 QKSKLTIEVAELQRQLQLEVKNQQNIKEerermranleelrSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEre 694
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRE-------------TEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYL-- 871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 695 QHQTEIRDLQDQLSEMHDELDSAKRSEDREKGaLIEELLQAKQDLQDLLIAKEEQedllrkRERELTALKGALKEEVSSH 774
Cdd:COG5022 872 QSAQRVELAERQLQELKIDVKSISSLKLVNLE-LESEIIELKKSLSSDLIENLEF------KTELIARLKKLLNNIDLEE 944
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 775 DQEMDKLKEQYDAELQ----ALRESVEE---ATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQ 847
Cdd:COG5022 945 GPSIEYVKLPELNKLHevesKLKETSEEyedLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVE 1024
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 848 LQR--QIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKeAVSARRalENELEAAQGNLSQTTQEQKQLSEKLKEE 925
Cdd:COG5022 1025 VAElqSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYK-ALKLRR--ENSLLDDKQLYQLESTENLLKTINVKDL 1101
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 926 SEQKEQLRRLKNEMENERWHLGKTIEKLQKEmadiveasrtSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRL 1005
Cdd:COG5022 1102 EVTNRNLVKPANVLQFIVAQMIKLNLLQEIS----------KFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSP 1171
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1006 TAMKMQDEMRLMEEELRDyqraqdealTKRQLLEQTLKDLEYELEakSHLKDDRSRLVKQMEDKVSQLE--------MEL 1077
Cdd:COG5022 1172 PPFAALSEKRLYQSALYD---------EKSKLSSSEVNDLKNELI--ALFSKIFSGWPRGDKLKKLISEgwvpteysTSL 1240
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1078 EEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLE-----CDKISLERQNKDLKSRIIHLEGSYRSSkegLVVQME 1152
Cdd:COG5022 1241 KGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEevlpaTINSLLQYINVGLFNALRTKASSLRWK---SATEVN 1317
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1153 ARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQvDDEHLS--LTDQKDQLSLRLKAMKRQVEEAEEE-------ID 1223
Cdd:COG5022 1318 YNSEELDDWCREFEISDVDEELEELIQAVKVLQLLKD-DLNKLDelLDACYSLNPAEIQNLKSRYDPADKEnnlpkeiLK 1396
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 2462546316 1224 RLESS--KKKLQRELEEQMDMNEHLQgQLNSMKKDLSRLKK 1262
Cdd:COG5022 1397 KIEALliKQELQLSLEGKDETEVHLS-EIFSEEKSLISLDR 1436
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
749-970 |
2.05e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.93 E-value: 2.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 749 QEDLLRKRERELTALKGALKEEvsshDQEMDKLKEQYDA---ELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVK 825
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAEL----EKELAALKKEEKAllkQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 826 LLQEEnekLQGRSEELERRVAQLQR--QIEDLK--------GDEAKAKETLKKYEGEIRQLEEALVHARKE----EKEAV 891
Cdd:COG4942 94 ELRAE---LEAQKEELAELLRALYRlgRQPPLAlllspedfLDAVRRLQYLKYLAPARREQAEELRADLAElaalRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 892 SARRALE---NELEAAQGNLSQTTQEQKQLSEKL-KEESEQKEQLRRLKNEMENerwhLGKTIEKLQKEMADIVEASRTS 967
Cdd:COG4942 171 AERAELEallAELEEERAALEALKAERQKLLARLeKELAELAAELAELQQEAEE----LEALIARLEAEAAAAAERTPAA 246
|
...
gi 2462546316 968 TLE 970
Cdd:COG4942 247 GFA 249
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
597-1209 |
2.28e-09 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 61.76 E-value: 2.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 597 QGNNQACNSTSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERmranleelRSQHNEKVEENSTLQQRLEESE 676
Cdd:pfam10174 168 QSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHR--------RNQLQPDPAKTKALQTVIEMKD 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 677 GELrknleelfqVKMEReqhqtEIRDLQDQLseMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEdlLRKR 756
Cdd:pfam10174 240 TKI---------SSLER-----NIRDLEDEV--QMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQE--LSKK 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 757 ERELTALKGALK---EEVSSHDQEMDKLKEQYDAELQalresvEEATKNVEVLASRSNTSEQDQAGTEMRVKL--LQEEN 831
Cdd:pfam10174 302 ESELLALQTKLEtltNQNSDCKQHIEVLKESLTAKEQ------RAAILQTEVDALRLRLEEKESFLNKKTKQLqdLTEEK 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 832 EKLQGRSEEL-------ERRVAQLQRQIEDLkgdeakaKETLKKYEGEIRQLeealvharkeeKEAVSARRALENELEAA 904
Cdd:pfam10174 376 STLAGEIRDLkdmldvkERKINVLQKKIENL-------QEQLRDKDKQLAGL-----------KERVKSLQTDSSNTDTA 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 905 QGNLSQTTQEQKQLSEKLKEESEQKEQLRRlkNEMENERWHLGKTIEKLQKEMADIVEASrTSTLELQN----------- 973
Cdd:pfam10174 438 LTTLEEALSEKERIIERLKEQREREDRERL--EELESLKKENKDLKEKVSALQPELTEKE-SSLIDLKEhasslassglk 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 974 ------QLDEYKEKNRRELAEMQRQLKeKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEY 1047
Cdd:pfam10174 515 kdsklkSLEIAVEQKKEECSKLENQLK-KAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVEN 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1048 ELEAK----SHLKDDRSRLVKQMEDKVSQLE-MELEEERNNSDLLSERISRSREQMEQVRNELLQERAA-----RQDLEC 1117
Cdd:pfam10174 594 EKNDKdkkiAELESLTLRQMKEQNKKVANIKhGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEELMGalektRQELDA 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1118 DKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRlERKVKELVMQVDDEHLSL 1197
Cdd:pfam10174 674 TKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAAISEKDANIALLELSSSK-KKKTQEEVMALKREKDRL 752
|
650
....*....|...
gi 2462546316 1198 TDQ-KDQLSLRLK 1209
Cdd:pfam10174 753 VHQlKQQTQNRMK 765
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
974-1261 |
2.84e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 2.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 974 QLDEYKEKNRRELAEMQRQLkektleaeksrltamkmqDEMRLMEEELRD-YQRAQDEALTKRQLLEQTLKDLEYELEAK 1052
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENI------------------ERLDLIIDEKRQqLERLRREREKAERYQALLKEKREYEGYEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1053 SHLKDDRSRLVKQMEDKVSQLEMELEEernnsdlLSERISRSREQMEQVRNELLQERAARQDL-ECDKISLERQNKDLKS 1131
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEK-------LTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEA 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1132 RIIHLEGSYRSSKEGLVvQMEARIAELEDRLESEERDRANL---QLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRL 1208
Cdd:TIGR02169 302 EIASLERSIAEKERELE-DAEERLAKLEAEIDKLLAEIEELereIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2462546316 1209 KAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLK 1261
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
697-1225 |
2.87e-09 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 61.30 E-value: 2.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 697 QTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSH-- 774
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNrl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 775 ----DQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQR 850
Cdd:pfam05557 81 kkkyLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 851 QIEDLKGDEAKAKE---TLKKYEGEIRQLEEALVH-ARKEEKEAVSARRALENE-LEAAQGNLSQTTQEQKQLSEKLKEE 925
Cdd:pfam05557 161 QQSSLAEAEQRIKElefEIQSQEQDSEIVKNSKSElARIPELEKELERLREHNKhLNENIENKLLLKEEVEDLKRKLERE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 926 SEQKEQLRRLknEMENER-------WH---------------LGKTIEKLQKEMADIVEASRTSTLELQNqldeyKEKNR 983
Cdd:pfam05557 241 EKYREEAATL--ELEKEKleqelqsWVklaqdtglnlrspedLSRRIEQLQQREIVLKEENSSLTSSARQ-----LEKAR 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 984 RELAEMQRQLKEKTLEAEKSRLT----AMKMQDEMRLMEEElRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDR 1059
Cdd:pfam05557 314 RELEQELAQYLKKIEDLNKKLKRhkalVRRLQRRVLLLTKE-RDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKM 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1060 SRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQE-----RAARQDLECDKISLERQNKDLKSRII 1134
Cdd:pfam05557 393 QAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEevdslRRKLETLELERQRLREQKNELEMELE 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1135 H--LEGSYRSSKEGlVVQMEARIAELEDRLESEERDRanLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMK 1212
Cdd:pfam05557 473 RrcLQGDYDPKKTK-VLHLSMNPAAEAYQQRKNQLEK--LQAEIERLKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLR 549
|
570
....*....|...
gi 2462546316 1213 RQVEEAEEEIDRL 1225
Cdd:pfam05557 550 KELESAELKNQRL 562
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
531-1177 |
3.00e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 61.66 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 531 SNTQATPDLLKGQQELTQQTNEETAKQILYnyLKEGSTDNDDATKRKvNLVFEKIQTLKSRAAGSAQGNNQACNSTSEVK 610
Cdd:pfam05483 106 NKLQENRKIIEAQRKAIQELQFENEKVSLK--LEEEIQENKDLIKEN-NATRHLCNLLKETCARSAEKTKKYEYEREETR 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 611 ----DLLEQKSKLTIEVAELQRQLQ-LEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELrKNLEE 685
Cdd:pfam05483 183 qvymDLNNNIEKMILAFEELRVQAEnARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKM-KDLTF 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 686 LFQVKMEREQHQTEIRDLQDQ------------LSEMHDELDSAKRSEDREKgALIEELLQAKQDLQDLLIAKEEQEDLL 753
Cdd:pfam05483 262 LLEESRDKANQLEEKTKLQDEnlkeliekkdhlTKELEDIKMSLQRSMSTQK-ALEEDLQIATKTICQLTEEKEAQMEEL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 754 RKRE-------RELTALKGALKEEVSSHDQEMDKLKEQYD---AELQALRESVEEATK---NVEVLASRSNTSEQDQAGT 820
Cdd:pfam05483 341 NKAKaahsfvvTEFEATTCSLEELLRTEQQRLEKNEDQLKiitMELQKKSSELEEMTKfknNKEVELEELKKILAEDEKL 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 821 EMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENE 900
Cdd:pfam05483 421 LDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLE 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 901 LEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMadiveasRTSTLELQNQLDEYKE 980
Cdd:pfam05483 501 NKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEF-------IQKGDEVKCKLDKSEE 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 981 KNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLL---EQTLKDLEYELE-AKSHLK 1056
Cdd:pfam05483 574 NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLnayEIKVNKLELELAsAKQKFE 653
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1057 DDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERA--ARQDLECDKISLERQNK-DLKSRI 1133
Cdd:pfam05483 654 EIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVAlmEKHKHQYDKIIEERDSElGLYKNK 733
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 2462546316 1134 IHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNR 1177
Cdd:pfam05483 734 EQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
660-1225 |
3.19e-09 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 61.46 E-value: 3.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 660 EKVEENSTLqqrLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLsemhDELDSAKRSEDREKGALIEELLQAKQDL 739
Cdd:PRK01156 162 NSLERNYDK---LKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQI----ADDEKSHSITLKEIERLSIEYNNAMDDY 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 740 QDLLIAKEE---QEDLLRKRERELTALKGALK---EEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASR---- 809
Cdd:PRK01156 235 NNLKSALNElssLEDMKNRYESEIKTAESDLSmelEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKkqil 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 810 SNTSEQDQAGTEMRVKLlqEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEE----------- 878
Cdd:PRK01156 315 SNIDAEINKYHAIIKKL--SVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEyskniermsaf 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 879 ---ALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQL------------------RRLKN 937
Cdd:PRK01156 393 iseILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLngqsvcpvcgttlgeeksNHIIN 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 938 EMENERWHLGKTIEKLQKEMADIVEASRtstlELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLM 1017
Cdd:PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIV----DLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKY 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1018 EEELRDYQRAQDEALTKRQllEQTLKDLEY----ELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISR 1093
Cdd:PRK01156 549 EEIKNRYKSLKLEDLDSKR--TSWLNALAVisliDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIEN 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1094 SREQMEQVRNELLQERAARQdlecdkiSLERQNKDLKSRIIHLEGSYRSSKEglvvqMEARIAELEDRLESEERDRANLQ 1173
Cdd:PRK01156 627 EANNLNNKYNEIQENKILIE-------KLRGKIDNYKKQIAEIDSIIPDLKE-----ITSRINDIEDNLKKSRKALDDAK 694
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 2462546316 1174 LSNRRLERKVKELVMQVDDehlsLTDQKDQLSLRLKAMKRqVEEAEEEIDRL 1225
Cdd:PRK01156 695 ANRARLESTIEILRTRINE----LSDRINDINETLESMKK-IKKAIGDLKRL 741
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
539-1134 |
4.06e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.14 E-value: 4.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 539 LLKGQQELTQQTNEETAKQILYNYLKEGSTDNDDATKRKVNLVFEKIQTLKSRAAGSAQGNNQACNSTSEVKDLLEQKSK 618
Cdd:pfam02463 440 ELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDG 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 619 LTIEVAELQRQLqlevKNQQNIKEERERMR-ANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQ 697
Cdd:pfam02463 520 VGGRIISAHGRL----GDLGVAVENYKVAIsTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIA 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 698 TEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQE 777
Cdd:pfam02463 596 VLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 778 MDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQdqagtemrvKLLQEENEKLQGRSEELERRvAQLQRQIEDLKG 857
Cdd:pfam02463 676 LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELK---------KLKLEAEELLADRVQEAQDK-INEELKLLKQKI 745
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 858 DEAKAKETLKKYEGEIRQLEEALVharkEEKEAVSARRALENELEAAQGNlsQTTQEQKQLSEKLKEESEQKEQLRRLKN 937
Cdd:pfam02463 746 DEEEEEEEKSRLKKEEKEEEKSEL----SLKEKELAEEREKTEKLKVEEE--KEEKLKAQEEELRALEEELKEEAELLEE 819
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 938 EMENERWHLGKTIEKLQKEMADIVEASRtstLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRL- 1016
Cdd:pfam02463 820 EQLLIEQEEKIKEEELEELALELKEEQK---LEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEk 896
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1017 MEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSRE 1096
Cdd:pfam02463 897 EEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVN 976
|
570 580 590
....*....|....*....|....*....|....*...
gi 2462546316 1097 QMEQVRNELLQERaaRQDLECDKISLERQNKDLKSRII 1134
Cdd:pfam02463 977 LMAIEEFEEKEER--YNKDELEKERLEEEKKKLIRAII 1012
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
610-1259 |
4.08e-09 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 61.51 E-value: 4.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 610 KDLLEQKSKLTIE---VAELQRQLQLEVKNQQNIKEERERMRANLEELRS--QHNEKVE----ENSTLQQRLEESEGELR 680
Cdd:COG3096 292 RELFGARRQLAEEqyrLVEMARELEELSARESDLEQDYQAASDHLNLVQTalRQQEKIEryqeDLEELTERLEEQEEVVE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 681 KNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALiEELLQAKQ--DLQDLLI--AKEEQEDLlRKR 756
Cdd:COG3096 372 EAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAV-QALEKARAlcGLPDLTPenAEDYLAAF-RAK 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 757 ERELTALKGALKEEVSshdqEMDKLKEQYDAELQALRESVEEATKN------VEVLasRSNTSEQDQAGTEmrvkllqee 830
Cdd:COG3096 450 EQQATEEVLELEQKLS----VADAARRQFEKAYELVCKIAGEVERSqawqtaRELL--RRYRSQQALAQRL--------- 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 831 nEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEAlvHARKEEkeavsarraLENELEAAQGNLSQ 910
Cdd:COG3096 515 -QQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAEL--EAQLEE---------LEEQAAEAVEQRSE 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 911 TTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKemadiVEASRTSTLELQNQLdeykEKNRRELAEMQ 990
Cdd:COG3096 583 LRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQE-----VTAAMQQLLEREREA----TVERDELAARK 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 991 RQLKEKTLE------AEKSRLTAMKMQDEMRLMEEELRD-------YQRA-----------QDEALTKRQL--LEQTLKD 1044
Cdd:COG3096 654 QALESQIERlsqpggAEDPRLLALAERLGGVLLSEIYDDvtledapYFSAlygparhaivvPDLSAVKEQLagLEDCPED 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1045 LeYELEAKSHLKDDRSRLVKQMED----KVSQLEM------------------ELEEERNNSDLLSERISRSR-EQMEQV 1101
Cdd:COG3096 734 L-YLIEGDPDSFDDSVFDAEELEDavvvKLSDRQWrysrfpevplfgraarekRLEELRAERDELAEQYAKASfDVQKLQ 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1102 R----------------------NELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYrSSKEGLVVQM-------- 1151
Cdd:COG3096 813 RlhqafsqfvgghlavafapdpeAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQL-QLLNKLLPQAnlladetl 891
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1152 EARIAELEDRLESEERDRANLQLSNRRLERKVKEL-VMQVDDE-HLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLES-S 1228
Cdd:COG3096 892 ADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVaVLQSDPEqFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHfS 971
|
730 740 750
....*....|....*....|....*....|.
gi 2462546316 1229 KKKLQRELEEQMDMNEHLQGQLNSMKKDLSR 1259
Cdd:COG3096 972 YEDAVGLLGENSDLNEKLRARLEQAEEARRE 1002
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
828-1258 |
4.09e-09 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 61.47 E-value: 4.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 828 QEENEKLQGRSEELERRVAQLQRQIEDLKGDEAK-AKETLKKYegEIRQLEEALVHARKEEKEAVSARRALENELEAAQg 906
Cdd:PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEeTRETLSTL--SLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQ- 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 907 nlSQTTQEQKQLSEKlkeeSEQKEQLR-RLKNEMENERWHLGKTIEKLQKEMAdiveasrtsTLELQNQLdeykeknRRE 985
Cdd:PRK11281 156 --TQPERAQAALYAN----SQRLQQIRnLLKGGKVGGKALRPSQRVLLQAEQA---------LLNAQNDL-------QRK 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 986 LAEMQRQLKEkTLEAEKSRLTAmkmqdEMRLMEEELRDYQRAQDEaltKR-QLLEQTLKDLEyELEAKSHLKDDrsRLVK 1064
Cdd:PRK11281 214 SLEGNTQLQD-LLQKQRDYLTA-----RIQRLEHQLQLLQEAINS---KRlTLSEKTVQEAQ-SQDEAARIQAN--PLVA 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1065 QmedkvsQLEMELEeernnsdlLSERISRSREQMeqvrNELLQER-AARQDLEcdkiSLERQNKDLKSRIIHLEGSYRSS 1143
Cdd:PRK11281 282 Q------ELEINLQ--------LSQRLLKATEKL----NTLTQQNlRVKNWLD----RLTQSERNIKEQISVLKGSLLLS 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1144 K-----------EGLVVQMEARIAELedRLE----SEERDranlQLSN-----RRLERKVKELVmqVDDEHLSLTD---- 1199
Cdd:PRK11281 340 RilyqqqqalpsADLIEGLADRIADL--RLEqfeiNQQRD----ALFQpdayiDKLEAGHKSEV--TDEVRDALLQllde 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1200 -QK--DQLSLRLKAmkrQVEEA-EEEIDR--LESSKKKLQRELEEQ---------MDMN------EHLQGQLNSMKKDLS 1258
Cdd:PRK11281 412 rREllDQLNKQLNN---QLNLAiNLQLNQqqLLSVSDSLQSTLTQQifwvnsnkpMDLDwlkafpQALKDQFKSLKITVS 488
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
637-881 |
4.80e-09 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 60.80 E-value: 4.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 637 QQNIKEERERMRANLEELRSQhnekVEEnstLQQRLEESEGELR--KNLEELFQVKMEREQHQTEIRDLQDQLSEMHDEL 714
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQ----LPE---LRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 715 DSAKRSEDREKGALIEELLQAKQDLQDLLIAK-EEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALR 793
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQSPVIQQlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 794 ESVEeatKNVEVLASRSNTSEQDQAGTEMRVKLLQEenekLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEI 873
Cdd:COG3206 316 ASLE---AELEALQAREASLQAQLAQLEARLAELPE----LEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNV 388
|
....*...
gi 2462546316 874 RQLEEALV 881
Cdd:COG3206 389 RVIDPAVV 396
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
651-1102 |
8.89e-09 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 60.35 E-value: 8.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 651 LEELRSQHNEKVEENSTL------QQRLEES-----------------EGELRKNLEELFQVKMEREQHQTEIRDLQDQL 707
Cdd:COG3096 787 LEELRAERDELAEQYAKAsfdvqkLQRLHQAfsqfvgghlavafapdpEAELAALRQRRSELERELAQHRAQEQQLRQQL 866
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 708 SEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALK---GALKEEVSSHDQemdkLKEQ 784
Cdd:COG3096 867 DQLKEQLQLLNKLLPQANLLADETLADRLEELREELDAAQEAQAFIQQHGKALAQLEplvAVLQSDPEQFEQ----LQAD 942
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 785 YDAELQALRESVEEATKNVEVLASRSNTSEQDQAG---------TEMRVKLLQEENEKLQGRS--EELERRVAQLQRQIE 853
Cdd:COG3096 943 YLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGllgensdlnEKLRARLEQAEEARREAREqlRQAQAQYSQYNQVLA 1022
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 854 DLKGDEAKAKETLKKYEGEIRQLE-------EALVHARKEE-KEAVSARRALENELEAAqgnLSQTTQEQKQLSEKLKEE 925
Cdd:COG3096 1023 SLKSSRDAKQQTLQELEQELEELGvqadaeaEERARIRRDElHEELSQNRSRRSQLEKQ---LTRCEAEMDSLQKRLRKA 1099
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 926 SEQKEQLRRLKnEMENERWhlgktieklqkemADIVEASRTSTLElqnqldeyKEKNRRELAEMqrqlkektlEAEKSRL 1005
Cdd:COG3096 1100 ERDYKQEREQV-VQAKAGW-------------CAVLRLARDNDVE--------RRLHRRELAYL---------SADELRS 1148
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1006 TAMKMQDEMRL---MEEELRDYQRAQDEAltkrqllEQTLKDLEYELEAKSHLK----------DDRSRLVKQMEDKVSQ 1072
Cdd:COG3096 1149 MSDKALGALRLavaDNEHLRDALRLSEDP-------RRPERKVQFYIAVYQHLRerirqdiirtDDPVEAIEQMEIELAR 1221
|
490 500 510
....*....|....*....|....*....|...
gi 2462546316 1073 LEMELEEERNNSDLLSE---RISRSREQMEQVR 1102
Cdd:COG3096 1222 LTEELTSREQKLAISSEsvaNIIRKTIQREQNR 1254
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
974-1262 |
9.02e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 9.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 974 QLDEYkEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELrdyqraqDEALTKRQLLEQTLKDLEYELEAKS 1053
Cdd:PRK03918 156 GLDDY-ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKEL-------EEVLREINEISSELPELREELEKLE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1054 HLKDDrsrlVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNEL--LQERAAR-QDLECDK------ISLER 1124
Cdd:PRK03918 228 KEVKE----LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeLEEKVKElKELKEKAeeyiklSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1125 QNKDLKSRIIHLEGSYRSSKEGLVVQMEaRIAELEDRLESEERDRANLQLSNRRLERKVKELvmqvdDEHLSLTDQKDQL 1204
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEERHELY-----EEAKAKKEELERL 377
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462546316 1205 SLRLKAmkRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKK 1262
Cdd:PRK03918 378 KKRLTG--LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
607-1208 |
9.34e-09 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 60.36 E-value: 9.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKN---- 682
Cdd:PRK04863 523 SELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLaara 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 683 --------------------------LEELFQVKMEREQHQTEIRDL----QDQLSEMHDELDSAKRSEDrekgaliEEL 732
Cdd:PRK04863 603 pawlaaqdalarlreqsgeefedsqdVTEYMQQLLERERELTVERDElaarKQALDEEIERLSQPGGSED-------PRL 675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 733 LQAKQDLQDLLIAkEEQEDLLRKRERELTALKGALKEE--VSSHDQEMDKLKEQYD---------AELQALRESVEEATK 801
Cdd:PRK04863 676 NALAERFGGVLLS-EIYDDVSLEDAPYFSALYGPARHAivVPDLSDAAEQLAGLEDcpedlylieGDPDSFDDSVFSVEE 754
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 802 NVEVLASRSNTSEQ-----------DQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGD---------EAK 861
Cdd:PRK04863 755 LEKAVVVKIADRQWrysrfpevplfGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFigshlavafEAD 834
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 862 AKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQT--------TQEQKQLSEKLKEESEQKEQLR 933
Cdd:PRK04863 835 PEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLnlladetlADRVEEIREQLDEAEEAKRFVQ 914
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 934 RlknemenerwhLGKTIEKLQKEMADI-------------VEASRTSTLELQNQLDEYKEKNRR--------------EL 986
Cdd:PRK04863 915 Q-----------HGNALAQLEPIVSVLqsdpeqfeqlkqdYQQAQQTQRDAKQQAFALTEVVQRrahfsyedaaemlaKN 983
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 987 AEMQRQLKEKTLEAEKSRLTAmkmQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKShlkddrsrlvkqm 1066
Cdd:PRK04863 984 SDLNEKLRQRLEQAEQERTRA---REQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG------------- 1047
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1067 edkVSQLEMELEEERNNSDLLSERISRSREQmeqvRNELLQERAarqdlecdkiSLERQNKDLKSRIIHLEGSYRSSKEg 1146
Cdd:PRK04863 1048 ---VPADSGAEERARARRDELHARLSANRSR----RNQLEKQLT----------FCEAEMDNLTKKLRKLERDYHEMRE- 1109
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462546316 1147 LVVQMEARIAELEDRLeseeRDRANLqlsnRRLERkvKELVMQVDDEHLSLTDqKDQLSLRL 1208
Cdd:PRK04863 1110 QVVNAKAGWCAVLRLV----KDNGVE----RRLHR--RELAYLSADELRSMSD-KALGALRL 1160
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
724-1136 |
9.99e-09 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 59.97 E-value: 9.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 724 EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLK------------EQYDAELQA 791
Cdd:PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNlvqtalrqqekiERYQADLEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 792 LRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLkgdeAKAKETLKKYEG 871
Cdd:PRK04863 360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL----ERAKQLCGLPDL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 872 EIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQkqlseklkeeseqkEQLRRLKNEME-NERWHLGKTI 950
Cdd:PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAY--------------QLVRKIAGEVSrSEAWDVAREL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 951 EKlqkemadiveasrtsTLELQNQLDEYKEKNRRELAEMQRQLKEKTlEAEKSRLTAMKMQDEMRLMEEELRDYQRAQde 1030
Cdd:PRK04863 502 LR---------------RLREQRHLAEQLQQLRMRLSELEQRLRQQQ-RAERLLAEFCKRLGKNLDDEDELEQLQEEL-- 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1031 altkrqllEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLS-------ERISRSREQMEQVRN 1103
Cdd:PRK04863 564 --------EARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALArlreqsgEEFEDSQDVTEYMQQ 635
|
410 420 430
....*....|....*....|....*....|...
gi 2462546316 1104 ELLQERAARQdlecDKISLERQNKDLKSRIIHL 1136
Cdd:PRK04863 636 LLERERELTV----ERDELAARKQALDEEIERL 664
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
486-938 |
1.32e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 59.35 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 486 SLGAQSKKEEEVKTATATLMLQNRATATSPDSGAKKISVKTFPSA---SNTQATPDLLKGQQELTQqtNEETAKQILYNY 562
Cdd:pfam05483 308 SMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTefeATTCSLEELLRTEQQRLE--KNEDQLKIITME 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 563 LKEGSTDNDDATKRKVN--LVFEKIQTLKSRAAGSAQGNNQACNSTSEVKD-------LLEQKSKltiEVAELQRQLQLE 633
Cdd:pfam05483 386 LQKKSSELEEMTKFKNNkeVELEELKKILAEDEKLLDEKKQFEKIAEELKGkeqelifLLQAREK---EIHDLEIQLTAI 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 634 VKNQQNIKEERERMRANLE-------ELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQ 706
Cdd:pfam05483 463 KTSEEHYLKEVEDLKTELEkeklkniELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 707 LSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALK-----------------GALKE 769
Cdd:pfam05483 543 EMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKkqienknknieelhqenKALKK 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 770 EVSSHDQEMDKLK---EQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQgrsEELERRVa 846
Cdd:pfam05483 623 KGSAENKQLNAYEikvNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQ---KEIDKRC- 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 847 qlQRQIEDLKGDEAKAKEtlkKYEGEIRQLEEALVHARKEEKEAVSARRALENEleaaqgnLSQTTQEQKQLSEKLKEES 926
Cdd:pfam05483 699 --QHKIAEMVALMEKHKH---QYDKIIEERDSELGLYKNKEQEQSSAKAALEIE-------LSNIKAELLSLKKQLEIEK 766
|
490
....*....|..
gi 2462546316 927 EQKEQLRRLKNE 938
Cdd:pfam05483 767 EEKEKLKMEAKE 778
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
608-1154 |
1.34e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 59.58 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 608 EVKDLLEQKSKLTIEVAELQRQLqlevknqqnikEERERMRANLEELRSQHNEKV-------EENSTLQQRLEESEGELR 680
Cdd:COG3096 506 SQQALAQRLQQLRAQLAELEQRL-----------RQQQNAERLLEEFCQRIGQQLdaaeeleELLAELEAQLEELEEQAA 574
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 681 KNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRsedrekgaLIEELLQAKQDLQDLLIAKEEQEDLLRKRERE- 759
Cdd:COG3096 575 EAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALER--------LREQSGEALADSQEVTAAMQQLLEREREATVEr 646
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 760 --LTALKGALKEEVS-------SHDQEMDKLKEQYDAELqaLRE-----SVEEA-------------------TKNVEVL 806
Cdd:COG3096 647 deLAARKQALESQIErlsqpggAEDPRLLALAERLGGVL--LSEiyddvTLEDApyfsalygparhaivvpdlSAVKEQL 724
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 807 ASRSNT-------------------------------SEQDQ--------------AGTEMRVKLLQEENEKLQGRSEEL 841
Cdd:COG3096 725 AGLEDCpedlyliegdpdsfddsvfdaeeledavvvkLSDRQwrysrfpevplfgrAAREKRLEELRAERDELAEQYAKA 804
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 842 ERRVAQLQR---QIEDLKGD------EAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTT 912
Cdd:COG3096 805 SFDVQKLQRlhqAFSQFVGGhlavafAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQAN 884
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 913 Q-EQKQLSEKLKEESEQKEQLRRLKNEMeneRWHlGKTIEKLQkEMADIVEASRTSTLELQNQLDEYKEKnrrelaemQR 991
Cdd:COG3096 885 LlADETLADRLEELREELDAAQEAQAFI---QQH-GKALAQLE-PLVAVLQSDPEQFEQLQADYLQAKEQ--------QR 951
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 992 QLKEKT--LEAEKSRLTAMKMQDEMRL------MEEELR-DYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDdrSRL 1062
Cdd:COG3096 952 RLKQQIfaLSEVVQRRPHFSYEDAVGLlgensdLNEKLRaRLEQAEEARREAREQLRQAQAQYSQYNQVLASLKS--SRD 1029
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1063 VKQmeDKVSQLEMELEEERNNSDllSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRS 1142
Cdd:COG3096 1030 AKQ--QTLQELEQELEELGVQAD--AEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQ 1105
|
650
....*....|..
gi 2462546316 1143 SKEgLVVQMEAR 1154
Cdd:COG3096 1106 ERE-QVVQAKAG 1116
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
814-1046 |
1.68e-08 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 58.89 E-value: 1.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 814 EQDQAGTEMRVKLLQEENEKLQ-GRSEELErrvaQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEalvharkeekeavs 892
Cdd:pfam05667 309 TNEAPAATSSPPTKVETEEELQqQREEELE----ELQEQLEDLESSIQELEKEIKKLESSIKQVEE-------------- 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 893 arraleneleaaqgnlsqTTQEQKQLSEKLKEESEQKEQLRRLKNEMENerwhlgkTIEKLQKemadIVEASRTSTLELQ 972
Cdd:pfam05667 371 ------------------ELEELKEQNEELEKQYKVKKKTLDLLPDAEE-------NIAKLQA----LVDASAQRLVELA 421
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462546316 973 NQLdeykEKNRRELAEMQRQLKE----KTLEAEKsrltamKMqDEMRLMEEELRDyqrAQDEALTKRQLLEQTLKDLE 1046
Cdd:pfam05667 422 GQW----EKHRVPLIEEYRALKEaksnKEDESQR------KL-EEIKELREKIKE---VAEEAKQKEELYKQLVAEYE 485
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
747-1047 |
1.83e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.16 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 747 EEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAeLQALRESVEEATKNVEVLASRSNTSEQdqagtemrVKL 826
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREA-LQRLAEYSWDEIDVASAEREIAELEAE--------LER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 827 LQEEN---EKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARraLENELEA 903
Cdd:COG4913 680 LDASSddlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL--LEERFAA 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 904 AQGnlsqtTQEQKQLSEKLkeeseqKEQLRRLKNEMENERwhlgktiEKLQKEMADIVEASRTSTLELQNQLDEYkeknr 983
Cdd:COG4913 758 ALG-----DAVERELRENL------EERIDALRARLNRAE-------EELERAMRAFNREWPAETADLDADLESL----- 814
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462546316 984 RELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEY 1047
Cdd:COG4913 815 PEYLALLDRLEEDGLPEYEERFKELLNENSIEFVADLLSKLRRAIREIKERIDPLNDSLKRIPF 878
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
692-1048 |
2.14e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 58.60 E-value: 2.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 692 EREQHQTEIRDLQDQLSEMHDELdsAKRSEDREKGALIEELLQAKQDLQDLLIAkeEQEDLLRKRERELTALKGALKEev 771
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEKEEK--AREVERRRKLEEAEKARQAEMDRQAAIYA--EQERMAMERERELERIRQEERK-- 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 772 sshdQEMDKLKEQYDA-ELQALREsveeaTKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEklqgrseeleRRVAQLQR 850
Cdd:pfam17380 360 ----RELERIRQEEIAmEISRMRE-----LERLQMERQQKNERVRQELEAARKVKILEEERQ----------RKIQQQKV 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 851 QIEDLKGDEAKAKETlkkyegEIRQLEEAlvhaRKEEKEavsarRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKE 930
Cdd:pfam17380 421 EMEQIRAEQEEARQR------EVRRLEEE----RAREME-----RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRD 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 931 QlrrlKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQlKEKTLEAEKsrltamKM 1010
Cdd:pfam17380 486 R----KRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERR-KQQEMEERR------RI 554
|
330 340 350
....*....|....*....|....*....|....*...
gi 2462546316 1011 QDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYE 1048
Cdd:pfam17380 555 QEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
836-1179 |
2.26e-08 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 57.77 E-value: 2.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 836 GRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEAlvHARKEEKEAVsarraLENELEAAQGNLSQTTQEQ 915
Cdd:pfam19220 3 QRNELLRVRLGEMADRLEDLRSLKADFSQLIEPIEAILRELPQA--KSRLLELEAL-----LAQERAAYGKLRRELAGLT 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 916 KQLSEKLKEESEQKEQLRRLKNEMENERwhlgktiekLQKEMADIVEASRTSTLE-LQNQLDEYKEkNRRELAEMQRQLK 994
Cdd:pfam19220 76 RRLSAAEGELEELVARLAKLEAALREAE---------AAKEELRIELRDKTAQAEaLERQLAAETE-QNRALEEENKALR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 995 EKTLEAEKSRLTAMKMQDEMR----LMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDD-----------R 1059
Cdd:pfam19220 146 EEAQAAEKALQRAEGELATARerlaLLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRAlegqlaaeqaeR 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1060 SRLVKQMEDKVSQLE-------MELEE-----------------------------ERNNSDLLSERISRSREqMEQVRN 1103
Cdd:pfam19220 226 ERAEAQLEEAVEAHRaeraslrMKLEAltaraaateqllaearnqlrdrdeairaaERRLKEASIERDTLERR-LAGLEA 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1104 ELLQERAARQDLECDKISLERQ----NKDLKSRIIHLEGSyrsskEGLVVQMEARIAELEDRLESeerDRANLQLSNRRL 1179
Cdd:pfam19220 305 DLERRTQQFQEMQRARAELEERaemlTKALAAKDAALERA-----EERIASLSDRIAELTKRFEV---ERAALEQANRRL 376
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
678-1045 |
2.66e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 58.81 E-value: 2.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 678 ELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEdrekGALIEELLQAKQDLQDLLIAKEEQEDLLRKRE 757
Cdd:COG3096 279 ERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARE----SDLEQDYQAASDHLNLVQTALRQQEKIERYQE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 758 rELTALKGALkEEVSSHDQEMDKLKEQYDAELQALRESVEEA-------TKNVEVLASRSNTSEQDQAGTEMRVKLLQEE 830
Cdd:COG3096 355 -DLEELTERL-EEQEEVVEEAAEQLAEAEARLEAAEEEVDSLksqladyQQALDVQQTRAIQYQQAVQALEKARALCGLP 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 831 NEKLQGRSEELERRVAQLQRQIEDLKGDE-------------AKAKETLKKYEGEIRQlEEALVHARKEEKEAVSARRAL 897
Cdd:COG3096 433 DLTPENAEDYLAAFRAKEQQATEEVLELEqklsvadaarrqfEKAYELVCKIAGEVER-SQAWQTARELLRRYRSQQALA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 898 ENE--LEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRtstlELQNQL 975
Cdd:COG3096 512 QRLqqLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRS----ELRQQL 587
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462546316 976 DEYKEKNR---------RELAEMQRQLKEKTLEAEKSrltAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDL 1045
Cdd:COG3096 588 EQLRARIKelaarapawLAAQDALERLREQSGEALAD---SQEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
606-1001 |
2.79e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.44 E-value: 2.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 606 TSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEE 685
Cdd:TIGR00618 527 TRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEA 606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 686 lfqVKMEREQHQTEIRDLQDQLSEMHdeldsakrsedrekgaLIEELLQAKQDLQDLLIAKE-EQEDLLRKRERELTALK 764
Cdd:TIGR00618 607 ---EDMLACEQHALLRKLQPEQDLQD----------------VRLHLQQCSQELALKLTALHaLQLTLTQERVREHALSI 667
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 765 GALKEEvsshdqemdkLKEQYDAELQALRESVEEATKNVEVLASRSNtseqdqagtemrvkLLQEENEKLQGRSEELERR 844
Cdd:TIGR00618 668 RVLPKE----------LLASRQLALQKMQSEKEQLTYWKEMLAQCQT--------------LLRELETHIEEYDREFNEI 723
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 845 VAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSqttQEQKQLSEKLKE 924
Cdd:TIGR00618 724 ENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQ---FFNRLREEDTHL 800
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462546316 925 ESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAE 1001
Cdd:TIGR00618 801 LKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
768-1255 |
3.30e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.44 E-value: 3.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 768 KEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSeELERRVAQ 847
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQL-KKQQLLKQ 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 848 LQRQIEDLKGDEA------------------------------KAKETLKKYEGEIRQLEEALVHARKEEKEAVS--ARR 895
Cdd:TIGR00618 265 LRARIEELRAQEAvleetqerinrarkaaplaahikavtqieqQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSieEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 896 ALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRL---KNEMENERWHLGKTIEKLQKEMADI-VEASRTSTLEL 971
Cdd:TIGR00618 345 RLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLqqqKTTLTQKLQSLCKELDILQREQATIdTRTSAFRDLQG 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 972 QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAM-KMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDL----- 1045
Cdd:TIGR00618 425 QLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLqESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELqeepc 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1046 -----EYELEAKSHLKDD---RSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLEC 1117
Cdd:TIGR00618 505 plcgsCIHPNPARQDIDNpgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1118 DKISLERQNKDLKSRI---IHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRaNLQLSNRRLERKVKELVMQVDDEH 1194
Cdd:TIGR00618 585 DIPNLQNITVRLQDLTeklSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQ-ELALKLTALHALQLTLTQERVREH 663
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 1195 LSLTDQKDQLSLrlkamkrqvEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKK 1255
Cdd:TIGR00618 664 ALSIRVLPKELL---------ASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
614-898 |
3.61e-08 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 56.46 E-value: 3.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMER 693
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 694 EQHQTEIRDLQDQLSE---MHDELDSAKRSEDREKGALieELLQAKQDLQDLLIAKEEQedlLRKRERELTALKGALKEE 770
Cdd:COG1340 81 DELNEKLNELREELDElrkELAELNKAGGSIDKLRKEI--ERLEWRQQTEVLSPEEEKE---LVEKIKELEKELEKAKKA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 771 VSSHDQEMDKLkeqydAELQALRESVEEATKNVEVLAsrsntSEQDQAGTEMrVKLLQEEnEKLQGRSEELERRVAQLQR 850
Cdd:COG1340 156 LEKNEKLKELR-----AELKELRKEAEEIHKKIKELA-----EEAQELHEEM-IELYKEA-DELRKEADELHKEIVEAQE 223
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2462546316 851 QIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALE 898
Cdd:COG1340 224 KADELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEELEEKAEE 271
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
604-888 |
3.79e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 3.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 604 NSTSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNiKEERERMRANLEELRSQHNEKVEENS----TLQQRLEESEGEL 679
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKL-KELAEQLKELEEKLKKYNLEELEKKAeeyeKLKEKLIKLKGEI 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 680 R---KNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKR 756
Cdd:PRK03918 542 KslkKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKEL 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 757 ERELTALKGALKEevsshdqemdklkeqydaeLQALRESVEEATKNVEvlasrsntseqdqagtEMRVKLLQEENEKLQG 836
Cdd:PRK03918 622 KKLEEELDKAFEE-------------------LAETEKRLEELRKELE----------------ELEKKYSEEEYEELRE 666
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2462546316 837 RSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEK 888
Cdd:PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
606-865 |
4.25e-08 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 57.21 E-value: 4.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 606 TSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEE 685
Cdd:pfam07888 114 SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKE 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 686 LFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEdrekgALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKG 765
Cdd:pfam07888 194 FQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKE-----AENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRD 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 -------------------------ALKEEVSSHDQE---------MDKLK-EQYDAELQALRESVEEATKNVEVL---- 806
Cdd:pfam07888 269 rtqaelhqarlqaaqltlqladaslALREGRARWAQEretlqqsaeADKDRiEKLSAELQRLEERLQEERMEREKLevel 348
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462546316 807 -----ASRSNTSEQDQAGTEMR--VKLLQEENEKLQGRSEELERRVAQLQRQIE---DLKGDEAKAKET 865
Cdd:pfam07888 349 grekdCNRVQLSESRRELQELKasLRVAQKEKEQLQAEKQELLEYIRQLEQRLEtvaDAKWSEAALTST 417
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
599-923 |
4.38e-08 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 57.73 E-value: 4.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 599 NNQACNSTSEVKDLLEQKSKLTIEVAELQRQLqlevkNQQNIKEerermRANLEELRSQHNEKveenstLQQRLEESege 678
Cdd:pfam05667 195 TAQPSSRASVVPSLLERNAAELAAAQEWEEEW-----NSQGLAS-----RLTPEEYRKRKRTK------LLKRIAEQ--- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 679 lrknLEELFQVKMEREQHQTEIR-DLQDQLSEMHDeldSAKRSEDREKGALI--EELLQAKQDLQ----DLLIAKEEQED 751
Cdd:pfam05667 256 ----LRSAALAGTEATSGASRSAqDLAELLSSFSG---SSTTDTGLTKGSRFthTEKLQFTNEAPaatsSPPTKVETEEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 752 LLRKRERELTALKG---ALKEEVSSHDQEMDKLK---EQYDAELQALRESVEEATKNVEVlasrsntseqdqagTEMRVK 825
Cdd:pfam05667 329 LQQQREEELEELQEqleDLESSIQELEKEIKKLEssiKQVEEELEELKEQNEELEKQYKV--------------KKKTLD 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 826 LLQ--EEN-EKLQGRSEELERRVAQLQRQIEdlkgdeaKAKETLKKyegEIRQLEEALVHARKEEKEAVSARRALENELE 902
Cdd:pfam05667 395 LLPdaEENiAKLQALVDASAQRLVELAGQWE-------KHRVPLIE---EYRALKEAKSNKEDESQRKLEEIKELREKIK 464
|
330 340
....*....|....*....|.
gi 2462546316 903 AAQGNLSQTTQEQKQLSEKLK 923
Cdd:pfam05667 465 EVAEEAKQKEELYKQLVAEYE 485
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
758-1250 |
4.47e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 57.93 E-value: 4.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 758 RELTALKGALKEEVSSHDQEMDKLKEQYD---AELQALRESVEEATKnVEVLASRSNTSEQdqagTEMRVKLLQEENEKL 834
Cdd:pfam12128 196 RDVKSMIVAILEDDGVVPPKSRLNRQQVEhwiRDIQAIAGIMKIRPE-FTKLQQEFNTLES----AELRLSHLHFGYKSD 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 835 QGRSEELERRVAQLQRQIED-LKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENE-LEAAQGNLSQTT 912
Cdd:pfam12128 271 ETLIASRQEERQETSAELNQlLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLP 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 913 QEQKQLSEKLKE---------ESEQKEQLRRLKNEMENERwhlgkTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNR 983
Cdd:pfam12128 351 SWQSELENLEERlkaltgkhqDVTAKYNRRRSKIKEQNNR-----DIAGIKDKLAKIREARDRQLAVAEDDLQALESELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 984 RELAEMQRQLKEKTLEAeKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTK-RQLLEQTLK---DLEYELEAKSHLKDDR 1059
Cdd:pfam12128 426 EQLEAGKLEFNEEEYRL-KSRLGELKLRLNQATATPELLLQLENFDERIERaREEQEAANAeveRLQSELRQARKRRDQA 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1060 SRLVKQMEDKVSQLEMELEEE---------------RNNSDLLSERISR--SREQMeqVRNELLQERAARQdlECDKISL 1122
Cdd:pfam12128 505 SEALRQASRRLEERQSALDELelqlfpqagtllhflRKEAPDWEQSIGKviSPELL--HRTDLDPEVWDGS--VGGELNL 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1123 ERQNKDLKsRIIHleGSYRSSKEglvvQMEARIAELEDRLESEeRDRAnlqlsnRRLERKVKELVMQVDDEHLS------ 1196
Cdd:pfam12128 581 YGVKLDLK-RIDV--PEWAASEE----ELRERLDKAEEALQSA-REKQ------AAAEEQLVQANGELEKASREetfart 646
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 1197 -----------LTDQKDQLSLRL-KAMKRQVEEAEEEIDRLESSKKKLQRELEeqmDMNEHLQGQL 1250
Cdd:pfam12128 647 alknarldlrrLFDEKQSEKDKKnKALAERKDSANERLNSLEAQLKQLDKKHQ---AWLEEQKEQK 709
|
|
| COG4192 |
COG4192 |
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ... |
612-876 |
5.20e-08 |
|
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];
Pssm-ID: 443346 [Multi-domain] Cd Length: 640 Bit Score: 57.39 E-value: 5.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 612 LLEQKSKLTIEVAELQRQLQ--LEVKNQQNIKEERERMRANLEELRsQHNEKVEENSTLQQRLEESEGELRKNLEELFQV 689
Cdd:COG4192 53 KLQASLKLEENSNELVAALPefAAATNTTERSQLRNQLNTQLADIE-ELLAELEQLTQDAGDLRAAVADLRNLLQQLDSL 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 690 KMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRkRERELTALKGALKE 769
Cdd:COG4192 132 LTQRIALRRRLQELLEQINWLHQDFNSELTPLLQEASWQQTRLLDSVETTESLRNLQNELQLLLR-LLAIENQIVSLLRE 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 770 -EVSSHDQEMDKLKEQYDaelqalrESVEEATKNVEVLASRSNTSEQDQAGTEMRV---------KLLQEE---NEKLQG 836
Cdd:COG4192 211 vAAARDQADVDNLFDRLQ-------YLKDELDRNLQALKNYPSTITLRQLIDELLAigsgegglpSLRRDElaaQATLEA 283
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2462546316 837 RSEELERRVAQLQRQIEDLKGdeaKAKETLKKYEGEIRQL 876
Cdd:COG4192 284 LAEENNSILEQLRTQISGLVG---NSREQLVALNQETAQL 320
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
719-943 |
5.50e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 57.33 E-value: 5.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 719 RSEDREKGALI-EELLQAKQDLQdlliaKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDaeLQALRESVE 797
Cdd:COG3206 143 TSPDPELAAAVaNALAEAYLEQN-----LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNG--LVDLSEEAK 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 798 EATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELER--RVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQ 875
Cdd:COG3206 216 LLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPNHPDVIA 295
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462546316 876 LEEALVHARKE-EKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENER 943
Cdd:COG3206 296 LRAQIAALRAQlQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVAR 364
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
575-808 |
5.55e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 5.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 575 KRKVNLVFEKIQTLKSR---AAGSAQGNNQACNSTSEVKDLLEQKSKLT---IEVAELQRQLQlevknqqNIKEERERMR 648
Cdd:COG4913 609 RAKLAALEAELAELEEElaeAEERLEALEAELDALQERREALQRLAEYSwdeIDVASAEREIA-------ELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 649 ANLEELRsqhnekveensTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGAL 728
Cdd:COG4913 682 ASSDDLA-----------ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 729 IEELLQAkqdlqdlLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLAS 808
Cdd:COG4913 751 LEERFAA-------ALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDR 823
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
839-926 |
6.51e-08 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 57.40 E-value: 6.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 839 EELERRVAQLQRQIEDLKGDEAKA-KETLKKYEGEIRQLEEALVHAR---KEEKEAVSARRALENELEAAQGNLSQTTQE 914
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEAsFERLAELRDELAELEEELEALKarwEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90
....*....|..
gi 2462546316 915 QKQLSEKLKEES 926
Cdd:COG0542 494 LAELEEELAELA 505
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
551-1134 |
8.06e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 57.37 E-value: 8.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 551 NEETAKQILYNYLKEGSTDNDDATKrKVNLVFEKIQTLKSRAAGSAQG----NNQACNSTSEVKDLLEQKSKLTIEVAEL 626
Cdd:TIGR01612 1087 NEIKEKLKHYNFDDFGKEENIKYAD-EINKIKDDIKNLDQKIDHHIKAleeiKKKSENYIDEIKAQINDLEDVADKAISN 1165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 627 QRQLQLEvKNQQNIKEERERMRANLEELRSQHNE--KVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTE----- 699
Cdd:TIGR01612 1166 DDPEEIE-KKIENIVTKIDKKKNIYDEIKKLLNEiaEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEhmika 1244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 700 ----IRDLqDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEevsSHD 775
Cdd:TIGR01612 1245 meayIEDL-DEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEE---SDI 1320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 776 QEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMR--VKLLQEENEKLQGRSEELERRVAQLQRQIe 853
Cdd:TIGR01612 1321 NDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNKIKKIIDEVKeyTKEIEENNKNIKDELDKSEKLIKKIKDDI- 1399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 854 DLKGDEAKAKETL--KKYEGEIRQLEEALVHARKEE----------KEAVSARRALENELEAAQGNLSQTTQEQKQ---- 917
Cdd:TIGR01612 1400 NLEECKSKIESTLddKDIDECIKKIKELKNHILSEEsnidtyfknaDENNENVLLLFKNIEMADNKSQHILKIKKDnatn 1479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 918 -LSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEA-SRTSTLELQNQLDEYKEKNRRELAEMQRQLKE 995
Cdd:TIGR01612 1480 dHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELlNKYSALAIKNKFAKTKKDSEIIIKEIKDAHKK 1559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 996 KTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTkrqlLEQTLKDLEYELEAKSHLKDDRSRLVKQ---MEDKVSQ 1072
Cdd:TIGR01612 1560 FILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAID----IQLSLENFENKFLKISDIKKKINDCLKEtesIEKKISS 1635
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462546316 1073 L-----EMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRII 1134
Cdd:TIGR01612 1636 FsidsqDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGII 1702
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
607-1262 |
8.46e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 56.89 E-value: 8.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQLeVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELrknleel 686
Cdd:PRK04863 314 RELAELNEAESDLEQDYQAASDHLNL-VQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARA------- 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 687 fqvkmerEQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGAlIEELLQAKQ--DLQDLLIAK-EEQEDLLRKRERELTAL 763
Cdd:PRK04863 386 -------EAAEEEVDELKSQLADYQQALDVQQTRAIQYQQA-VQALERAKQlcGLPDLTADNaEDWLEEFQAKEQEATEE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 764 KGALKEEVSSHDQemdkLKEQYDAELQALRESVEEATKNVevlASRSNTSEQDQAGTEmrvKLLQEENEKLQGRSEELER 843
Cdd:PRK04863 458 LLSLEQKLSVAQA----AHSQFEQAYQLVRKIAGEVSRSE---AWDVARELLRRLREQ---RHLAEQLQQLRMRLSELEQ 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 844 RVAQ---LQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHArKEEKEAVSARRaleneleaaqgnlSQTTQEQKQLSE 920
Cdd:PRK04863 528 RLRQqqrAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESL-SESVSEARERR-------------MALRQQLEQLQA 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 921 KLkEESEQKEQlrrlknemeneRWH-LGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE--KNRRELAEMQRQLKEKT 997
Cdd:PRK04863 594 RI-QRLAARAP-----------AWLaAQDALARLREQSGEEFEDSQDVTEYMQQLLEREREltVERDELAARKQALDEEI 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 998 LE------AEKSRLTAMKMQDEMRLMEE-----ELRD--YQRA-----------QDEALTKRQL--LEQTLKDLeYELEA 1051
Cdd:PRK04863 662 ERlsqpggSEDPRLNALAERFGGVLLSEiyddvSLEDapYFSAlygparhaivvPDLSDAAEQLagLEDCPEDL-YLIEG 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1052 KSHLKDDRSRLVKQMEDKVSQlemeleeERNNSDLlseRISR----------SREQ-MEQVRNE--LLQERAARQDLECD 1118
Cdd:PRK04863 741 DPDSFDDSVFSVEELEKAVVV-------KIADRQW---RYSRfpevplfgraAREKrIEQLRAEreELAERYATLSFDVQ 810
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1119 KisLERQNKDLKSRI-IHLEGSYRSSKEGLVVQMEARIAELE---DRLESEERD-RANLQLSNRRLE--RKVKELVMQVD 1191
Cdd:PRK04863 811 K--LQRLHQAFSRFIgSHLAVAFEADPEAELRQLNRRRVELEralADHESQEQQqRSQLEQAKEGLSalNRLLPRLNLLA 888
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1192 DEHLSltdqkdqlslrlkamkRQVEEAEEEIDRLESSKKKLQR------ELEEQMDM-------NEHLQGQLNSMKKDLS 1258
Cdd:PRK04863 889 DETLA----------------DRVEEIREQLDEAEEAKRFVQQhgnalaQLEPIVSVlqsdpeqFEQLKQDYQQAQQTQR 952
|
....
gi 2462546316 1259 RLKK 1262
Cdd:PRK04863 953 DAKQ 956
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
865-1263 |
8.73e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 56.67 E-value: 8.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 865 TLKKYE-----GEIRQLEEALVHARKEEKEAVSARRALENELeaaQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEM 939
Cdd:pfam17380 229 TLAPYEkmerrKESFNLAEDVTTMTPEYTVRYNGQTMTENEF---LNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEK 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 940 EnerwHLGKTIEKLQKemadIVEASRTSTLELQNQLDEYKEKNRRELaEMQRQLKEKTLEAEKSRLTAMKmQDEMRLMEE 1019
Cdd:pfam17380 306 E----EKAREVERRRK----LEEAEKARQAEMDRQAAIYAEQERMAM-ERERELERIRQEERKRELERIR-QEEIAMEIS 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1020 ELRDYQRAQDEALTKRQLLEQtlkdleyELEAKSHLK---DDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERiSRSRE 1096
Cdd:pfam17380 376 RMRELERLQMERQQKNERVRQ-------ELEAARKVKileEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEE-ERARE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1097 qMEQVRNEllqeraarqdlecdkiSLERQNKDLKSRiihlegsyrsskeglvvQMEARIAELEDRLESEERDRANLQLSN 1176
Cdd:pfam17380 448 -MERVRLE----------------EQERQQQVERLR-----------------QQEEERKRKKLELEKEKRDRKRAEEQR 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1177 RRLERKvkelvmQVDDEHLSLTDQKDQLSLRLKAMK-RQVEEAEEEIDRLESSKKKLQRELEEQmdmnEHLQGQLNSMKK 1255
Cdd:pfam17380 494 RKILEK------ELEERKQAMIEEERKRKLLEKEMEeRQKAIYEEERRREAEEERRKQQEMEER----RRIQEQMRKATE 563
|
....*...
gi 2462546316 1256 DLSRLKKL 1263
Cdd:pfam17380 564 ERSRLEAM 571
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
824-1238 |
1.06e-07 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 56.24 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 824 VKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGeirqleealvharKEEKEAVSARRALenelea 903
Cdd:pfam05622 2 LSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLES-------------GDDSGTPGGKKYL------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 904 aqgnlsqttQEQKQLsEKLKEESEQKEQLR---RLKNE-MENERWHLGKTIEKLQ---------KEMADIVEASRTSTLE 970
Cdd:pfam05622 63 ---------LLQKQL-EQLQEENFRLETARddyRIKCEeLEKEVLELQHRNEELTslaeeaqalKDEMDILRESSDKVKK 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 971 LQNQLDEYKEKnRRELAEMQRQLkeKTLEaEKSrltAMKMQDEMRLmEEELRDYQ--RAQDEALtKRQlleqtLKDLEYE 1048
Cdd:pfam05622 133 LEATVETYKKK-LEDLGDLRRQV--KLLE-ERN---AEYMQRTLQL-EEELKKANalRGQLETY-KRQ-----VQELHGK 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1049 LEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSR-EQMEQVRNELLQERAARQDLECDKISLERQNK 1127
Cdd:pfam05622 199 LSEESKKADKLEFEYKKLEEKLEALQKEKERLIIERDTLRETNEELRcAQLQQAELSQADALLSPSSDPGDNLAAEIMPA 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1128 DLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQlSLR 1207
Cdd:pfam05622 279 EIREKLIRLQHENKMLRLGQEGSYRERLTELQQLLEDANRRKNELETQNRLANQRILELQQQVEELQKALQEQGSK-AED 357
|
410 420 430
....*....|....*....|....*....|.
gi 2462546316 1208 LKAMKRQVEEAEEEIDRLESSKKKLQRELEE 1238
Cdd:pfam05622 358 SSLLKQKLEEHLEKLHEAQSELQKKKEQIEE 388
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
609-943 |
1.28e-07 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 55.46 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 609 VKDLLEQKSKLTIEVAELQRQLQLEVKNQQnikeereRMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQ 688
Cdd:pfam19220 36 IEAILRELPQAKSRLLELEALLAQERAAYG-------KLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 689 VKMEREQHQTEIRDLQDQLSEMHDELdsakRSEDREKGALIEELLQAKQDLQDL---LIAKEEQEDLLRKRERELTALKG 765
Cdd:pfam19220 109 LRIELRDKTAQAEALERQLAAETEQN----RALEEENKALREEAQAAEKALQRAegeLATARERLALLEQENRRLQALSE 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 ALKEEVSSHDQEMDKLKEQYDAELQALRESveEATKNVEVLASRSNTSEQDQAGTEMRVKL--LQEENEKLQGRSEELER 843
Cdd:pfam19220 185 EQAAELAELTRRLAELETQLDATRARLRAL--EGQLAAEQAERERAEAQLEEAVEAHRAERasLRMKLEALTARAAATEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 844 RVAQ----LQRQIEDLKGDEAKAKET---LKKYEGEIRQLEEALVHARKEEKEAVSARRALENE-------LEAAQGNLS 909
Cdd:pfam19220 263 LLAEarnqLRDRDEAIRAAERRLKEAsieRDTLERRLAGLEADLERRTQQFQEMQRARAELEERaemltkaLAAKDAALE 342
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2462546316 910 QTTQEQKQLSEKL--------KEESEQKEQLRRLKNEMENER 943
Cdd:pfam19220 343 RAEERIASLSDRIaeltkrfeVERAALEQANRRLKEELQRER 384
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
874-1244 |
1.46e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.34 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 874 RQLEEalVHARKEEKEAVSARRA-LENELEAAQGNLSQTTQEQKQLSEKLKEESEqkeqlrrLKNEMENERWHLgktiEK 952
Cdd:pfam01576 2 RQEEE--MQAKEEELQKVKERQQkAESELKELEKKHQQLCEEKNALQEQLQAETE-------LCAEAEEMRARL----AA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 953 LQKEMADIVEasrtstlELQNQLDEYKEKNRRelaemqrqlkektLEAEKSrltamKMQDEMRLMEEELRDYQRAQDEAL 1032
Cdd:pfam01576 69 RKQELEEILH-------ELESRLEEEEERSQQ-------------LQNEKK-----KMQQHIQDLEEQLDEEEAARQKLQ 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1033 TKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAAR 1112
Cdd:pfam01576 124 LEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGR 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1113 QDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLvVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDD 1192
Cdd:pfam01576 204 QELEKAKRKLEGESTDLQEQIAELQAQIAELRAQL-AKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLES 282
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462546316 1193 EHLS---LTDQKDQLSLRLKAMKRQVEE------AEEEI-DRLESSKKKLQRELEEQMDMNE 1244
Cdd:pfam01576 283 ERAArnkAEKQRRDLGEELEALKTELEDtldttaAQQELrSKREQEVTELKKALEEETRSHE 344
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
738-1240 |
2.11e-07 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 55.08 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 738 DLQDLLIAKEEqedlLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDaELQALRESVEEATKNVEVLASRsntseqdq 817
Cdd:pfam05622 1 DLSEAQEEKDE----LAQRCHELDQQVSLLQEEKNSLQQENKKLQERLD-QLESGDDSGTPGGKKYLLLQKQ-------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 818 agtemrVKLLQEENEKLQG-------RSEELERRVAQLQRQIEDLKGDEAKAKeTLKKyegEIRQLEEALVHARKEEKEA 890
Cdd:pfam05622 68 ------LEQLQEENFRLETarddyriKCEELEKEVLELQHRNEELTSLAEEAQ-ALKD---EMDILRESSDKVKKLEATV 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 891 VSARRALENeleaaqgnLSQTTQEQKQLSEKLKEESEQKEQLRrlknemenerwhlgktiEKLQKEMA--DIVEASRTST 968
Cdd:pfam05622 138 ETYKKKLED--------LGDLRRQVKLLEERNAEYMQRTLQLE-----------------EELKKANAlrGQLETYKRQV 192
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 969 LELQNQLDEYKEKNRRELAEMQRqLKEK--TLEAEKSRLtaMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLE 1046
Cdd:pfam05622 193 QELHGKLSEESKKADKLEFEYKK-LEEKleALQKEKERL--IIERDTLRETNEELRCAQLQQAELSQADALLSPSSDPGD 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1047 yELEAKSHLKDDRSRLVK-QMEDKVSQLEMELEEERNNSDLLS------ERISRSREQMEQVRNELLQERAARQDLECDK 1119
Cdd:pfam05622 270 -NLAAEIMPAEIREKLIRlQHENKMLRLGQEGSYRERLTELQQlledanRRKNELETQNRLANQRILELQQQVEELQKAL 348
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1120 ISLERQNKD---LKSRI-IHLE-----GSYRSSKEGLV--------VQMEARIAELEDRLESEERDRANLQLSNRRLERK 1182
Cdd:pfam05622 349 QEQGSKAEDsslLKQKLeEHLEklheaQSELQKKKEQIeelepkqdSNLAQKIDELQEALRKKDEDMKAMEERYKKYVEK 428
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1183 VKELVMQVDDEhlsltdQKDQLSLRLKAMKRQVEEAEEEIDRLESSKK--KLQRELEEQM 1240
Cdd:pfam05622 429 AKSVIKTLDPK------QNPASPPEIQALKNQLLEKDKKIEHLERDFEksKLQREQEEKL 482
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
689-845 |
3.00e-07 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 55.09 E-value: 3.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 689 VKMEREQHQTEIRDLQDQLSEMHDELDSAKRSED---REKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKG 765
Cdd:COG0542 402 VRMEIDSKPEELDELERRLEQLEIEKEALKKEQDeasFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELE 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 ALKEEVSSHDQEMDKLKEQYDAELQALRESVEEAtkNV-EVLASRsntseqdqagTEMRV-KLLQEENEKLQGRSEELER 843
Cdd:COG0542 482 QRYGKIPELEKELAELEEELAELAPLLREEVTEE--DIaEVVSRW----------TGIPVgKLLEGEREKLLNLEEELHE 549
|
..
gi 2462546316 844 RV 845
Cdd:COG0542 550 RV 551
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
812-1007 |
5.10e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 53.68 E-value: 5.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 812 TSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAV 891
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 892 SA--------------------------RRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWH 945
Cdd:COG3883 93 RAlyrsggsvsyldvllgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462546316 946 LGKTIEKLQKEMADIVEASRtstlELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTA 1007
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEA----AAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
638-997 |
6.53e-07 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 53.69 E-value: 6.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 638 QNIKEERERMRANLEELRSQHnekvEENSTLQQRLEESEGELRKNLEElfqvkmEREQHQTEIRDLQDQLSEMHDELDSA 717
Cdd:PRK04778 115 DLIEEDIEQILEELQELLESE----EKNREEVEQLKDLYRELRKSLLA------NRFSFGPALDELEKQLENLEEEFSQF 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 718 KR---SEDREKGAliEELLQAKQDLQDLLIAKEEQEDLLRKRERELTA----LKGALKEEVSSH--------DQEMDKLK 782
Cdd:PRK04778 185 VElteSGDYVEAR--EILDQLEEELAALEQIMEEIPELLKELQTELPDqlqeLKAGYRELVEEGyhldhldiEKEIQDLK 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 783 EQYDAELQALRE-SVEEATKNVEVLASRSNTSeQDQAGTEMRVK-LLQEENEKLQGRSEELERRVAQLQRQIEDLKGD-- 858
Cdd:PRK04778 263 EQIDENLALLEElDLDEAEEKNEEIQERIDQL-YDILEREVKARkYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSyt 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 859 -EAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKL----KEESEQKEQLR 933
Cdd:PRK04778 342 lNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLqglrKDELEAREKLE 421
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 934 RLKNEMENERWHLGKT-IEKLQKEMADIVEASRTSTLELQNQLDEYK---EKNRRELAEMQ---RQLKEKT 997
Cdd:PRK04778 422 RYRNKLHEIKRYLEKSnLPGLPEDYLEMFFEVSDEIEALAEELEEKPinmEAVNRLLEEATedvETLEEET 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
894-1259 |
7.14e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 7.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 894 RRALENELEAAQGNLSQ----TTQEQKQLsEKLKEESEQKEQLRRLKNEMEN-ERWHLGKTIEKLQKEMAdiveasrtst 968
Cdd:TIGR02168 174 RKETERKLERTRENLDRlediLNELERQL-KSLERQAEKAERYKELKAELRElELALLVLRLEELREELE---------- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 969 lelqnQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLtamkmqdEMRLMEEELRDYQRAQDEALTKRQLLEQTLKdleye 1048
Cdd:TIGR02168 243 -----ELQEELKEAEEELEELTAELQELEEKLEELRL-------EVSELEEEIEELQKELYALANEISRLEQQKQ----- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1049 leaksHLKDDRSRLVKQMEdkvsQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAArqdlecdkisLERQNKD 1128
Cdd:TIGR02168 306 -----ILRERLANLERQLE----ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE----------LEELEAE 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1129 LKsriihlegsyrsskeglvvQMEARIAELEDRLESEERDRAnlqlsnrrlerkvkelvmqvddehlsltdqkdqlslrl 1208
Cdd:TIGR02168 367 LE-------------------ELESRLEELEEQLETLRSKVA-------------------------------------- 389
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 1209 kAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSR 1259
Cdd:TIGR02168 390 -QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
692-921 |
7.42e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.91 E-value: 7.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 692 EREQHQTEIRDLQDQLSEMHDELDSAkrseDREKGALIEELLQAKQDLQDLliaKEEQEDLlrkrERELTALKgalkeev 771
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDAL----QAELEELNEEYNELQAELEAL---QAEIDKL----QAEIAEAE------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 772 sshdQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRV-KLLQEENEKLQGRSEELERRVAQLQR 850
Cdd:COG3883 79 ----AEIEERREELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIaDADADLLEELKADKAELEAKKAELEA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 851 QIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEK 921
Cdd:COG3883 155 KLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
816-956 |
7.51e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 53.71 E-value: 7.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 816 DQAGTEMRVKLLQEENEKL-------QGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEK 888
Cdd:COG2433 379 EEALEELIEKELPEEEPEAerekeheERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEER 458
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462546316 889 EAVSARR---ALENELEaaqgNLsqttqeQKQLSEKLKEESEQKEQLRRLKN--EMENERWHLG-KTIEKLQKE 956
Cdd:COG2433 459 REIRKDReisRLDREIE----RL------ERELEEERERIEELKRKLERLKElwKLEHSGELVPvKVVEKFTKE 522
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
566-784 |
9.24e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 9.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 566 GSTDNDDATKRKVNLVFEKIQTLKSRAAgsaQGNNQACNSTSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERE 645
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELA---ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 646 RMRANLEELRSQHNE------KVEENSTLQQRLE-ESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAK 718
Cdd:COG4942 94 ELRAELEAQKEELAEllralyRLGRQPPLALLLSpEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 719 rsedREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQ 784
Cdd:COG4942 174 ----AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
667-905 |
1.08e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 53.01 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 667 TLQQRLEESEGELRKnlEELFQVKMEREQHQTE-IRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIA 745
Cdd:PRK05771 13 TLKSYKDEVLEALHE--LGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 746 KEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLK--EQYDAELQALRESveeatKNVEVLA---SRSNTSEQDQAGT 820
Cdd:PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERLEpwGNFDLDLSLLLGF-----KYVSVFVgtvPEDKLEELKLESD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 821 EMRVKLLQEENEK-------LQGRSEELERRVAQLQRQIEDLKgDEAKAKETLKKYEGEIRQLEEALVHARKE------- 886
Cdd:PRK05771 166 VENVEYISTDKGYvyvvvvvLKELSDEVEEELKKLGFERLELE-EEGTPSELIREIKEELEEIEKERESLLEElkelakk 244
|
250 260
....*....|....*....|
gi 2462546316 887 -EKEAVSARRALENELEAAQ 905
Cdd:PRK05771 245 yLEELLALYEYLEIELERAE 264
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1011-1239 |
1.12e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1011 QDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAkshlkddRSRLVKQMEDKVSQLEMELEEERNNSDLLSER 1090
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA-------LARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1091 ISRSREQMEQVRNELlqERAARQDLEcdKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRA 1170
Cdd:COG4942 99 LEAQKEELAELLRAL--YRLGRQPPL--ALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462546316 1171 NLQLSNRRLERKVKELVMQVDDEhlslTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQ 1239
Cdd:COG4942 175 ELEALLAELEEERAALEALKAER----QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
607-939 |
1.46e-06 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 52.53 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQLEVKNQqnikeerermranLEELRSQHNEKVEEN-----STLQQRLEESEGELRK 681
Cdd:PRK04778 201 DQLEEELAALEQIMEEIPELLKELQTELPDQ-------------LQELKAGYRELVEEGyhldhLDIEKEIQDLKEQIDE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 682 NLEELFQVKMEREQhqTEIRDLQDQLSEMHDELD---SAKRSEDREKGALIEELLQAKQDLQDLliakeeQEDLLRKRER 758
Cdd:PRK04778 268 NLALLEELDLDEAE--EKNEEIQERIDQLYDILErevKARKYVEKNSDTLPDFLEHAKEQNKEL------KEEIDRVKQS 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 759 -ELTalkgalkeevsshDQEMDKLKeQYDAELQALRESVEEATKNVEvlasrsntsEQDQAGTEmrvklLQEENEKLQGR 837
Cdd:PRK04778 340 yTLN-------------ESELESVR-QLEKQLESLEKQYDEITERIA---------EQEIAYSE-----LQEELEEILKQ 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 838 SEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRqleealVHARKEEK--------EAVSARRALENELEAAQGNLS 909
Cdd:PRK04778 392 LEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH------EIKRYLEKsnlpglpeDYLEMFFEVSDEIEALAEELE 465
|
330 340 350
....*....|....*....|....*....|
gi 2462546316 910 QTTQEQKQLSEKLKEESEQKEQLRRLKNEM 939
Cdd:PRK04778 466 EKPINMEAVNRLLEEATEDVETLEEETEEL 495
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
600-939 |
1.61e-06 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 52.55 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 600 NQACNSTSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQqnikeerermranLEELRSQHNEKVEENSTL-----QQRLEE 674
Cdd:pfam06160 175 LEAREVLEKLEEETDALEELMEDIPPLYEELKTELPDQ-------------LEELKEGYREMEEEGYALehlnvDKEIQQ 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 675 SEGELRKNLEELFQVKMEREQhqTEIRDLQDQLSEMHDeldsakrsedrekgaLIEELLQAKQDLQDLLIAKEEQEDLLR 754
Cdd:pfam06160 242 LEEQLEENLALLENLELDEAE--EALEEIEERIDQLYD---------------LLEKEVDAKKYVEKNLPEIEDYLEHAE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 755 KRERELTALKGALKEEVSSHDQEMDKLKeQYDAELQALRESVEEATKNVEvlasrsntsEQDQAGTEmrvklLQEENEKL 834
Cdd:pfam06160 305 EQNKELKEELERVQQSYTLNENELERVR-GLEKQLEELEKRYDEIVERLE---------EKEVAYSE-----LQEELEEI 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 835 QGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEealvhaRKEEK--------EAVSARRALENELEAAQG 906
Cdd:pfam06160 370 LEQLEEIEEEQEEFKESLQSLRKDELEAREKLDEFKLELREIK------RLVEKsnlpglpeSYLDYFFDVSDEIEDLAD 443
|
330 340 350
....*....|....*....|....*....|...
gi 2462546316 907 NLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEM 939
Cdd:pfam06160 444 ELNEVPLNMDEVNRLLDEAQDDVDTLYEKTEEL 476
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
747-903 |
2.28e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 50.31 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 747 EEQEDLLR-----KRERELTALKGALKEEVSSHDQEMDKLKEQYDA---ELQALRESVEEATKNVEVLASR--SNTSEQD 816
Cdd:COG1579 4 EDLRALLDlqeldSELDRLEHRLKELPAELAELEDELAALEARLEAaktELEDLEKEIKRLELEIEEVEARikKYEEQLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 817 QAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEI----RQLEEALVHARKEEKEAVS 892
Cdd:COG1579 84 NVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELeekkAELDEELAELEAELEELEA 163
|
170
....*....|.
gi 2462546316 893 ARRALENELEA 903
Cdd:COG1579 164 EREELAAKIPP 174
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
647-1258 |
2.72e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 51.75 E-value: 2.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 647 MRANLEELRSQH--NEKVEENSTLQQRL-EESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAK----- 718
Cdd:pfam10174 76 IQALQDELRAQRdlNQLLQQDFTTSPVDgEDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKqtlga 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 719 RSEDREKgalIEELLQAKQdlqdlLIAKEEQEDLLRKREreltalkgalKEEVSSHDQEMDKLKEQYDAELQALRESVEe 798
Cdd:pfam10174 156 RDESIKK---LLEMLQSKG-----LPKKSGEEDWERTRR----------IAEAEMQLGHLEVLLDQKEKENIHLREELH- 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 799 atknvevlasRSNTSEQDQAGTEMRVKLLQEENEKLQgrseELERRVAQLQRQIEDLKGDEAKAKEtlkKYEGEIRQLEE 878
Cdd:pfam10174 217 ----------RRNQLQPDPAKTKALQTVIEMKDTKIS----SLERNIRDLEDEVQMLKTNGLLHTE---DREEEIKQMEV 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 879 ALVHARKEEKEAVSARRAL---ENELEAAQGNLSQTTQEQ---KQLSEKLKEESEQKEQLRR-LKNEMENERWHLGK--- 948
Cdd:pfam10174 280 YKSHSKFMKNKIDQLKQELskkESELLALQTKLETLTNQNsdcKQHIEVLKESLTAKEQRAAiLQTEVDALRLRLEEkes 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 949 TIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNR------RELAEMQRQLKEKTleaeksrltamKMQDEMRLMEEELR 1022
Cdd:pfam10174 360 FLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERkinvlqKKIENLQEQLRDKD-----------KQLAGLKERVKSLQ 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1023 DYQRAQDEALTKrqlLEQTLKDLEYELEA--KSHLKDDRSRL---------VKQMEDKVSQLEMELEEERNNSDLLSERI 1091
Cdd:pfam10174 429 TDSSNTDTALTT---LEEALSEKERIIERlkEQREREDRERLeeleslkkeNKDLKEKVSALQPELTEKESSLIDLKEHA 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1092 SRSREQMEQVRNELLQERAARQDLECDKISLERQ-------------NKDLKSRIIHLEGSYRSSKEglvvqmEARIAEL 1158
Cdd:pfam10174 506 SSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQlkkahnaeeavrtNPEINDRIRLLEQEVARYKE------ESGKAQA 579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1159 E-DRLESEERDRANLQLSNrrlERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKK--LQRE 1235
Cdd:pfam10174 580 EvERLLGILREVENEKNDK---DKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADnsQQLQ 656
|
650 660
....*....|....*....|...
gi 2462546316 1236 LEEQMDMNEHLQGQLNSMKKDLS 1258
Cdd:pfam10174 657 LEELMGALEKTRQELDATKARLS 679
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
638-948 |
2.93e-06 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 51.39 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 638 QNIKEERERMRANLEELRSQHnekvEENSTLQQRLEESEGELRKNLEElfqvkmEREQHQTEIRDLQDQLSEMHDELDSA 717
Cdd:pfam06160 96 DDIEEDIKQILEELDELLESE----EKNREEVEELKDKYRELRKTLLA------NRFSYGPAIDELEKQLAEIEEEFSQF 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 718 krSEDREKGALI---EELLQAKQDLQDLLIAKEEQEDLLRKRERELtalKGALkEEVSSHDQEMdkLKEQY-------DA 787
Cdd:pfam06160 166 --EELTESGDYLearEVLEKLEEETDALEELMEDIPPLYEELKTEL---PDQL-EELKEGYREM--EEEGYalehlnvDK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 788 ELQALRESVEEATKNVEVLasrsntseqDQAGTEMRVKLLQEENEKL--------------QGRSEELERRVAQLQRQIE 853
Cdd:pfam06160 238 EIQQLEEQLEENLALLENL---------ELDEAEEALEEIEERIDQLydllekevdakkyvEKNLPEIEDYLEHAEEQNK 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 854 DLKGD----------EAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKL- 922
Cdd:pfam06160 309 ELKEElervqqsytlNENELERVRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEEFKESLq 388
|
330 340
....*....|....*....|....*....
gi 2462546316 923 ---KEESEQKEQLRRLKNEMENERWHLGK 948
Cdd:pfam06160 389 slrKDELEAREKLDEFKLELREIKRLVEK 417
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1088-1262 |
3.03e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 3.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1088 SERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVvQMEARIAELEDRLESEER 1167
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA-ALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1168 DRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQR---ELEEQMDMNE 1244
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAlraELEAERAELE 177
|
170
....*....|....*...
gi 2462546316 1245 HLQGQLNSMKKDLSRLKK 1262
Cdd:COG4942 178 ALLAELEEERAALEALKA 195
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1073-1237 |
3.18e-06 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 50.53 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1073 LEMELEEERNNSDLLSERISRSREQMEQVRNElLQERAARQDLECDkiSLERQNKDLKSRIIhlegSYRSSKEGLVVQME 1152
Cdd:pfam09787 45 LTLELEELRQERDLLREEIQKLRGQIQQLRTE-LQELEAQQQEEAE--SSREQLQELEEQLA----TERSARREAEAELE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1153 ARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSlTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKL 1232
Cdd:pfam09787 118 RLQEELRYLEEELRRSKATLQSRIKDREAEIEKLRNQLTSKSQS-SSSQSELENRLHQLTETLIQKQTMLEALSTEKNSL 196
|
....*
gi 2462546316 1233 QRELE 1237
Cdd:pfam09787 197 VLQLE 201
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
583-851 |
3.35e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 583 EKIQTLKSRAAGSAQGNNQACNSTSEVKDLLEQkskltiEVAELQRQlqlevknqqnikeerermranLEELRSQHNEkv 662
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK------EIQELQEQ---------------------RIDLKEQIKS-- 851
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 663 eenstLQQRLEESEGELRKNLEELfqvkmerEQHQTEIRDLQDQLSEMhdeldsakrSEDREKgaLIEELLQAKQDLQDL 742
Cdd:TIGR02169 852 -----IEKEIENLNGKKEELEEEL-------EELEAALRDLESRLGDL---------KKERDE--LEAQLRELERKIEEL 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 743 liakEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQA--LRESVEEATKNVEVLASRSNTSEQDQAGT 820
Cdd:TIGR02169 909 ----EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLedVQAELQRVEEEIRALEPVNMLAIQEYEEV 984
|
250 260 270
....*....|....*....|....*....|.
gi 2462546316 821 EMRVKLLQEENEKLQGRSEELERRVAQLQRQ 851
Cdd:TIGR02169 985 LKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
855-1002 |
3.85e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.93 E-value: 3.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 855 LKGDEAKAKETLKKYEGEIRQL-EEALVHARKEEKEAvsaRRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLR 933
Cdd:PRK12704 33 IKEAEEEAKRILEEAKKEAEAIkKEALLEAKEEIHKL---RNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 934 RLKNEMENERWHLGKTIEKLQKEMADIVEASRTstlELQN------------QLDEYKEKNRRELAEMQRQLKEK-TLEA 1000
Cdd:PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQ---ELERisgltaeeakeiLLEKVEEEARHEAAVLIKEIEEEaKEEA 186
|
..
gi 2462546316 1001 EK 1002
Cdd:PRK12704 187 DK 188
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
638-804 |
3.95e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 3.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 638 QNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDEldsa 717
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN---- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 718 krsedREKGAL---IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRE 794
Cdd:COG1579 89 -----KEYEALqkeIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
170
....*....|
gi 2462546316 795 SVEEATKNVE 804
Cdd:COG1579 164 EREELAAKIP 173
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
747-942 |
3.97e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 3.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 747 EEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYD---AELQALRESVEEATKNVEVLasrsntseqdqagtemr 823
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNelqAELEALQAEIDKLQAEIAEA----------------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 824 vkllqeeNEKLQGRSEELERRVAQLQRQIEDLKGDEA----------------------KAKETLKKYEGEIRQLEEALV 881
Cdd:COG3883 78 -------EAEIEERREELGERARALYRSGGSVSYLDVllgsesfsdfldrlsalskiadADADLLEELKADKAELEAKKA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 882 HARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENE 942
Cdd:COG3883 151 ELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1157-1268 |
4.58e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 51.01 E-value: 4.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1157 ELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDehLSLT-DQKDQ----LSLRLKAMKRQVEE---AEEEIDRLESS 1228
Cdd:COG2433 396 EAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEE--LEAElEEKDErierLERELSEARSEERReirKDREISRLDRE 473
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2462546316 1229 KKKLQRELEEQMDMNEHLQGQLNSMK---KDLSRLKKLPSKVL 1268
Cdd:COG2433 474 IERLERELEEERERIEELKRKLERLKelwKLEHSGELVPVKVV 516
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
801-1241 |
4.72e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 50.66 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 801 KNVEVLASRSNTSEQDQAGTEMRvkLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLeeal 880
Cdd:pfam07888 1 KPLDELVTLEEESHGEEGGTDML--LVVPRAELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQ---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 881 vharkeekeavsaRRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADI 960
Cdd:pfam07888 75 -------------RRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 961 VEasrtSTLELQNQLDEYKEKNRRelaeMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQ 1040
Cdd:pfam07888 142 TQ----RVLERETELERMKERAKK----AGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQD 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1041 TLKDLEYELEAKSHLKDDRSRLVKQMedkvSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERaarqdLECDKI 1120
Cdd:pfam07888 214 TITTLTQKLTTAHRKEAENEALLEEL----RSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQAR-----LQAAQL 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1121 SLERQNKDLKSRiihlEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELvmqvddehlSLTDQ 1200
Cdd:pfam07888 285 TLQLADASLALR----EGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEV---------ELGRE 351
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 2462546316 1201 KDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMD 1241
Cdd:pfam07888 352 KDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLE 392
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
764-1116 |
4.95e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 51.06 E-value: 4.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 764 KGALKEEVSSHDQEMDKLKEQYDAELQALRESVEeatknvevLASRSNTSEQDQAGTEM-RVKLLQEENEKLQGRSEELE 842
Cdd:PLN02939 52 KNIAPKQRSSNSKLQSNTDENGQLENTSLRTVME--------LPQKSTSSDDDHNRASMqRDEAIAAIDNEQQTNSKDGE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 843 RrvaQLQRQIEDLKGdeakakeTLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKL 922
Cdd:PLN02939 124 Q---LSDFQLEDLVG-------MIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 923 KEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEAS---RTSTLELQNQLDEYKEKNRRELA-EMQRQLKEKTL 998
Cdd:PLN02939 194 IHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENmllKDDIQFLKAELIEVAETEERVFKlEKERSLLDASL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 999 EAEKSRLTAMKmqdemrlmEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEaKSHLKDDRSRlvkQMEDKVSQLEMELE 1078
Cdd:PLN02939 274 RELESKFIVAQ--------EDVSKLSPLQYDCWWEKVENLQDLLDRATNQVE-KAALVLDQNQ---DLRDKVDKLEASLK 341
|
330 340 350
....*....|....*....|....*....|....*...
gi 2462546316 1079 EErNNSDLLSERIsrsrEQMEQvRNELLQERAARQDLE 1116
Cdd:PLN02939 342 EA-NVSKFSSYKV----ELLQQ-KLKLLEERLQASDHE 373
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
860-1089 |
5.67e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 5.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 860 AKAKETLKKYEGEIRQLEEALvharkeekeavsarRALENELEA--AQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKN 937
Cdd:COG3206 171 EEARKALEFLEEQLPELRKEL--------------EEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 938 EMENERWHLGKTIEKLQKEMADIVEASRTSTL-----ELQNQLDE----YKEKN------RRELAEMQRQLKEktlEAEK 1002
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLraqlaELEAELAElsarYTPNHpdvialRAQIAALRAQLQQ---EAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1003 SRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKshlkddrSRLVKQMEDKVSQLEMELEEERN 1082
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVA-------RELYESLLQRLEEARLAEALTVG 386
|
....*..
gi 2462546316 1083 NSDLLSE 1089
Cdd:COG3206 387 NVRVIDP 393
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
888-1263 |
6.17e-06 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 50.62 E-value: 6.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 888 KEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQ----KEQLRRLKNEMENERWHLGKTIEKLQKEMAdivea 963
Cdd:pfam06160 82 KKAKKALDEIEELLDDIEEDIKQILEELDELLESEEKNREEveelKDKYRELRKTLLANRFSYGPAIDELEKQLA----- 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 964 srtstlELQNQLDEYKEKNRR----ELAEMQRQLKEKTLEaeksrltamkMQDEMRLMEEELRDYQRAQDEALTKRQLLE 1039
Cdd:pfam06160 157 ------EIEEEFSQFEELTESgdylEAREVLEKLEEETDA----------LEELMEDIPPLYEELKTELPDQLEELKEGY 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1040 QTLKDLEYELEAKSHLKDdrsrlVKQMEDKVSQL-----EMELEEERNNSDLLSERISRSREQMEQvrnellqERAARQD 1114
Cdd:pfam06160 221 REMEEEGYALEHLNVDKE-----IQQLEEQLEENlalleNLELDEAEEALEEIEERIDQLYDLLEK-------EVDAKKY 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1115 LE--CDKIS-----LERQNKDLKSRIIHLEGSYRSSKEGLVVQM--EARIAELEDRLESEERDRANLQLSNRRLERKVKE 1185
Cdd:pfam06160 289 VEknLPEIEdylehAEEQNKELKEELERVQQSYTLNENELERVRglEKQLEELEKRYDEIVERLEEKEVAYSELQEELEE 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1186 LVMQVDDehlsLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQ----------------MDMNEHLQGQ 1249
Cdd:pfam06160 369 ILEQLEE----IEEEQEEFKESLQSLRKDELEAREKLDEFKLELREIKRLVEKSnlpglpesyldyffdvSDEIEDLADE 444
|
410
....*....|....
gi 2462546316 1250 LNSMKKDLSRLKKL 1263
Cdd:pfam06160 445 LNEVPLNMDEVNRL 458
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1030-1263 |
6.32e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 6.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1030 EALTKrqlLEQT------LKDLEYELEA-KSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVR 1102
Cdd:COG1196 176 EAERK---LEATeenlerLEDILGELERqLEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1103 NELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRsskeglvvQMEARIAELEDRLESEERDRANLQLSNRRLERK 1182
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEY--------ELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1183 VKELvmqvDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEE-QMDMNEHLQGQLNSMKKDLSRLK 1261
Cdd:COG1196 325 LAEL----EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEaEEELEELAEELLEALRAAAELAA 400
|
..
gi 2462546316 1262 KL 1263
Cdd:COG1196 401 QL 402
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
678-1046 |
6.85e-06 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 50.41 E-value: 6.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 678 ELRKNLE-ELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRsedrekgaLIEEL-----------LQAKQDLQDLLIA 745
Cdd:pfam05701 35 ERRKLVElELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKR--------LIEELklnleraqteeAQAKQDSELAKLR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 746 KEEQEDLLRKRER-----ELTALKGALKEEVS---SHDQEMDKLKEQYDAelqaLRESVEEATKNVEVLASRSNTSEQDQ 817
Cdd:pfam05701 107 VEEMEQGIADEASvaakaQLEVAKARHAAAVAelkSVKEELESLRKEYAS----LVSERDIAIKRAEEAVSASKEIEKTV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 818 AGTEMRVKLLQEENEKLQG---RSEELERRVAQLQRQiedlkgDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSAR 894
Cdd:pfam05701 183 EELTIELIATKESLESAHAahlEAEEHRIGAALAREQ------DKLNWEKELKQAEEELQRLNQQLLSAKDLKSKLETAS 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 895 RALEN---ELEA-AQGNLSQTTQEQKqlsEKLKEESEQKEQLRRLKNEMENERWHLGKTIE--------------KLQKE 956
Cdd:pfam05701 257 ALLLDlkaELAAyMESKLKEEADGEG---NEKKTSTSIQAALASAKKELEEVKANIEKAKDevnclrvaaaslrsELEKE 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 957 MADIVEASRTSTL------ELQNQLD---------EYKEKNRRE-LAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEE 1020
Cdd:pfam05701 334 KAELASLRQREGMasiavsSLEAELNrtkseialvQAKEKEAREkMVELPKQLQQAAQEAEEAKSLAQAAREELRKAKEE 413
|
410 420
....*....|....*....|....*.
gi 2462546316 1021 LRdyqRAQDEALTKRQLLEQTLKDLE 1046
Cdd:pfam05701 414 AE---QAKAAASTVESRLEAVLKEIE 436
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
559-1267 |
7.06e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.82 E-value: 7.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 559 LYNYL----KEGSTDN-DDATK-----RKVNLVFEKIQ-----TLKSRAAGSAQGNNQACNSTSEVK-----DLLEQKSK 618
Cdd:TIGR01612 676 LYNELssivKENAIDNtEDKAKlddlkSKIDKEYDKIQnmetaTVELHLSNIENKKNELLDIIVEIKkhihgEINKDLNK 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 619 LTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENST----LQQRLEES----------EGELRKNLE 684
Cdd:TIGR01612 756 ILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIkdedAKQNYDKSkeyiktisikEDEIFKIIN 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 685 ELFQVKME-----------REQHQTEIRDLQDQLSEMHDELD---SAKRSEDREKG-----ALIEELLQAkqdlqdllIA 745
Cdd:TIGR01612 836 EMKFMKDDflnkvdkfinfENNCKEKIDSEHEQFAELTNKIKaeiSDDKLNDYEKKfndskSLINEINKS--------IE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 746 KEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRES--VEEATKNVEVLASRSNTSEQDQAGTEMR 823
Cdd:TIGR01612 908 EEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNIDTIKESnlIEKSYKDKFDNTLIDKINELDKAFKDAS 987
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 824 VKLLQEENEklqgrseelerrvaQLQRQIEDLKGDEAKAKETLkkyegeirqleeaLVHARKEEKEAVSArraLENELEA 903
Cdd:TIGR01612 988 LNDYEAKNN--------------ELIKYFNDLKANLGKNKENM-------------LYHQFDEKEKATND---IEQKIED 1037
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 904 AQGNLSQTtqeqkqlseklkeESEQKEQLRRLKNEMENErwhLGKTIEKLQKEMADIVEASRTSTLELQNQLDEY----- 978
Cdd:TIGR01612 1038 ANKNIPNI-------------EIAIHTSIYNIIDEIEKE---IGKNIELLNKEILEEAEINITNFNEIKEKLKHYnfddf 1101
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 979 -KEKNRR---ELAEMQRQLKEKTLEAEK--SRLTAMKMQDEMRL--MEEELRDYQRAQDEALTKRQL--LEQTLKDLEYE 1048
Cdd:TIGR01612 1102 gKEENIKyadEINKIKDDIKNLDQKIDHhiKALEEIKKKSENYIdeIKAQINDLEDVADKAISNDDPeeIEKKIENIVTK 1181
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1049 LEAKSHLKDDRSRLVKQM----EDKVSQLEME---LEEERNNSDLLSERISRSREQMEqvrNELLQERAARQDL-ECDKI 1120
Cdd:TIGR01612 1182 IDKKKNIYDEIKKLLNEIaeieKDKTSLEEVKginLSYGKNLGKLFLEKIDEEKKKSE---HMIKAMEAYIEDLdEIKEK 1258
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1121 SLERQNK-----DLKSRIIHLEGSYRSSKEGLVVQME-----ARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQV 1190
Cdd:TIGR01612 1259 SPEIENEmgiemDIKAEMETFNISHDDDKDHHIISKKhdeniSDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHN 1338
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462546316 1191 DDEHLSLTDQKDQLS-LRLKAMKRQVEEAEEEIDRLESSKKKLQRELeeqmDMNEHLQGQLnsmkKDLSRLKKLPSKV 1267
Cdd:TIGR01612 1339 SDINLYLNEIANIYNiLKLNKIKKIIDEVKEYTKEIEENNKNIKDEL----DKSEKLIKKI----KDDINLEECKSKI 1408
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
775-924 |
7.23e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.77 E-value: 7.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 775 DQEMDKLKEQYD---AELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEEL--ERRVAQLQ 849
Cdd:COG1579 16 DSELDRLEHRLKelpAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEALQ 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462546316 850 RQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAqgnLSQTTQEQKQLSEKLKE 924
Cdd:COG1579 96 KEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE---LAELEAELEELEAEREE 167
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
678-881 |
7.73e-06 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 50.44 E-value: 7.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 678 ELRKNLEELFQvkmereqhqTEIRDLQDQLSEMHDELDSAKRSEDREKGALIE---ELLQAKQDLQDLLIAKEEQEDLLR 754
Cdd:pfam13166 268 ERKAALEAHFD---------DEFTEFQNRLQKLIEKVESAISSLLAQLPAVSDlasLLSAFELDVEDIESEAEVLNSQLD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 755 KRERELTAlkgalKEEVSSHDQEMDklkeQYDAELQALRESVeeatKNVEVLASRSN--TSEQDQAGTEMRVKLLQEENE 832
Cdd:pfam13166 339 GLRRALEA-----KRKDPFKSIELD----SVDAKIESINDLV----ASINELIAKHNeiTDNFEEEKNKAKKKLRLHLVE 405
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462546316 833 KLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALV 881
Cdd:pfam13166 406 EFKSEIDEYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQLR 454
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
839-1227 |
1.03e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 49.83 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 839 EELERRVAQLQRQIEDLKGDEAKAKEtlkkyegEIRQLEEALVHARKEekeaVSARR--------ALENELEAAQGNLSQ 910
Cdd:PRK04778 115 DLIEEDIEQILEELQELLESEEKNRE-------EVEQLKDLYRELRKS----LLANRfsfgpaldELEKQLENLEEEFSQ 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 911 TtqeqkqlsEKLKEE---SEQKEQLRRLKNEMENerwhlgktiekLQKEMADIVEASRTSTLELQNQLDEykeknrreLA 987
Cdd:PRK04778 184 F--------VELTESgdyVEAREILDQLEEELAA-----------LEQIMEEIPELLKELQTELPDQLQE--------LK 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 988 EMQRQLKEktleaEKSRLTAMKMQDEMRLMEEELRDYQRA-----QDEALTKRQLLEQTLKDL----EYELEAKshlkdd 1058
Cdd:PRK04778 237 AGYRELVE-----EGYHLDHLDIEKEIQDLKEQIDENLALleeldLDEAEEKNEEIQERIDQLydilEREVKAR------ 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1059 rsrlvKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLEcdkiSLERQNKDLKSRIIHLEG 1138
Cdd:PRK04778 306 -----KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLE----SLEKQYDEITERIAEQEI 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1139 SYRSSKEGL------VVQMEARIAELEDRL------ESEERDRAN-----LQLSNRRLER--------KVKELVMQVDDE 1193
Cdd:PRK04778 377 AYSELQEELeeilkqLEEIEKEQEKLSEMLqglrkdELEAREKLEryrnkLHEIKRYLEKsnlpglpeDYLEMFFEVSDE 456
|
410 420 430
....*....|....*....|....*....|....
gi 2462546316 1194 HLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLES 1227
Cdd:PRK04778 457 IEALAEELEEKPINMEAVNRLLEEATEDVETLEE 490
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
919-1259 |
1.12e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.90 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 919 SEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNqlDEYKEKNRRELAEMQRQlkEKTL 998
Cdd:PLN02939 34 SCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQ--KSTSSDDDHNRASMQRD--EAIA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 999 EAEKSRLTamKMQDEMRLMEEELRDY----QRAQDEALTKRQLLEQTLKDLEYELEAKSHLkddrsrlvkqmEDKVSQLE 1074
Cdd:PLN02939 110 AIDNEQQT--NSKDGEQLSDFQLEDLvgmiQNAEKNILLLNQARLQALEDLEKILTEKEAL-----------QGKINILE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1075 MELEEERNNSDLLSE---RISRSREQMEQVRNELLQERAARQDLEcdkISLERQNKDLKSRIIHLEGSYRSSKEGLVvqm 1151
Cdd:PLN02939 177 MRLSETDARIKLAAQekiHVEILEEQLEKLRNELLIRGATEGLCV---HSLSKELDVLKEENMLLKDDIQFLKAELI--- 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1152 eaRIAELEDRLESEERDRANLQLSNRRLERKVkeLVMQVDDEHLS------LTDQKDQLSLRLKAMKRQVEEA------- 1218
Cdd:PLN02939 251 --EVAETEERVFKLEKERSLLDASLRELESKF--IVAQEDVSKLSplqydcWWEKVENLQDLLDRATNQVEKAalvldqn 326
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2462546316 1219 ---EEEIDRLESSKK--KLQRELEEQMDMnehLQGQLNSMKKDLSR 1259
Cdd:PLN02939 327 qdlRDKVDKLEASLKeaNVSKFSSYKVEL---LQQKLKLLEERLQA 369
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1025-1282 |
1.21e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1025 QRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNE 1104
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1105 LlqeraarqdlecdkislERQNKDLKSRIIHLEGSYRSSKEGLVVQMEAriaeledrLESEERDRANLQLSNRRLERKVK 1184
Cdd:COG4942 99 L-----------------EAQKEELAELLRALYRLGRQPPLALLLSPED--------FLDAVRRLQYLKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1185 ELVMQVDDehlsLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKKLP 1264
Cdd:COG4942 154 ELRADLAE----LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
250
....*....|....*...
gi 2462546316 1265 SKVLDDMDDDDDLSTDGG 1282
Cdd:COG4942 230 ARLEAEAAAAAERTPAAG 247
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
720-1005 |
1.28e-05 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 48.75 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 720 SEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEA 799
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 800 TKNVEVLASRSNTSEQdqagtemrVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKyegeIRQLEEA 879
Cdd:COG1340 81 DELNEKLNELREELDE--------LRKELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKELVEK----IKELEKE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 880 LvHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMAD 959
Cdd:COG1340 149 L-EKAKKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADE 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2462546316 960 I---VEASRTSTLELQNQLDEYKEKNRrelaEMQRQLKEKTLEAEKSRL 1005
Cdd:COG1340 228 LheeIIELQKELRELRKELKKLRKKQR----ALKREKEKEELEEKAEEI 272
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
731-894 |
1.30e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 731 ELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEevsshdqeMDKLKEQYDAELQALRESVEEATKNvevLASRS 810
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELED--------LEKEIKRLELEIEEVEARIKKYEEQ---LGNVR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 811 NTSEQDQAGTEM-----RVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARK 885
Cdd:COG1579 87 NNKEYEALQKEIeslkrRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
....*....
gi 2462546316 886 EEKEAVSAR 894
Cdd:COG1579 167 ELAAKIPPE 175
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1017-1197 |
1.50e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1017 MEEELRDYQRAQdEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSRE 1096
Cdd:COG1579 2 MPEDLRALLDLQ-ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1097 QMEQVRN--ELlqeraarQDLECDKISLERQNKDLKSRIIHLEGSyRSSKEGLVVQMEARIAELEDRLESEERDR----A 1170
Cdd:COG1579 81 QLGNVRNnkEY-------EALQKEIESLKRRISDLEDEILELMER-IEELEEELAELEAELAELEAELEEKKAELdeelA 152
|
170 180
....*....|....*....|....*..
gi 2462546316 1171 NLQLSNRRLERKVKELVMQVDDEHLSL 1197
Cdd:COG1579 153 ELEAELEELEAEREELAAKIPPELLAL 179
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
607-870 |
1.55e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 49.24 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQLEvknQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEgelrknlEEL 686
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTY---NKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELT-------DEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 687 FQVKMEREQHQTEIRDLQDQLSEMHDELDS-AKRSEDREKGAlieELLQAKQDLqdlliakEEQEDLLRKrereltalkg 765
Cdd:PHA02562 244 LNLVMDIEDPSAALNKLNTAAAKIKSKIEQfQKVIKMYEKGG---VCPTCTQQI-------SEGPDRITK---------- 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 aLKEEVSSHDQEMDKLKEQYDaELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRV 845
Cdd:PHA02562 304 -IKDKLKELQHSLEKLDTAID-ELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEEL 381
|
250 260
....*....|....*....|....*
gi 2462546316 846 AQLQRQIEDLKgdEAKAKETLKKYE 870
Cdd:PHA02562 382 AKLQDELDKIV--KTKSELVKEKYH 404
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
718-1237 |
1.61e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 718 KRSEDREKGALIEELLQAKQDLQ------DLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKlkeQYDAELQA 791
Cdd:pfam05483 104 KENKLQENRKIIEAQRKAIQELQfenekvSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTK---KYEYEREE 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 792 LRESVEEATKNVE--VLASRSNTSEQDQAGTEMRVKLlQEENEKLQGRSEELERRVAQLQRQIedlkgdeakaketlkky 869
Cdd:pfam05483 181 TRQVYMDLNNNIEkmILAFEELRVQAENARLEMHFKL-KEDHEKIQHLEEEYKKEINDKEKQV----------------- 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 870 egeirqleeALVHARKEEKEavSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRlknEMENERWHLGKT 949
Cdd:pfam05483 243 ---------SLLLIQITEKE--NKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK---ELEDIKMSLQRS 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 950 IEKLQKEMADIVEASRTSTlelqnQLDEYKEknrrelAEMQRQLKEKTLEAeksrLTAMKMQDEMRLMEEELRDYQRAQD 1029
Cdd:pfam05483 309 MSTQKALEEDLQIATKTIC-----QLTEEKE------AQMEELNKAKAAHS----FVVTEFEATTCSLEELLRTEQQRLE 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1030 EALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNnsdllSERISRSREQMEQVRNELLQER 1109
Cdd:pfam05483 374 KNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQ-----FEKIAEELKGKEQELIFLLQAR 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1110 aarqdlecdkislERQNKDLKSRIIhlegSYRSSKEGLVVQMEariaELEDRLESEERDRANLQLSNRRLERKVKELVMQ 1189
Cdd:pfam05483 449 -------------EKEIHDLEIQLT----AIKTSEEHYLKEVE----DLKTELEKEKLKNIELTAHCDKLLLENKELTQE 507
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 2462546316 1190 VDDEHLSLTDQKDQLSlrlkAMKRQVEEAEEEIDRLESSKKKLQRELE 1237
Cdd:pfam05483 508 ASDMTLELKKHQEDII----NCKKQEERMLKQIENLEEKEMNLRDELE 551
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
761-1113 |
1.70e-05 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 48.98 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 761 TALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEE 840
Cdd:pfam09731 45 EVVLYALGEDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEVAEEEKEATKDAAEAKAQLPKSEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 841 lerrvaqlqrqiEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVS-ARRALENELEAAQGNLSQTTQEQKQLS 919
Cdd:pfam09731 125 ------------EKEKALEEVLKEAISKAESATAVAKEAKDDAIQAVKAHTDsLKEASDTAEISREKATDSALQKAEALA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 920 EKLKE--ESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLelqnqLDEYKEKNRRELAEMQRQLKEKT 997
Cdd:pfam09731 193 EKLKEviNLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKL-----VDQYKELVASERIVFQQELVSIF 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 998 --LEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRqllEQTLKDLEYELEA-KSHLKDDRSRLVKQMEDKVS--- 1071
Cdd:pfam09731 268 pdIIPVLKEDNLLSNDDLNSLIAHAHREIDQLSKKLAELK---KREEKHIERALEKqKEELDKLAEELSARLEEVRAade 344
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462546316 1072 --------------------QLEMELE------EERNNSDLLSERISRSREQMEQVRNELLQERAARQ 1113
Cdd:pfam09731 345 aqlrleferereeiresyeeKLRTELErqaeahEEHLKDVLVEQEIELQREFLQDIKEKVEEERAGRL 412
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
607-762 |
1.85e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQlevknqqNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELR--KNLE 684
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELA-------ALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 685 ELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGAL---IEELLQAKQDLQDLLIAKEEQEDLLRKRERELT 761
Cdd:COG1579 90 EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELaelEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
.
gi 2462546316 762 A 762
Cdd:COG1579 170 A 170
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
866-1042 |
1.85e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 866 LKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENErwh 945
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 946 lgKTIEKLQKEMADIvEASRTSTLELQNQLDEYKEKNRRELAEMQRQLK--EKTLEAEKSRLtamkmqdemrlmEEELRD 1023
Cdd:COG1579 89 --KEYEALQKEIESL-KRRISDLEDEILELMERIEELEEELAELEAELAelEAELEEKKAEL------------DEELAE 153
|
170
....*....|....*....
gi 2462546316 1024 YQRAQDEALTKRQLLEQTL 1042
Cdd:COG1579 154 LEAELEELEAEREELAAKI 172
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
971-1184 |
2.20e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 971 LQNQLDEYKEKNRRELAEMQRQLKEktleaeksrltamkMQDEMRLMEEELRDYQRAQDEALT--KRQLLEQTLKDLEYE 1048
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPE--------------LRKELEEAEAALEEFRQKNGLVDLseEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1049 L-EAKSHLKDDRSRLvKQMEDKVSQLEMELEEERNNSdllseRISRSREQMEQVRNELLQERAARQDLECDKISLERQNK 1127
Cdd:COG3206 228 LaEARAELAEAEARL-AALRAQLGSGPDALPELLQSP-----VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA 301
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1128 DLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSN---RRLERKVK 1184
Cdd:COG3206 302 ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEaelRRLEREVE 361
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1035-1239 |
2.37e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1035 RQLLEQTLKDLEYELEAKShlKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLsERISRSREQMEQVRNEL--LQERAAR 1112
Cdd:COG4717 44 RAMLLERLEKEADELFKPQ--GRKPELNLKELKELEEELKEAEEKEEEYAELQ-EELEELEEELEELEAELeeLREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1113 QDLECDKISLERQNKDLKSRIIHLEGSYRsskeglvvQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDD 1192
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAELPERLE--------ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEE 192
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2462546316 1193 EHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQ 1239
Cdd:COG4717 193 ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
608-758 |
2.72e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 608 EVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNE--KVEENSTLQQRLEESEGELRKNLEE 685
Cdd:COG1579 32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrNNKEYEALQKEIESLKRRISDLEDE 111
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462546316 686 LFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLliAKEEQEDLLRKRER 758
Cdd:COG1579 112 ILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL--AAKIPPELLALYER 182
|
|
| Tropomyosin |
pfam00261 |
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 ... |
866-1089 |
2.75e-05 |
|
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites. The protein is best known for its role in regulating the interaction between actin and myosin in muscle contraction, but is also involved in the organization and dynamics of the cytoskeleton in non-muscle cells. There are multiple cell-specific isoforms, expressed by alternative promoters and alternative RNA processing of at least four genes. Muscle isoforms of tropomyosin are characterized by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region.
Pssm-ID: 459736 [Multi-domain] Cd Length: 235 Bit Score: 46.95 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 866 LKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERwh 945
Cdd:pfam00261 3 MQQIKEELDEAEERLKEAMKKLEEAEKRAEKAEAEVAALNRRIQLLEEELERTEERLAEALEKLEEAEKAADESERGR-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 946 lgKTIE---KLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELR 1022
Cdd:pfam00261 81 --KVLEnraLKDEEKMEILEAQLKEAKEIAEEADRKYEEVARKLVVVEGDLERAEERAELAESKIVELEEELKVVGNNLK 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462546316 1023 DYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSE 1089
Cdd:pfam00261 159 SLEASEEKASEREDKYEEQIRFLTEKLKEAETRAEFAERSVQKLEKEVDRLEDELEAEKEKYKAISE 225
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
726-979 |
3.07e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.24 E-value: 3.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 726 GALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKgalKEEVSSHDQEMDKLKEQYDAELQalresveeatknvev 805
Cdd:PRK12704 17 GAVIGYFVRKKIAEAKIKEAEEEAKRILEEAKKEAEAIK---KEALLEAKEEIHKLRNEFEKELR--------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 806 lasrsntseqdqagtemrvkllqEENEKLQGRSEELERRVAQLQRQIEDLKgdeaKAKETLKKYEGEIRQLEEALvhaRK 885
Cdd:PRK12704 79 -----------------------ERRNELQKLEKRLLQKEENLDRKLELLE----KREEELEKKEKELEQKQQEL---EK 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 886 EEKEAVSARRALENELEaaqgNLSQTTQEQ--KQLSEKLKEESEQK--EQLRRLKNEMENERWHLGKTI--EKLQKEMAD 959
Cdd:PRK12704 129 KEEELEELIEEQLQELE----RISGLTAEEakEILLEKVEEEARHEaaVLIKEIEEEAKEEADKKAKEIlaQAIQRCAAD 204
|
250 260
....*....|....*....|
gi 2462546316 960 IVEASRTSTLELQNqlDEYK 979
Cdd:PRK12704 205 HVAETTVSVVNLPN--DEMK 222
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
750-1263 |
3.37e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.36 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 750 EDLLRKRERELTALKGALKEEVSSHD---QEMDKLKEQYDAELQALrESVEEATKNVEVLASRSNTSEQDQAGTEMRVKL 826
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADDEKSHSitlKEIERLSIEYNNAMDDY-NNLKSALNELSSLEDMKNRYESEIKTAESDLSM 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 827 LQEENEKLQGRSEELERRVA--------------QLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEaLVHARKEEKEAVS 892
Cdd:PRK01156 268 ELEKNNYYKELEERHMKIINdpvyknrnyindyfKYKNDIENKKQILSNIDAEINKYHAIIKKLSV-LQKDYNDYIKKKS 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 893 ARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADI------VEASRT 966
Cdd:PRK01156 347 RYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEInvklqdISSKVS 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 967 STLELQNQLDEYKEKNRRELAEMQRQLK----EKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTL 1042
Cdd:PRK01156 427 SLNQRIRALRENLDELSRNMEMLNGQSVcpvcGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRK 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1043 KDLE----YELEAKSHLKDDRSRLVKQMEDKVSQLEmelEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECD 1118
Cdd:PRK01156 507 EYLEseeiNKSINEYNKIESARADLEDIKIKINELK---DKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIE 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1119 KI-----SLERQNKDLKSRIIHLEGSYRSSKEglvvQMEARIAELEDRLeseerdranlqlsnRRLERKVKELVmqvdde 1193
Cdd:PRK01156 584 TNrsrsnEIKKQLNDLESRLQEIEIGFPDDKS----YIDKSIREIENEA--------------NNLNNKYNEIQ------ 639
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1194 hlSLTDQKDQLSLRLKAMKRQVEEaeeeIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKKL 1263
Cdd:PRK01156 640 --ENKILIEKLRGKIDNYKKQIAE----IDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLEST 703
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1064-1262 |
3.49e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.97 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1064 KQMEDKVSqLEMELEEERNNSDLL-----SERISRSREQMEQVRNELLQERAA--------RQDLECDKISLERQNKDLK 1130
Cdd:pfam07888 1 KPLDELVT-LEEESHGEEGGTDMLlvvprAELLQNRLEECLQERAELLQAQEAanrqrekeKERYKRDREQWERQRRELE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1131 SRIIHLEGSYRSSKEGlVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVddehlsltdqkdqlslrlKA 1210
Cdd:pfam07888 80 SRVAELKEELRQSREK-HEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDI------------------KT 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462546316 1211 MKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKK 1262
Cdd:pfam07888 141 LTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSK 192
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
879-1097 |
3.84e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.52 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 879 ALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLkeeSEQKEQLRRLKNEmenerwhlgktIEKLQKEMA 958
Cdd:COG3883 10 TPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEY---NELQAELEALQAE-----------IDKLQAEIA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 959 diveasrtstlELQNQLDEYKEKNRRELAEMQRQ----------LKEKTLEAEKSRLTAMKM-----QDEMRLMEEELRD 1023
Cdd:COG3883 76 -----------EAEAEIEERREELGERARALYRSggsvsyldvlLGSESFSDFLDRLSALSKiadadADLLEELKADKAE 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462546316 1024 YQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQ 1097
Cdd:COG3883 145 LEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
667-1005 |
3.92e-05 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 47.93 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 667 TLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELdSAKRSEDREKGALIEELLQAKQDL------- 739
Cdd:pfam06160 90 EIEELLDDIEEDIKQILEELDELLESEEKNREEVEELKDKYRELRKTL-LANRFSYGPAIDELEKQLAEIEEEfsqfeel 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 740 ---QDLLIAKEEQEDL---LRKRERELTALKGALKEEVSSHDQEMDKLKEQY---------------DAELQALRESVEE 798
Cdd:pfam06160 169 tesGDYLEAREVLEKLeeeTDALEELMEDIPPLYEELKTELPDQLEELKEGYremeeegyalehlnvDKEIQQLEEQLEE 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 799 ATKNVEVLasrsntsEQDQAgtemrvkllQEENEKLQGRSEELerrVAQLQRqiedlkgdEAKAKetlKKYEGEIRQLEE 878
Cdd:pfam06160 249 NLALLENL-------ELDEA---------EEALEEIEERIDQL---YDLLEK--------EVDAK---KYVEKNLPEIED 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 879 ALVHAR------KEEKEAVSARRAL-ENELEAAQG---NLSQTTQEQKQLSEKLKEE----SEQKEQLRRLKNEMEnerw 944
Cdd:pfam06160 299 YLEHAEeqnkelKEELERVQQSYTLnENELERVRGlekQLEELEKRYDEIVERLEEKevaySELQEELEEILEQLE---- 374
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 945 hlgkTIEKLQKEMADIVEASRTSTLELQNQLDEYKeknrRELAEMQRQLkektleaEKSRL 1005
Cdd:pfam06160 375 ----EIEEEQEEFKESLQSLRKDELEAREKLDEFK----LELREIKRLV-------EKSNL 420
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
767-1087 |
4.52e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.20 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 767 LKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVA 846
Cdd:COG4372 4 LGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 847 QLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEES 926
Cdd:COG4372 84 ELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 927 EQKEQLRRLKNEMENErwHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLT 1006
Cdd:COG4372 164 EELAALEQELQALSEA--EAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1007 AMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDL 1086
Cdd:COG4372 242 LELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAAL 321
|
.
gi 2462546316 1087 L 1087
Cdd:COG4372 322 L 322
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
500-944 |
5.39e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.59 E-value: 5.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 500 ATATLMLQNRATATSPDSGAKKISVKTFPSASNTQATPDLLKGQQELTQQTNEEtakqilynyLKEGSTDNDDATKRKVN 579
Cdd:PLN02939 32 AVSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVME---------LPQKSTSSDDDHNRASM 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 580 LVFEKIqtlksraagSAQGNNQACNSTSEvkdllEQKSKLTIEvaELQRQLQLEVKNQQNIKEERERMRANLEELRSQHN 659
Cdd:PLN02939 103 QRDEAI---------AAIDNEQQTNSKDG-----EQLSDFQLE--DLVGMIQNAEKNILLLNQARLQALEDLEKILTEKE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 660 EKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQhqteIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDL 739
Cdd:PLN02939 167 ALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQ----LEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 740 QDL---LIAKEEQEDLLRKRERELTALKGALKE---EVSSHDQEMDKLKE-QYDAelqaLRESVEeatkNVEVLASRSnT 812
Cdd:PLN02939 243 QFLkaeLIEVAETEERVFKLEKERSLLDASLRElesKFIVAQEDVSKLSPlQYDC----WWEKVE----NLQDLLDRA-T 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 813 SEQDQAGtemrvkLLQEENEKLQGRSEELErrvaqlqrqiEDLKgdEAK-AKETLKKYE---GEIRQLEEalvHARKEEK 888
Cdd:PLN02939 314 NQVEKAA------LVLDQNQDLRDKVDKLE----------ASLK--EANvSKFSSYKVEllqQKLKLLEE---RLQASDH 372
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 889 EAVSARRALENELEAAQGNLSqttqeqkqlseKLKEESEqKEQLRRLKNEMENERW 944
Cdd:PLN02939 373 EIHSYIQLYQESIKEFQDTLS-----------KLKEESK-KRSLEHPADDMPSEFW 416
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
820-1169 |
6.24e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.82 E-value: 6.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 820 TEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALEN 899
Cdd:COG4372 22 TGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 900 ELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYK 979
Cdd:COG4372 102 ELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEA 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 980 EKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEyeleakshLKDDR 1059
Cdd:COG4372 182 EQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDK--------EELLE 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1060 SRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGS 1139
Cdd:COG4372 254 EVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALA 333
|
330 340 350
....*....|....*....|....*....|
gi 2462546316 1140 YRSSKEGLVVQMEARIAELEDRLESEERDR 1169
Cdd:COG4372 334 ILLAELADLLQLLLVGLLDNDVLELLSKGA 363
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
623-901 |
6.67e-05 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 47.33 E-value: 6.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 623 VAELQRQLQlEVK-NQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEES-------EGELRKNLEELFQVKMERE 694
Cdd:pfam05701 295 LASAKKELE-EVKaNIEKAKDEVNCLRVAAASLRSELEKEKAELASLRQREGMAsiavsslEAELNRTKSEIALVQAKEK 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 695 QHQTEIRDLQDQLSEMHDELDSAKrsedrekgalieELLQAKQDlqDLLIAKEEQEDLLRKRERELTALKGALKEEVSSH 774
Cdd:pfam05701 374 EAREKMVELPKQLQQAAQEAEEAK------------SLAQAARE--ELRKAKEEAEQAKAAASTVESRLEAVLKEIEAAK 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 775 DQEMDKLkeqydAELQALRESveeatknvevlasRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELE----RRVAQLQR 850
Cdd:pfam05701 440 ASEKLAL-----AAIKALQES-------------ESSAESTNQEDSPRGVTLSLEEYYELSKRAHEAEelanKRVAEAVS 501
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 851 QIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENEL 901
Cdd:pfam05701 502 QIEEAKESELRSLEKLEEVNREMEERKEALKIALEKAEKAKEGKLAAEQEL 552
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
693-1030 |
7.51e-05 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 47.16 E-value: 7.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 693 REQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDL-----LIAKEEQEDLLRKRERELTA----- 762
Cdd:PLN03229 424 REAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLeyteaVIAMGLQERLENLREEFSKAnsqdq 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 763 -LKGALKEEVsshdqemDKLKEQYDAELQAL--RESVEEATKNVEVLASRSNTSEQDQAGTEMRvkllQEENEKLQgrsE 839
Cdd:PLN03229 504 lMHPVLMEKI-------EKLKDEFNKRLSRApnYLSLKYKLDMLNEFSRAKALSEKKSKAEKLK----AEINKKFK---E 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 840 ELERrvAQLQRQIEDLKGDEAKAKetLKKYEGEIRQLEEALVHARKE-EKEAVSARRALENELEAAQGNLSQTTQEQ--- 915
Cdd:PLN03229 570 VMDR--PEIKEKMEALKAEVASSG--ASSGDELDDDLKEKVEKMKKEiELELAGVLKSMGLEVIGVTKKNKDTAEQTppp 645
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 916 --KQLSEKLKEESEQKeqLRRLKNEMEnerwhLGKTIEKLQKEMAdivEASRTSTLELQNQLDEYKEKNRRELAEM--QR 991
Cdd:PLN03229 646 nlQEKIESLNEEINKK--IERVIRSSD-----LKSKIELLKLEVA---KASKTPDVTEKEKIEALEQQIKQKIAEAlnSS 715
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 2462546316 992 QLKEK--TLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDE 1030
Cdd:PLN03229 716 ELKEKfeELEAELAAARETAAESNGSLKNDDDKEEDSKEDG 756
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
638-1116 |
7.81e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.87 E-value: 7.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 638 QNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKmereqhqtEIRDLQDQLSEMHDELDSA 717
Cdd:COG5185 110 PNYEWSADILISLLYLYKSEIVALKDELIKVEKLDEIADIEASYGEVETGIIK--------DIFGKLTQELNQNLKKLEI 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 718 KRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLrkrerELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVE 797
Cdd:COG5185 182 FGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGS-----ESTLLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLE 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 798 EatknveVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETlkkyegeirqle 877
Cdd:COG5185 257 K------LVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQL------------ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 878 ealvHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQK---EQLRRLKNEMENerwhLGKTIEKLQ 954
Cdd:COG5185 319 ----AAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIvgeVELSKSSEELDS----FKDTIESTK 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 955 KEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEksrltamKMQDEMRLMEEELRDYQRAQDEALTK 1034
Cdd:COG5185 391 ESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNE-------EVSKLLNELISELNKVMREADEESQS 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1035 RqlLEQTLKDLEYELEAKshlKDDRSRLVKQMEDKVSQLEMELEEERNNsdlLSERISRSREQMEQVRNELLQERAARQD 1114
Cdd:COG5185 464 R--LEEAYDEINRSVRSK---KEDLNEELTQIESRVSTLKATLEKLRAK---LERQLEGVRSKLDQVAESLKDFMRARGY 535
|
..
gi 2462546316 1115 LE 1116
Cdd:COG5185 536 AH 537
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
777-1262 |
8.37e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 8.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 777 EMDKLKEQYDAELQALResveeATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQlqrqiedlk 856
Cdd:TIGR00606 167 EGKALKQKFDEIFSATR-----YIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQ--------- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 857 gdEAKAKETLKKYEGEIRQLEEALvharKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESE-QKEQLRRL 935
Cdd:TIGR00606 233 --LESSREIVKSYENELDPLKNRL----KEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQgTDEQLNDL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 936 KN-------EMENERWHLGKTIEKLQKEMADIVEASRTSTLE---LQNQLDEYKEKNR-RELAEMQRQLKEKTLEAEKSR 1004
Cdd:TIGR00606 307 YHnhqrtvrEKERELVDCQRELEKLNKERRLLNQEKTELLVEqgrLQLQADRHQEHIRaRDSLIQSLATRLELDGFERGP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1005 LTAMKMQDEMRLMEEelrdyqRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERN-- 1082
Cdd:TIGR00606 387 FSERQIKNFHTLVIE------RQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFvi 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1083 ----NSDLLSERISRSREQMEQVRNEL--LQERAARQDLECDKISLERQNKDL--KSRIIHLEGSYRSSKEGLVVQMEAR 1154
Cdd:TIGR00606 461 kelqQLEGSSDRILELDQELRKAERELskAEKNSLTETLKKEVKSLQNEKADLdrKLRKLDQEMEQLNHHTTTRTQMEML 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1155 IaelEDRLESEERDRANLQLSNRRLERKVKEL--VMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKL 1232
Cdd:TIGR00606 541 T---KDKMDKDEQIRKIKSRHSDELTSLLGYFpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESK 617
|
490 500 510
....*....|....*....|....*....|....*.
gi 2462546316 1233 QRELEEQMDM------NEHLQGQLNSMKKDLSRLKK 1262
Cdd:TIGR00606 618 EEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSK 653
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
828-1261 |
8.57e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 46.75 E-value: 8.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 828 QEENEKLQGRSEELE-RRVAQLQRQIEDLKGDEAKAKetLKKYEGEIRQLEEALVHArkeEKEAVSARRALeneleaaqg 906
Cdd:PRK04778 63 EEKFEEWRQKWDEIVtNSLPDIEEQLFEAEELNDKFR--FRKAKHEINEIESLLDLI---EEDIEQILEEL--------- 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 907 nlsqttQEQKQLSEKLKEESEQ-KEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEasrtstlelqnQLDEYKEKNR-- 983
Cdd:PRK04778 129 ------QELLESEEKNREEVEQlKDLYRELRKSLLANRFSFGPALDELEKQLENLEE-----------EFSQFVELTEsg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 984 --RELAEMQRQLKEKTLEAEKsrltamkmqdemrLMEEELRDYQRAQDEALTKRQLLEQTLKDLEyelEAKSHLKDDR-- 1059
Cdd:PRK04778 192 dyVEAREILDQLEEELAALEQ-------------IMEEIPELLKELQTELPDQLQELKAGYRELV---EEGYHLDHLDie 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1060 SRLvKQMEDKVSQL-----EMELEEERNNSDLLSERISRSREQMEQvrnellqERAARQDLE--CDKIS-----LERQNK 1127
Cdd:PRK04778 256 KEI-QDLKEQIDENlalleELDLDEAEEKNEEIQERIDQLYDILER-------EVKARKYVEknSDTLPdflehAKEQNK 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1128 DLKSRIIHLEGSYR-SSKEGLVV-QMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDehlsLTDQKDQLS 1205
Cdd:PRK04778 328 ELKEEIDRVKQSYTlNESELESVrQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE----IEKEQEKLS 403
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462546316 1206 LRLKAMKRQVEEAEEEIDRLESSKKKLQRELE---------EQMDMNEHLQGQLNSMKKDLSRLK 1261
Cdd:PRK04778 404 EMLQGLRKDELEAREKLERYRNKLHEIKRYLEksnlpglpeDYLEMFFEVSDEIEALAEELEEKP 468
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
734-1040 |
8.57e-05 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 46.90 E-value: 8.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 734 QAKQDLQDLL--IAKEEQEDLLRKRERELTALKGALKE--EVSSHDQEMDKLKEQYDAELQA-LRESVEEATKNVEVLAS 808
Cdd:pfam13779 463 EALDEVADLLweLALRIEDGDLSDAERRLRAAQERLSEalERGASDEEIAKLMQELREALDDyMQALAEQAQQNPQDLQQ 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 809 RsntseQDQAGTEMRVKLLQE-----ENEKLQGRSEELERRVAQLQRQIEDLkgdeaKAKETLKKYEGEIRQLEEALvha 883
Cdd:pfam13779 543 P-----DDPNAQEMTQQDLQRmldriEELARSGRRAEAQQMLSQLQQMLENL-----QAGQPQQQQQQGQSEMQQAM--- 609
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 884 rkeekeavsarraleNEleaaqgnLSQTTQEQKQLSEKLKEESEQKEQLRrlkNEMENERWHLGKTIEKLQKEMADIVEA 963
Cdd:pfam13779 610 ---------------DE-------LGDLLREQQQLLDETFRQLQQQGGQQ---QGQPGQQGQQGQGQQPGQGGQQPGAQM 664
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 964 SRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTamKMQDEMRLMEEELR--DYQRAQD------EALTK- 1034
Cdd:pfam13779 665 PPQGGAEALGDLAERQQALRRRLEELQDELKELGGKEPGQALG--DAGRAMRDAEEALGqgDLAGAVDaqgralEALRKg 742
|
....*..
gi 2462546316 1035 -RQLLEQ 1040
Cdd:pfam13779 743 aQQLAEA 749
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
723-1042 |
1.09e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.43 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 723 REKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDaELQALRESveeatkn 802
Cdd:pfam07888 41 QERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYK-ELSASSEE------- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 803 vevLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEdlkgdeaKAKETLKKYEGEIRQLEEALVH 882
Cdd:pfam07888 113 ---LSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAK-------KAGAQRKEEEAERKQLQAKLQQ 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 883 ARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMEN--ERWHLG-KTIEKLQKEMAD 959
Cdd:pfam07888 183 TEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSlqERLNASeRKVEGLGEELSS 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 960 IVEASRTSTLELQnqldeykeKNRRELAEMQRQLKEKTL-----------EAEKSRLTAMKMQDEMRLMEEELRDYQRAQ 1028
Cdd:pfam07888 263 MAAQRDRTQAELH--------QARLQAAQLTLQLADASLalregrarwaqERETLQQSAEADKDRIEKLSAELQRLEERL 334
|
330
....*....|....
gi 2462546316 1029 DEALTKRQLLEQTL 1042
Cdd:pfam07888 335 QEERMEREKLEVEL 348
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
893-1138 |
1.27e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 893 ARRALENELEAAQGNLSQTTQEQKQLSEKLKEE--SEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADiveasRTSTLE 970
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEalLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQ-----KEENLD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 971 LQnqlDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQraQDEAltKRQLLEQTlkdleyele 1050
Cdd:PRK12704 100 RK---LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT--AEEA--KEILLEKV--------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1051 aKSHLKDDRSRLVKQMEDkvsqlEMELEEERNNSDLLSERISRSreQMEQVRNELLqeraARQDLECDkislerqnkDLK 1130
Cdd:PRK12704 164 -EEEARHEAAVLIKEIEE-----EAKEEADKKAKEILAQAIQRC--AADHVAETTV----SVVNLPND---------EMK 222
|
....*...
gi 2462546316 1131 SRIIHLEG 1138
Cdd:PRK12704 223 GRIIGREG 230
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
793-943 |
1.48e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 46.36 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 793 RESVEEATKNVEVLASRSNTSEQDQagtemrvkllQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKyege 872
Cdd:PRK00409 508 KKLIGEDKEKLNELIASLEELEREL----------EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK---- 573
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462546316 873 irQLEEALVHARKEEKEAVSARRALENELEAAQgNLSQTTQEQKQLSEKLKE-ESEQKEQLRRLKNEMENER 943
Cdd:PRK00409 574 --EAQQAIKEAKKEADEIIKELRQLQKGGYASV-KAHELIEARKRLNKANEKkEKKKKKQKEKQEELKVGDE 642
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
612-972 |
1.61e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.66 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 612 LLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKM 691
Cdd:COG4372 15 LFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 692 EREQHQTEIRDLQDQLSEMHDELDSAKrsedREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEV 771
Cdd:COG4372 95 ELAQAQEELESLQEEAEELQEELEELQ----KERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 772 SSHDQEMdklKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQ 851
Cdd:COG4372 171 QELQALS---EAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEED 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 852 IEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQ 931
Cdd:COG4372 248 KEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKK 327
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 2462546316 932 LRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQ 972
Cdd:COG4372 328 LELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVA 368
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
842-1238 |
1.84e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.10 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 842 ERRVaqLQRQIEDLKGDEAKAKETLKKyegeirqLEEALVHARKEEKEAVSARRALENELEAA-------QGNLSQTTQE 914
Cdd:PRK04863 280 ERRV--HLEEALELRRELYTSRRQLAA-------EQYRLVEMARELAELNEAESDLEQDYQAAsdhlnlvQTALRQQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 915 QK------QLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEAsrtsTLELQNQLDEYKE-KNRRELA 987
Cdd:PRK04863 351 ERyqadleELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQA----LDVQQTRAIQYQQaVQALERA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 988 EMQRQLKEKTLEAEKSRLTAMKMQ-----DEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYElEAKSHLKDDRSRL 1062
Cdd:PRK04863 427 KQLCGLPDLTADNAEDWLEEFQAKeqeatEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRS-EAWDVARELLRRL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1063 VKQ--MEDKVSQLEMELEEERNnsdllserisRSREQMEQVRneLLQERAARQDLECDKIS-LERQNKDLKSRIIHLEGS 1139
Cdd:PRK04863 506 REQrhLAEQLQQLRMRLSELEQ----------RLRQQQRAER--LLAEFCKRLGKNLDDEDeLEQLQEELEARLESLSES 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1140 YRSSKEGlVVQMEARIAELEDRLESEERDRANLQLSNRRLERkvkeLVMQVDDEHLSltdqKDQLSLRLKAMKRQVEEAE 1219
Cdd:PRK04863 574 VSEARER-RMALRQQLEQLQARIQRLAARAPAWLAAQDALAR----LREQSGEEFED----SQDVTEYMQQLLERERELT 644
|
410
....*....|....*....
gi 2462546316 1220 EEIDRLESSKKKLQRELEE 1238
Cdd:PRK04863 645 VERDELAARKQALDEEIER 663
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1071-1263 |
2.22e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1071 SQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDlecdkISLERQNKDLKSRIIHLEGSYRSSKEGLVvQ 1150
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGL-----VDLSEEAKLLLQQLSELESQLAEARAELA-E 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1151 MEARIAELEDRLESEERDRANLQLSNR---------RLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEE 1221
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPViqqlraqlaELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2462546316 1222 IDRLESSKKKLQRELEEQMdmnEHLQGQLNSMKKDLSRLKKL 1263
Cdd:COG3206 318 LEAELEALQAREASLQAQL---AQLEARLAELPELEAELRRL 356
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
947-1096 |
2.56e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.23 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 947 GKTIEK-LQKEMADIVEASRTSTlelqnqlDEYKEKNRRELAEMQRQLKEKTLEAEKsrltamkMQDEMRLMEEELRDyq 1025
Cdd:COG2433 375 GLSIEEaLEELIEKELPEEEPEA-------EREKEHEERELTEEEEEIRRLEEQVER-------LEAEVEELEAELEE-- 438
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462546316 1026 raqdealtkrqlLEQTLKDLEYEL-EAKS--HLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSRE 1096
Cdd:COG2433 439 ------------KDERIERLERELsEARSeeRREIRKDREISRLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
814-1031 |
2.70e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 45.07 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 814 EQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDlkgdeakAKETLKKYEGEIRQLEEALVHARKEEKEavsA 893
Cdd:PRK11637 53 QQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRE-------TQNTLNQLNKQIDELNASIAKLEQQQAA---Q 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 894 RRALENELEAA--QGnlsQTTQEQKQLSeklKEESEQKEQLRRLKNEMENERwhlGKTIEKLQKEMADiVEASRTSTLEL 971
Cdd:PRK11637 123 ERLLAAQLDAAfrQG---EHTGLQLILS---GEESQRGERILAYFGYLNQAR---QETIAELKQTREE-LAAQKAELEEK 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462546316 972 QNQLDE--YKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQ-DEMRLMEEELRD-YQRAQDEA 1031
Cdd:PRK11637 193 QSQQKTllYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQlSELRANESRLRDsIARAEREA 256
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
692-970 |
2.84e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 45.13 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 692 EREQHQTEIrdLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKREREL--------TAL 763
Cdd:pfam09731 125 EKEKALEEV--LKEAISKAESATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKAEALaeklkeviNLA 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 764 KGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVL--ASRSNTSEQDQAGTEMrVKLLQE-----------E 830
Cdd:pfam09731 203 KQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVdqYKELVASERIVFQQEL-VSIFPDiipvlkednllS 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 831 NEKLQGRSEELERRVAQLQRQIEDLKGDE-AKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEaaqgnls 909
Cdd:pfam09731 282 NDDLNSLIAHAHREIDQLSKKLAELKKREeKHIERALEKQKEELDKLAEELSARLEEVRAADEAQLRLEFERE------- 354
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462546316 910 qTTQEQKQLSEKLKEESEQKEQL--RRLKNEM-----ENERWHLGKTIEKLQKEmadivEASRTSTLE 970
Cdd:pfam09731 355 -REEIRESYEEKLRTELERQAEAheEHLKDVLveqeiELQREFLQDIKEKVEEE-----RAGRLLKLN 416
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
969-1186 |
3.16e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 44.36 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 969 LELQNQ-LDEYKEKNRRELaemqrQLKEKTLEAEKSRLTAMKMQDEmRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEY 1047
Cdd:pfam09787 2 LESAKQeLADYKQKAARIL-----QSKEKLIASLKEGSGVEGLDSS-TALTLELEELRQERDLLREEIQKLRGQIQQLRT 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1048 ELEaksHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQDLECDK-ISLERQN 1126
Cdd:pfam09787 76 ELQ---ELEAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEELRRSKATLQSRIKDReAEIEKLR 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1127 KDLKSRiiHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKEL 1186
Cdd:pfam09787 153 NQLTSK--SQSSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKEL 210
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
642-1035 |
3.43e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 45.20 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 642 EERERMRANLEELRSQHNEKVEENSTLQQRLEEsegELRKNLEELFQVKmerEQHQTEIRD----LQDQLSEMHDELDS- 716
Cdd:NF041483 728 QERERAREQSEELLASARKRVEEAQAEAQRLVE---EADRRATELVSAA---EQTAQQVRDsvagLQEQAEEEIAGLRSa 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 717 AKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEE-VSSHDQEMDKLKEQYDAELQALRES 795
Cdd:NF041483 802 AEHAAERTRTEAQEEADRVRSDAYAERERASEDANRLRREAQEETEAAKALAERtVSEAIAEAERLRSDASEYAQRVRTE 881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 796 VEEATKNVEVLASRSNTSEQDQAgTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEI-- 873
Cdd:NF041483 882 ASDTLASAEQDAARTRADAREDA-NRIRSDAAAQADRLIGEATSEAERLTAEARAEAERLRDEARAEAERVRADAAAQae 960
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 874 RQLEEALVHA---RKEEKEAV-SARRALENELEAAQGNLSQTTQEQKQLSEKLKEESE------QKEQLRRLKNEMENER 943
Cdd:NF041483 961 QLIAEATGEAerlRAEAAETVgSAQQHAERIRTEAERVKAEAAAEAERLRTEAREEADrtldeaRKDANKRRSEAAEQAD 1040
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 944 WHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRelaEMQRQLKEKTLEA----EKSRLTAMKM-------QD 1012
Cdd:NF041483 1041 TLITEAAAEADQLTAKAQEEALRTTTEAEAQADTMVGAARK---EAERIVAEATVEGnslvEKARTDADELlvgarrdAT 1117
|
410 420
....*....|....*....|...
gi 2462546316 1013 EMRLMEEELRDYQRAQDEALTKR 1035
Cdd:NF041483 1118 AIRERAEELRDRITGEIEELHER 1140
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
860-1019 |
3.60e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.82 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 860 AKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQlrrlknem 939
Cdd:PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ-------- 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 940 enerwhlgKTIEKLQKEMADIVEASRtstlelQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEE 1019
Cdd:PRK00409 577 --------QAIKEAKKEADEIIKELR------QLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDE 642
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1148-1262 |
3.64e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1148 VVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDehlsltDQKDQLSLR----LKAMKRQVEEAEEEID 1223
Cdd:COG1579 33 LAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKK------YEEQLGNVRnnkeYEALQKEIESLKRRIS 106
|
90 100 110
....*....|....*....|....*....|....*....
gi 2462546316 1224 RLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKK 1262
Cdd:COG1579 107 DLEDEILELMERIEELEEELAELEAELAELEAELEEKKA 145
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
610-799 |
4.34e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 610 KDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKvEENSTLQQRLEESEGELRKNLEElfqv 689
Cdd:COG4717 319 EELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQ-EIAALLAEAGVEDEEELRAALEQ---- 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 690 KMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREkgALIEELLQAKQDLQDLliakEEQEDLLRKRERELTALKGALKE 769
Cdd:COG4717 394 AEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEEL----EEELEELREELAELEAELEQLEE 467
|
170 180 190
....*....|....*....|....*....|
gi 2462546316 770 evsshDQEMDKLKEQYDAELQALRESVEEA 799
Cdd:COG4717 468 -----DGELAELLQELEELKAELRELAEEW 492
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
883-1263 |
4.46e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 4.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 883 ARKEEKEAVSARRAL---ENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKtIEKLQKEMAD 959
Cdd:PRK04863 281 RRVHLEEALELRRELytsRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEK-IERYQADLEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 960 IVEAsrtstLELQNQLDEykeknrrELAEMQRQLKEKTLEAEKSrltamkmQDEMRlmeEELRDYQRAQDEALTKRQLLE 1039
Cdd:PRK04863 360 LEER-----LEEQNEVVE-------EADEQQEENEARAEAAEEE-------VDELK---SQLADYQQALDVQQTRAIQYQ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1040 QTLKDLEyelEAKShLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRS---REQMEQVRnELLQeraarqdle 1116
Cdd:PRK04863 418 QAVQALE---RAKQ-LCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAqaaHSQFEQAY-QLVR--------- 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1117 cdKISLERQNKDLKSRIIHLEGSYRSSK--EGLVVQMEARIAELEDRLESEerdranlqlsnRRLERKVKELVMqvddeh 1194
Cdd:PRK04863 484 --KIAGEVSRSEAWDVARELLRRLREQRhlAEQLQQLRMRLSELEQRLRQQ-----------QRAERLLAEFCK------ 544
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462546316 1195 lsltdqkdqlslRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKKL 1263
Cdd:PRK04863 545 ------------RLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
858-1034 |
4.88e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 4.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 858 DEAKAK---------ETLKKYEGEIRQLEEALVHARKEEKEAVSARRAlenELEaaqgnlsqttqeqkqlseklKEESEQ 928
Cdd:COG0542 396 DEAAARvrmeidskpEELDELERRLEQLEIEKEALKKEQDEASFERLA---ELR--------------------DELAEL 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 929 KEQLRRLKNEMENERwhlgKTIEKLQKEMADIvEASRTSTLELQNQLDEYKEknrrELAEMQRQLKEKTLEAE----KSR 1004
Cdd:COG0542 453 EEELEALKARWEAEK----ELIEEIQELKEEL-EQRYGKIPELEKELAELEE----ELAELAPLLREEVTEEDiaevVSR 523
|
170 180 190
....*....|....*....|....*....|....*..
gi 2462546316 1005 LT---AMKM-QDEM-RL--MEEELRDYQRAQDEALTK 1034
Cdd:COG0542 524 WTgipVGKLlEGEReKLlnLEEELHERVIGQDEAVEA 560
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
608-1171 |
5.27e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 44.43 E-value: 5.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 608 EVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNikEERERMRANLEELRSQHNEKVEENSTLQQRLE-ESEGELRKNLEEl 686
Cdd:NF041483 95 ELRDARAQTQRILQEHAEHQARLQAELHTEAV--QRRQQLDQELAERRQTVESHVNENVAWAEQLRaRTESQARRLLDE- 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 687 fqVKMEREQHQTEIRDLQDQLS-EMHDELDSAKRSEDREKGALieeLLQAKQDLQDLLIAKEEQEDLLRKRERELTALKG 765
Cdd:NF041483 172 --SRAEAEQALAAARAEAERLAeEARQRLGSEAESARAEAEAI---LRRARKDAERLLNAASTQAQEATDHAEQLRSSTA 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 ALKEEVSSHDQEMDKLKEQYDAELQ-ALRESVEEATKNVE--------VLASRSNTSEQ-DQAGTEMRVKLLQEENEKLQ 835
Cdd:NF041483 247 AESDQARRQAAELSRAAEQRMQEAEeALREARAEAEKVVAeakeaaakQLASAESANEQrTRTAKEEIARLVGEATKEAE 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 836 GRSEELERRVAQLQRQIEDL------KGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSA--------RRALENEL 901
Cdd:NF041483 327 ALKAEAEQALADARAEAEKLvaeaaeKARTVAAEDTAAQLAKAARTAEEVLTKASEDAKATTRAaaeeaeriRREAEAEA 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 902 EAAQGNLSQTTQEQKQLSEKLKEE-----SEQKEQLRRLKNEMENERWHLGKTIEKLQKE-----MADIVEASRTSTLEL 971
Cdd:NF041483 407 DRLRGEAADQAEQLKGAAKDDTKEyraktVELQEEARRLRGEAEQLRAEAVAEGERIRGEarreaVQQIEEAARTAEELL 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 972 QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDyqRAQDEALTKRQLLEQTLKDLEYELE- 1050
Cdd:NF041483 487 TKAKADADELRSTATAESERVRTEAIERATTLRRQAEETLERTRAEAERLRA--EAEEQAEEVRAAAERAARELREETEr 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1051 ----AKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNsdllSERISR-SREQMEQVRNELLQERAARQDlecdkiSLERQ 1125
Cdd:NF041483 565 aiaaRQAEAAEELTRLHTEAEERLTAAEEALADARAE----AERIRReAAEETERLRTEAAERIRTLQA------QAEQE 634
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 2462546316 1126 NKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRAN 1171
Cdd:NF041483 635 AERLRTEAAADASAARAEGENVAVRLRSEAAAEAERLKSEAQESAD 680
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
734-1106 |
5.49e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.66 E-value: 5.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 734 QAKQDLQDLLIAKE-EQEDLLRkrereltALKGAL-----KEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLA 807
Cdd:PRK10929 27 QITQELEQAKAAKTpAQAEIVE-------ALQSALnwleeRKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 808 SRSNTSEQDQAGTEMRVKLLQEENE--KLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARK 885
Cdd:PRK10929 100 PNMSTDALEQEILQVSSQLLEKSRQaqQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQ 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 886 EEkeaVSARRALENELEAAQgnLSQTT-QEQKQL-SEKLKEESEQKE-QLRRLKNEMENERWH-----LGKTiEKLQKEM 957
Cdd:PRK10929 180 AE---SAALKALVDELELAQ--LSANNrQELARLrSELAKKRSQQLDaYLQALRNQLNSQRQReaeraLEST-ELLAEQS 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 958 ADIvEASRTSTLELQNQL-DEYKEKNRR--ELAEMQRQLKEKTLEAEKSrLTAMKMQ----DEMRLMEEELRDyQRAQDE 1030
Cdd:PRK10929 254 GDL-PKSIVAQFKINRELsQALNQQAQRmdLIASQQRQAASQTLQVRQA-LNTLREQsqwlGVSNALGEALRA-QVARLP 330
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 1031 ALTKRQLLEQTLKDLEYEleakshlkddrsRLvkQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELL 1106
Cdd:PRK10929 331 EMPKPQQLDTEMAQLRVQ------------RL--RYEDLLNKQPQLRQIRQADGQPLTAEQNRILDAQLRTQRELL 392
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
619-732 |
5.65e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.80 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 619 LTIEVAELQRQLQLEVKNQQNIKEERERMRANL---EELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKmEREQ 695
Cdd:PRK09039 58 LNSQIAELADLLSLERQGNQDLQDSVANLRASLsaaEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVS-ARAL 136
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2462546316 696 HQTE-----IRDLQDQLSEMHDELDSAKrSEDREKGALIEEL 732
Cdd:PRK09039 137 AQVEllnqqIAALRRQLAALEAALDASE-KRDRESQAKIADL 177
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
561-783 |
5.66e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 5.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 561 NYLKEGSTDNDDATKRKVNLVFEKIQTLKSRAAGSAQGNNQACNSTSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQ--- 637
Cdd:PHA02562 202 KNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIkmy 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 638 ----------QNIKEERERMranlEELRsqhnekvEENSTLQQRLEesegELRKNLEELFQVKMEREQHQTEIRDLQDQL 707
Cdd:PHA02562 282 ekggvcptctQQISEGPDRI----TKIK-------DKLKELQHSLE----KLDTAIDELEEIMDEFNEQSKKLLELKNKI 346
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 708 SEMHDELDSAKRSEDREKGALIEellqakqdLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKE 783
Cdd:PHA02562 347 STNKQSLITLVDKAKKVKAAIEE--------LQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD 414
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
1022-1174 |
5.90e-04 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 43.57 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1022 RDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEmELEEERNNSDllsERISRSREQMEQV 1101
Cdd:pfam00529 54 TDYQAALDSAEAQLAKAQAQVARLQAELDRLQALESELAISRQDYDGATAQLR-AAQAAVKAAQ---AQLAQAQIDLARR 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1102 R----------NELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRAN 1171
Cdd:pfam00529 130 RvlapiggisrESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLER 209
|
...
gi 2462546316 1172 LQL 1174
Cdd:pfam00529 210 TEI 212
|
|
| HAMP |
COG2770 |
HAMP domain [Signal transduction mechanisms]; |
699-1051 |
6.48e-04 |
|
HAMP domain [Signal transduction mechanisms];
Pssm-ID: 442051 [Multi-domain] Cd Length: 631 Bit Score: 43.95 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 699 EIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEM 778
Cdd:COG2770 266 EIGELARAFNRMADSLRESIEEAEEEEELAEAELARLLEALLELLLALLLLLLALLLLAAAALLLELLLLLLLALLLLLL 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 779 DKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGD 858
Cdd:COG2770 346 LAADLLLALALAALLLLLALELLLEAELLVLLALEALALEAELAAVLALLAALAAALLLLELALEELVLALLALALLALA 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 859 EAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNE 938
Cdd:COG2770 426 AAAAAAEAAAAALELAAAAIAAAAAAEAEGGLAELEAEELVAAAEALLLLAALLLLAALGALELLLLEEEEEAGAAAEEL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 939 MENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLME 1018
Cdd:COG2770 506 AEELLLLEGLLLLLLLEAEALEVAEELLELEEAALLLAAAAELAALLALLLALAAVEAAALLLAALLLAAVAALLELAAL 585
|
330 340 350
....*....|....*....|....*....|...
gi 2462546316 1019 EELRDYQRAQDEALTKRQLLEQTLKDLEYELEA 1051
Cdd:COG2770 586 LLLLLAAAEALAALELELAAAAEAALAEAELLE 618
|
|
| CCDC144C |
pfam14915 |
CCDC144C protein coiled-coil region; This family includes the human protein CCDC144C and the ... |
701-1002 |
6.55e-04 |
|
CCDC144C protein coiled-coil region; This family includes the human protein CCDC144C and the ankyrin repeat domain-containing protein 26-like 1 found in eukaryotes. Its function remains unknown, however, it is known to contain a coiled-coil domain which corresponds to this region. The ankyrin repeat which features in this protein is a common amino acid motif.
Pssm-ID: 464371 [Multi-domain] Cd Length: 304 Bit Score: 43.44 E-value: 6.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 701 RDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKR----ERELTALKGALKEEVSSHDQ 776
Cdd:pfam14915 2 CMLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKTLKLNEETLTKTvfqyNGQLNVLKAENTMLNSKLEN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 777 EMDKlKEQYDAELQALRESVEEATKNVEvlasRSNTSEQDQAGTemrvklLQEENEKLQGRSEELERRVAQLQRQIEDLK 856
Cdd:pfam14915 82 EKQN-KERLETEVESYRSRLAAAIQDHE----QSQTSKRDLELA------FQRERDEWLRLQDKMNFDVSNLRDENEILS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 857 GDEAKAKETLKKYEGEIRQLEEALV-------HARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQK 929
Cdd:pfam14915 151 QQLSKAESKANSLENELHRTRDALRektllleSVQRDLSQAQCQKKELEHMYQNEQDKVNKYIGKQESLEERLAQLQSEN 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462546316 930 EQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTlELQNQLDEykEKNrRELAEMQRQLKEKTLEAEK 1002
Cdd:pfam14915 231 MLLRQQLEDAQNKADAKEKTVIDIQDQFQDIVKKLQAES-EKQVLLLE--ERN-KELINECNHLKERLYQYEK 299
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
870-1084 |
7.16e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 7.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 870 EGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEeseQKEQLRRLKNEMENERWHLGKT 949
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDK---LQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 950 IEKLQKEMAD------IVEASRTSTL----ELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEE 1019
Cdd:COG3883 92 ARALYRSGGSvsyldvLLGSESFSDFldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462546316 1020 ELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNS 1084
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
567-870 |
7.21e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 43.36 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 567 STDNDDATKRKVNLVFEKIQTLKSRaagSAQGNNQACNSTSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERER 646
Cdd:COG1340 6 LSSSLEELEEKIEELREEIEELKEK---RDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 647 MRANLEELRSQHNEKVEENSTLQQRlEESEGELRKNLEELfqvkmeREQHQTEI------RDLQDQLSEMHDELDSAKrs 720
Cdd:COG1340 83 LNEKLNELREELDELRKELAELNKA-GGSIDKLRKEIERL------EWRQQTEVlspeeeKELVEKIKELEKELEKAK-- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 721 edrekgalieELLQAKQDLQDLLiakeEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDaelqALRESVEEAT 800
Cdd:COG1340 154 ----------KALEKNEKLKELR----AELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEAD----ELRKEADELH 215
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 801 KNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQlqrqiEDLKGDEAKAKETLKKYE 870
Cdd:COG1340 216 KEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEK-----EELEEKAEEIFEKLKKGE 280
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
605-922 |
8.60e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 8.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 605 STSEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLE 684
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 685 ELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALK 764
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 765 GALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERR 844
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462546316 845 VAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKL 922
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLL 346
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
874-1227 |
9.23e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 9.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 874 RQLEEALVHARkeekEAVSARRALeneleaaQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTI--- 950
Cdd:COG3096 275 RHANERRELSE----RALELRREL-------FGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQtal 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 951 ---EKLQKEMADIVEAsrTSTLELQNQLdeykeknrRELAEMQRQLKEKTLEAEKSRLTAMKMQdemrlmeeeLRDYQRA 1027
Cdd:COG3096 344 rqqEKIERYQEDLEEL--TERLEEQEEV--------VEEAAEQLAEAEARLEAAEEEVDSLKSQ---------LADYQQA 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1028 QDEALTKRQLLEQTLKDLEyELEAKSHLKD-------DRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQ 1100
Cdd:COG3096 405 LDVQQTRAIQYQQAVQALE-KARALCGLPDltpenaeDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1101 VRNELLQERA---ARQDLecdkisleRQNKDLKSRIihlegsyrsskeGLVVQMEARIAELEDRLESEERDRANLQLSNR 1177
Cdd:COG3096 484 IAGEVERSQAwqtARELL--------RRYRSQQALA------------QRLQQLRAQLAELEQRLRQQQNAERLLEEFCQ 543
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 1178 RLERKV------KELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLES 1227
Cdd:COG3096 544 RIGQQLdaaeelEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAA 599
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
608-807 |
9.70e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 9.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 608 EVKDLLEQKSKltiEVAELQRQLQLEVKnqqnikEERERMRANLEElrsQHNEKVEENSTLQQRLEESEGELRKNLEELF 687
Cdd:PRK12704 39 EAKRILEEAKK---EAEAIKKEALLEAK------EEIHKLRNEFEK---ELRERRNELQKLEKRLLQKEENLDRKLELLE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 688 QVKMEREQHQTEIRDLQDQLSEMhdeldsakrsedrekgalieellqakqdlqdlliaKEEQEDLLRKRERELTALKGAL 767
Cdd:PRK12704 107 KREEELEKKEKELEQKQQELEKK-----------------------------------EEELEELIEEQLQELERISGLT 151
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2462546316 768 KEEVSShdQEMDKLKEQYDAELQAL-RESVEEATKNVEVLA 807
Cdd:PRK12704 152 AEEAKE--ILLEKVEEEARHEAAVLiKEIEEEAKEEADKKA 190
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
592-993 |
1.03e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 592 AAGSAQGNNQACNSTSEVKDLLEQKSKltievaelQRQLQLEVKNQQNIKEERERMRANLEELRsqhnekvEENSTLQQR 671
Cdd:PRK11281 24 SAFARAASNGDLPTEADVQAQLDALNK--------QKLLEAEDKLVQQDLEQTLALLDKIDRQK-------EETEQLKQQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 672 LEESEGELRKNLEELFQVK-----MEREQHQT-EIRDLQDQLSEMHDELDSAKrsedrekgaliEELLQAKQDLQDLLIA 745
Cdd:PRK11281 89 LAQAPAKLRQAQAELEALKddndeETRETLSTlSLRQLESRLAQTLDQLQNAQ-----------NDLAEYNSQLVSLQTQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 746 KEEQEDLL---RKRERELTALKGALK--EEVSSHDQemdklKEQYDAELQAL-------RESVEEATKNVEVLASRSNTS 813
Cdd:PRK11281 158 PERAQAALyanSQRLQQIRNLLKGGKvgGKALRPSQ-----RVLLQAEQALLnaqndlqRKSLEGNTQLQDLLQKQRDYL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 814 EQDQAGTEMRVKLLQEE-NEKlqgRSEELERRVAQLQRQiedlkgDEAKAKET--LKKYEGEI-RQLEEALVHARKEEKE 889
Cdd:PRK11281 233 TARIQRLEHQLQLLQEAiNSK---RLTLSEKTVQEAQSQ------DEAARIQAnpLVAQELEInLQLSQRLLKATEKLNT 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 890 --------------AVSARRALENELEAAQGN--LSQTTQEQKQLSEKLKEESEQKEQLR--RLK----NEMENERWHLG 947
Cdd:PRK11281 304 ltqqnlrvknwldrLTQSERNIKEQISVLKGSllLSRILYQQQQALPSADLIEGLADRIAdlRLEqfeiNQQRDALFQPD 383
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 2462546316 948 KTIEKLQKEMADIVEAsrtstlELQNQLDEYKEKNRRELAEMQRQL 993
Cdd:PRK11281 384 AYIDKLEAGHKSEVTD------EVRDALLQLLDERRELLDQLNKQL 423
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
768-939 |
1.19e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 43.11 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 768 KEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTseqdqagtemrvklLQEENEKLQGRSEELERRvaq 847
Cdd:pfam10168 556 REEIQKRVKLLKLQKEQQLQELQSLEEERKSLSERAEKLAEKYEE--------------IKDKQEKLMRRCKKVLQR--- 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 848 LQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEavsARRALENELEAAQGNLSQTTQEQ-KQLSEKLKEES 926
Cdd:pfam10168 619 LNSQLPVLSDAEREMKKELETINEQLKHLANAIKQAKKKMNY---QRYQIAKSQSIRKKSSLSLSEKQrKTIKEILKQLG 695
|
170
....*....|....*..
gi 2462546316 927 ----EQKEQLRRLKNEM 939
Cdd:pfam10168 696 seidELIKQVKDINKHV 712
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
826-1100 |
1.21e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 42.60 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 826 LLQEENEKLQGRSEELERRVAQLQRQIEDLKGDeakAKETLKKYEGEIRQ---LEEALVHARKEEKEAVSARRALENELE 902
Cdd:pfam00038 51 LYEKEIEDLRRQLDTLTVERARLQLELDNLRLA---AEDFRQKYEDELNLrtsAENDLVGLRKDLDEATLARVDLEAKIE 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 903 AaqgnlsqttqeqkqlsekLKEEseqkeqLRRLKNEMENERWHLGKTI--EKLQKEMADIVEASRTSTL-ELQNQLDEYK 979
Cdd:pfam00038 128 S------------------LKEE------LAFLKKNHEEEVRELQAQVsdTQVNVEMDAARKLDLTSALaEIRAQYEEIA 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 980 EKNRRELAEM-QRQLKEKTLEAEKSrltamkmQDEMRLMEEELRDYQRaqdealtkrqlleqTLKDLEYELEAkshLKDD 1058
Cdd:pfam00038 184 AKNREEAEEWyQSKLEELQQAAARN-------GDALRSAKEEITELRR--------------TIQSLEIELQS---LKKQ 239
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2462546316 1059 RSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQ 1100
Cdd:pfam00038 240 KASLERQLAETEERYELQLADYQELISELEAELQETRQEMAR 281
|
|
| BicD |
pfam09730 |
Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled ... |
635-1021 |
1.22e-03 |
|
Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells.
Pssm-ID: 462863 [Multi-domain] Cd Length: 717 Bit Score: 43.31 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 635 KNQQNIKEERERMRANLEELRSQHNEKVEENStlqqRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDEL 714
Cdd:pfam09730 69 EECECVELQRGRMRDEIKEYKVREARLLQDYS----ELEEENISLQKQVSVLKQNQVEFEGLKHEITRKEEETELLNSQL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 715 DSAKRSEDREKGALIEELLQAKQDlqdlliakEEQEDLLRKRERELTALKGALKeeVSSHDQEMDKLKEQYDAELQALRE 794
Cdd:pfam09730 145 EEAIRLREIAERQLDEALETLKTE--------REQKNSLRKELSHYMTLNDFDY--VSHLSISLDGLKFSEDEGAGTEPN 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 795 SVEEATKNVEVLASRSNTSEQDQAGTEMRVK------------LLQE----ENEKLQGRSEELERRVAQLQRQIEDLKGD 858
Cdd:pfam09730 215 NDGEAMDGGENGGGGLKNSGLDNRTSTPRKSevfppapslvsdLLSElnisEIQKLKQQLIQVEREKVSLLSTLQESQKQ 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 859 EAKAKETLKKYEGEIRQLEEALVHARKeekeaVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQK-----EQLR 933
Cdd:pfam09730 295 LEQAKGALSEQQEKVNRLTENLEAMRG-----LQASKERQDALDSEKDRDSHEDGDYYEVDINGPEILECKyrvavEEAG 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 934 RLKNEMENERWHLgKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDE 1013
Cdd:pfam09730 370 ELREELKALKARY-NTLEERYKEEKTRWEAEAQDLAEKIRQLEKASHQDQERIAHLEKELGKTRKVAGESEGSLSVAQDE 448
|
....*...
gi 2462546316 1014 MRLMEEEL 1021
Cdd:pfam09730 449 LVTFSEEL 456
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
635-996 |
1.35e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 635 KNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDEL 714
Cdd:COG4372 10 KARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 715 DSAKRSEDREKgALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRE 794
Cdd:COG4372 90 QAAQAELAQAQ-EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 795 SVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIR 874
Cdd:COG4372 169 LEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDK 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 875 QLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQ 954
Cdd:COG4372 249 EELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKL 328
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2462546316 955 KEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEK 996
Cdd:COG4372 329 ELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
608-941 |
1.39e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 42.75 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 608 EVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSqhneKVEENSTLQQRLEESEGELRKNLEELF 687
Cdd:pfam05622 1 DLSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLES----GDDSGTPGGKKYLLLQKQLEQLQEENF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 688 QV-------KMEREQHQTEIRDLQDQLSEMH----------DELDSAKRSEDREKG--ALIEELLQAKQDLQDL------ 742
Cdd:pfam05622 77 RLetarddyRIKCEELEKEVLELQHRNEELTslaeeaqalkDEMDILRESSDKVKKleATVETYKKKLEDLGDLrrqvkl 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 743 --------LIAKEEQEDLLRKR----------ERELTALKGALKEEVSSHDQ---EMDKLKEQYDA----------ELQA 791
Cdd:pfam05622 157 leernaeyMQRTLQLEEELKKAnalrgqletyKRQVQELHGKLSEESKKADKlefEYKKLEEKLEAlqkekerliiERDT 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 792 LRESVEE--------ATKNVEVLASRSNTSEQDQAGTEM-------RVKLLQEENEKLQGRSEELER-RVAQLQRQIEDl 855
Cdd:pfam05622 237 LRETNEElrcaqlqqAELSQADALLSPSSDPGDNLAAEImpaeireKLIRLQHENKMLRLGQEGSYReRLTELQQLLED- 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 856 kgdeakAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEaaqgNLSQTTQEQKQLSEKLKEESEQKEQLRRL 935
Cdd:pfam05622 316 ------ANRRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAE----DSSLLKQKLEEHLEKLHEAQSELQKKKEQ 385
|
....*.
gi 2462546316 936 KNEMEN 941
Cdd:pfam05622 386 IEELEP 391
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
861-1058 |
1.40e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 42.36 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 861 KAKETLKKYEGEIRQLEEALVHARKEEKEA---VSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKN 937
Cdd:cd22656 84 NAGGTIDSYYAEILELIDDLADATDDEELEeakKTIKALLDDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEK 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 938 EMEnerwhlgktiEKLQKEMADIVEASRTstlELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLM 1017
Cdd:cd22656 164 ALK----------DLLTDEGGAIARKEIK---DLQKELEKLNEEYAAKLKAKIDELKALIADDEAKLAAALRLIADLTAA 230
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2462546316 1018 EEELRDYQRAQDEALTKRQLLEQTLKDLEYELEA-KSHLKDD 1058
Cdd:cd22656 231 DTDLDNLLALIGPAIPALEKLQGAWQAIATDLDSlKDLLEDD 272
|
|
| MutS2 |
COG1193 |
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair]; |
1025-1224 |
1.40e-03 |
|
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
Pssm-ID: 440806 [Multi-domain] Cd Length: 784 Bit Score: 43.21 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1025 QRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSER--------ISRSRE 1096
Cdd:COG1193 503 ERARELLGEESIDVEKLIEELERERRELEEEREEAERLREELEKLREELEEKLEELEEEKEEILEKareeaeeiLREARK 582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1097 QMEQVRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEG--LVVQMEARIAELEDR---LESEERDRAN 1171
Cdd:COG1193 583 EAEELIRELREAQAEEEELKEARKKLEELKQELEEKLEKPKKKAKPAKPPeeLKVGDRVRVLSLGQKgevLEIPKGGEAE 662
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462546316 1172 LQLSNRRLERKVKELvmQVDDEHLSLTDQKDQLSLRLKAMKRQ------------VEEAEEEIDR 1224
Cdd:COG1193 663 VQVGILKMTVKLSDL--EKVEKKKPKKPKKRPAGVSVSVSKAStvspeldlrgmrVEEALPELDK 725
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
688-1002 |
1.45e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 688 QVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGAL 767
Cdd:COG4372 3 RLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 768 KE------EVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEEL 841
Cdd:COG4372 83 EElneqlqAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 842 ERRVAQLQRQIEDLkgDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEK 921
Cdd:COG4372 163 QEELAALEQELQAL--SEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 922 LKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAE 1001
Cdd:COG4372 241 ALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAA 320
|
.
gi 2462546316 1002 K 1002
Cdd:COG4372 321 L 321
|
|
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
612-935 |
1.53e-03 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 42.74 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 612 LLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTL-------QQRLEESEGELRKNLE 684
Cdd:pfam15070 59 LAELKNQAAVPPAEEEQPPAGPSEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLsrlnqeqEQRLLELERAAERWGE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 685 ELFQVKMEREQHQ----------TEIRDLQDQLSEMHD----------ELDSAKRSEDREKGALIEELLQAKQDLQDLli 744
Cdd:pfam15070 139 QAEDRKQILEDMQsdratisralSQNRELKEQLAELQNgfvkltnenmELTSALQSEQHVKKELAKKLGQLQEELGEL-- 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 745 akEEQEDLlrkRERELTALKgALKEEVSSHDQemdklkeQYDAELQALRESVEEATKNVEV---LASRSNTSE-QDQAGT 820
Cdd:pfam15070 217 --KETLEL---KSQEAQSLQ-EQRDQYLAHLQ-------QYVAAYQQLASEKEELHKQYLLqtqLMDRLQHEEvQGKVAA 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 821 EMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAkaketlkkyegEIRQLEEALVHARKEEKEAVSARRALENE 900
Cdd:pfam15070 284 EMARQELQETQERLEALTQQNQQLQAQLSLLANPGEGDGL-----------ESEEEEEEAPRPSLSIPEDFESREAMVAF 352
|
330 340 350
....*....|....*....|....*....|....*
gi 2462546316 901 LEAAqgnLSQTTQEQKQLSEKLKEESEQKEQLRRL 935
Cdd:pfam15070 353 FNSA---LAQAEEERAELRRQLKEQKRRCRRLAQQ 384
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
694-856 |
1.95e-03 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 41.28 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 694 EQHQTEIRDLQDQLSEMHDELDSAKRSEDREKgalIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSS 773
Cdd:cd00176 3 QQFLRDADELEAWLSEKEELLSSTDYGDDLES---VEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 774 H----DQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQ 849
Cdd:cd00176 80 RleelNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHE 159
|
....*..
gi 2462546316 850 RQIEDLK 856
Cdd:cd00176 160 PRLKSLN 166
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
610-931 |
1.98e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 42.69 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 610 KDLLEQKSKltieVAELQRQLQLEVKNQQNIKEERERmranleelrsqhNEKVEENSTLQQRLEESEGELRKNLEELFQV 689
Cdd:NF033838 132 KDTLEPGKK----VAEATKKVEEAEKKAKDQKEEDRR------------NYPTNTYKTLELEIAESDVEVKKAELELVKE 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 690 KMEREQHQTEIRDLQDQLSEMHDELDSAKR-SEDREKgalieellqAKQDLQDLLIAKEEQEDLLRKRERELTALKGALK 768
Cdd:NF033838 196 EAKEPRDEEKIKQAKAKVESKKAEATRLEKiKTDREK---------AEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 769 EEVSSHDQEMDKlKEQyDAELQAlrESVEEatknvEVLASRSNTSEQDQAGTEMRVkllQEENEKLQGRSEELERRVA-- 846
Cdd:NF033838 267 RGVLGEPATPDK-KEN-DAKSSD--SSVGE-----ETLPSPSLKPEKKVAEAEKKV---EEAKKKAKDQKEEDRRNYPtn 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 847 ---QLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALvharKEEKEAVSARRALENELEAAQGNLSQTTQEQKQ---LSE 920
Cdd:NF033838 335 tykTLELEIAESDVKVKEAELELVKEEAKEPRNEEKI----KQAKAKVESKKAEATRLEKIKTDRKKAEEEAKRkaaEED 410
|
330
....*....|.
gi 2462546316 921 KLKEESEQKEQ 931
Cdd:NF033838 411 KVKEKPAEQPQ 421
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
1121-1262 |
3.03e-03 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 39.92 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1121 SLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQ 1200
Cdd:pfam08614 18 LLEAENAKLQSEPESVLPSTSSSKLSKASPQSASIQSLEQLLAQLREELAELYRSRGELAQRLVDLNEELQELEKKLRED 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462546316 1201 kdqlSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKK 1262
Cdd:pfam08614 98 ----ERRLAALEAERAQLEEKLKDREEELREKRKLNQDLQDELVALQLQLNMAEEKLRKLEK 155
|
|
| Leu_zip |
pfam15294 |
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 ... |
822-924 |
3.63e-03 |
|
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 (LZTFL1) and Leucine zipper protein 2 (LUZP2).
Pssm-ID: 464620 [Multi-domain] Cd Length: 276 Bit Score: 40.84 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 822 MRVKLLQEENEKLQGRSEELERRV-------AQLQRQIEDLKgDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSAR 894
Cdd:pfam15294 133 MEIERLKEENEKLKERLKTLESQAtqaldekSKLEKALKDLQ-KEQGAKKDVKSNLKEISDLEEKMAALKSDLEKTLNAS 211
|
90 100 110
....*....|....*....|....*....|....
gi 2462546316 895 RALENELEaaqGNLSQTTQE----QKQLSEKLKE 924
Cdd:pfam15294 212 TALQKSLE---EDLASTKHEllkvQEQLEMAEKE 242
|
|
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
823-1025 |
3.83e-03 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 40.78 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 823 RVKLLQEENEKLQGRSEELERRVAQLQRQIedlkgdeAKAKETLKKYEGEirqleealvhARKEEKEAVSARRALENELE 902
Cdd:pfam04849 95 QNSVLTERNEALEEQLGSAREEILQLRHEL-------SKKDDLLQIYSND----------AEESETESSCSTPLRRNESF 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 903 AAQGNLSQTTQEQKQLSEkLKEESEQ-KEQLRRLKNEMENerwhlgkTIEKLQKEMADIVE---ASRTSTLELQNQLDEY 978
Cdd:pfam04849 158 SSLHGCVQLDALQEKLRG-LEEENLKlRSEASHLKTETDT-------YEEKEQQLMSDCVEqlsEANQQMAELSEELARK 229
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462546316 979 KEKNRR----------ELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQ 1025
Cdd:pfam04849 230 MEENLRqqeeitsllaQIVDLQHKCKELGIENEELQQHLQASKEAQRQLTSELQELQ 286
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
672-956 |
3.90e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 40.95 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 672 LEESEGELRKNLEELFQVKM----------EREQHQTEIRDLQDQLSEMHDELDSAKRsedrEKGALIEELLQAKQDLQD 741
Cdd:pfam15905 58 SLELKKKSQKNLKESKDQKElekeiralvqERGEQDKRLQALEEELEKVEAKLNAAVR----EKTSLSASVASLEKQLLE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 742 LLIAKE-----EQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQD 816
Cdd:pfam15905 134 LTRVNEllkakFSEDGTQKKMSSLSMELMKLRNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 817 QAGTEMRVKLLQEENEKLQGRSEELErrvaqlqrqiedlkgdeakaketlkKYEGEIRQLEEALVHARKEEKEAVSARRA 896
Cdd:pfam15905 214 KIEEKSETEKLLEYITELSCVSEQVE-------------------------KYKLDIAQLEELLKEKNDEIESLKQSLEE 268
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462546316 897 LENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKT-IEKLQKE 956
Cdd:pfam15905 269 KEQELSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLTLEEQeHQKLQQK 329
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
915-1238 |
4.24e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 41.06 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 915 QKQLSEKLKEESEQKEQLRRLKNEMENERwhlGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMqrqLK 994
Cdd:pfam13868 25 DAQIAEKKRIKAEEKEEERRLDEMMEEER---ERALEEEEEKEEERKEERKRYRQELEEQIEEREQKRQEEYEEK---LQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 995 EKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKShLKDDRSRLVKQMEDKVSQLE 1074
Cdd:pfam13868 99 EREQMDEIVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEDERI-LEYLKEKAEREEEREAEREE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1075 MELEEERNNSDLLS--ERISRSREQMEQVRNELLQERAARQDlecdkislERQNKDLKSRIIHLEGSYRSSKEGLVVQME 1152
Cdd:pfam13868 178 IEEEKEREIARLRAqqEKAQDEKAERDELRAKLYQEEQERKE--------RQKEREEAEKKARQRQELQQAREEQIELKE 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1153 ARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLslTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKL 1232
Cdd:pfam13868 250 RRLAEEAEREEEEFERMLRKQAEDEEIEQEEAEKRRMKRLEHR--RELEKQIEEREEQRAAEREEELEEGERLREEEAER 327
|
....*.
gi 2462546316 1233 QRELEE 1238
Cdd:pfam13868 328 RERIEE 333
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1076-1189 |
4.48e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1076 ELEEERNNSDLLSERISRSREQMEQvRNELLQERAARqdLECDKISLERQNKDLKSRIIHLEGSYRSSKEGL-------- 1147
Cdd:COG2433 389 ELPEEEPEAEREKEHEERELTEEEE-EIRRLEEQVER--LEAEVEELEAELEEKDERIERLERELSEARSEErreirkdr 465
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2462546316 1148 -VVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQ 1189
Cdd:COG2433 466 eISRLDREIERLERELEEERERIEELKRKLERLKELWKLEHSG 508
|
|
| Tektin |
pfam03148 |
Tektin family; Tektins are cytoskeletal proteins. They have been demonstrated in such cellular ... |
903-1237 |
4.71e-03 |
|
Tektin family; Tektins are cytoskeletal proteins. They have been demonstrated in such cellular sites as centrioles, basal bodies, and along ciliary and flagellar doublet microtubules. Tektins form unique protofilaments, organized as longitudinal polymers of tektin heterodimers with axial periodicity matching tubulin. Tektin polypeptides consist of several alpha-helical regions that are predicted to form coiled coils. Indeed, tektins share considerable structural similarities with intermediate filament proteins. Possible functional roles for tektins are: stabilization of tubulin protofilaments; attachment of A and B-tubules in ciliary/flagellar microtubule doublets and C-tubules in centrioles; binding of axonemal components.
Pssm-ID: 460827 [Multi-domain] Cd Length: 383 Bit Score: 40.99 E-value: 4.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 903 AAQGNLSQTTQEQKQLSEKLKEESeqkeqlRRLKNEMENE-RW-------HLGKTI-------EKLQKEMADIVEASrts 967
Cdd:pfam03148 3 ANNQELYREAEAQRNDAERLRQES------RRLRNETDAKtKWdqydsnrRLGERIqditfwkSELEKELEELDEEI--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 968 tlelqNQLDEYKEKNRRELAEMQRQLK--EKTLEAEKSRLTAMKMQD--------EMRLMEEELRDYQRAQDEALTKRQL 1037
Cdd:pfam03148 74 -----ELLLEEKRRLEKALEALEEPLHiaQECLTLREKRQGIDLVHDevekellkEVELIEGIQELLQRTLEQAWEQLRL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1038 LEQTLKDLEYELEAKSH-------------------LKDDRSRLVKQM------EDKVSQLEMELEEERNNSDLLSERIS 1092
Cdd:pfam03148 149 LRAARHKLEKDLSDKKEaleidekclslnntspnisYKPGPTRIPPNSstpeewEKFTQDNIERAEKERAASAQLRELID 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1093 RSREQmeqVRNELLQERaarqdlecdkislERQNKDLKSRIIHLEGSYRSSKEGL------VVQMEARIAELEDRLESEE 1166
Cdd:pfam03148 229 SILEQ---TANDLRAQA-------------DAVNFALRKRIEETEDAKNKLEWQLkktlqeIAELEKNIEALEKAIRDKE 292
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462546316 1167 rdrANLQLSNRRLE----RKVKELVMqvDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELE 1237
Cdd:pfam03148 293 ---APLKLAQTRLEnrtyRPNVELCR--DEAQYGLVDEVKELEETIEALKQKLAEAEASLQALERTRLRLEEDIA 362
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
656-1112 |
4.79e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 41.32 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 656 SQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKM-----------EREQHQTE-IRDLQDQLSEMHDELDSAKRSEDR 723
Cdd:PRK10246 250 TRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLaqparqlrphwERIQEQSAaLAHTRQQIEEVNTRLQSTMALRAR 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 724 EKGALIEELLQAKQDLQDLLIAKEEQeDLLRKRERELTALKGALKEEVSSHDQeMDKLKEQYDAELQALrESVEEATKNV 803
Cdd:PRK10246 330 IRHHAAKQSAELQAQQQSLNTWLAEH-DRFRQWNNELAGWRAQFSQQTSDREQ-LRQWQQQLTHAEQKL-NALPAITLTL 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 804 ---EVLASRSNTSEQdqagTEMRVKLLQeenekLQGRSEELERRVAQLQRQIEDLKGDEAKAKETL--KKYEGEIRQLEE 878
Cdd:PRK10246 407 tadEVAAALAQHAEQ----RPLRQRLVA-----LHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALneMRQRYKEKTQQL 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 879 ALVHARKEEKEAVSARRALENELEAAQ-----GNLSQTTQEQKQLSEKlkeeseQKEQLRRlkNEMENErwhlgktiekl 953
Cdd:PRK10246 478 ADVKTICEQEARIKDLEAQRAQLQAGQpcplcGSTSHPAVEAYQALEP------GVNQSRL--DALEKE----------- 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 954 qkemadiVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLK-EKTLEAEKSRLTA-----MKMQDEMRLMEEELRDYQRa 1027
Cdd:PRK10246 539 -------VKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQeEQALTQQWQAVCAslnitLQPQDDIQPWLDAQEEHER- 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1028 QDEALTKRQLLEQTLKDLEyELEAKSHLKDDRSRLvkQMEDKVSQLEMELEEERNNSDLLSERISRSRE-QMEQVRNELL 1106
Cdd:PRK10246 611 QLRLLSQRHELQGQIAAHN-QQIIQYQQQIEQRQQ--QLLTALAGYALTLPQEDEEASWLATRQQEAQSwQQRQNELTAL 687
|
....*.
gi 2462546316 1107 QERAAR 1112
Cdd:PRK10246 688 QNRIQQ 693
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
846-928 |
4.90e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.48 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 846 AQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQlseKLKEE 925
Cdd:PRK11448 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQ---KRKEI 221
|
...
gi 2462546316 926 SEQ 928
Cdd:PRK11448 222 TDQ 224
|
|
| ATG17_like |
pfam04108 |
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ... |
607-913 |
5.04e-03 |
|
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs.
Pssm-ID: 427715 [Multi-domain] Cd Length: 360 Bit Score: 40.83 E-value: 5.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 607 SEVKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEErerMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEEL 686
Cdd:pfam04108 17 TDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREG---LEKVLNELKKDFKQLLKDLDAALERLEETLDKLRNTPVEP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 687 FQVKMEREQH-------QTEIRDLQDQLSEMHDELDSAKRSEDRekgaLIEELLQAKQDLQDLLIAKEEQedllrkreRE 759
Cdd:pfam04108 94 ALPPGEEKQKtlldfidEDSVEILRDALKELIDELQAAQESLDS----DLKRFDDDLRDLQKELESLSSP--------SE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 760 LTALKGALKEEVSSHDQEM----DKLKEQYDAELQALRESVEEATKNVEVLasrsntsEQDQAGTEMRVKLLQEeneklq 835
Cdd:pfam04108 162 SISLIPTLLKELESLEEEMasllESLTNHYDQCVTAVKLTEGGRAEMLEVL-------ENDARELDDVVPELQD------ 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462546316 836 gRSEELERRVAQLQRQIEDLKGDEAKAKETLKKyegeIRQLEEALVHARKEEKEavsARRALENELEAAQGNLSQTTQ 913
Cdd:pfam04108 229 -RLDEMENNYERLQKLLEQKNSLIDELLSALQL----IAEIQSRLPEYLAALKE---FEERWEEEKETIEDYLSELED 298
|
|
| DUF4200 |
pfam13863 |
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ... |
839-924 |
5.17e-03 |
|
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.
Pssm-ID: 464003 [Multi-domain] Cd Length: 119 Bit Score: 38.32 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 839 EELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQL 918
Cdd:pfam13863 20 EEIERLEELLKQREEELEKKEQELKEDLIKFDKFLKENDAKRRRALKKAEEETKLKKEKEKEIKKLTAQIEELKSEISKL 99
|
....*.
gi 2462546316 919 SEKLKE 924
Cdd:pfam13863 100 EEKLEE 105
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1001-1266 |
5.84e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1001 EKSRLtaMKMQDEMRLMEEELRD-YQRAQDEALTKRQLLEQ-------TLKDLEYELEAKSHLKDDRS-RLVKQMEDKVS 1071
Cdd:COG5022 737 EDMRD--AKLDNIATRIQRAIRGrYLRRRYLQALKRIKKIQviqhgfrLRRLVDYELKWRLFIKLQPLlSLLGSRKEYRS 814
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1072 QLEMELEEERNnsdLLSERISRSREQME-QVRNELLQERAARqdlecdkiSLERQNK--DLKSRIIHLEGSYRsskeglV 1148
Cdd:COG5022 815 YLACIIKLQKT---IKREKKLRETEEVEfSLKAEVLIQKFGR--------SLKAKKRfsLLKKETIYLQSAQR------V 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1149 VQMEARIAELEDrlesEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLK------------AMKRQVE 1216
Cdd:COG5022 878 ELAERQLQELKI----DVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKkllnnidleegpSIEYVKL 953
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1217 EAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLSRLKKLPSK 1266
Cdd:COG5022 954 PELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAE 1003
|
|
| FapA |
pfam03961 |
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta ... |
766-858 |
5.94e-03 |
|
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta solenoid domain of FapA and its homologs. Members of this family include FapA (flagellar assembly protein A) found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction. This entry shows similarity to pfam03775 suggesting a similar functional role.
Pssm-ID: 461111 [Multi-domain] Cd Length: 272 Bit Score: 39.98 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 766 ALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSntSEQDQAGTEMRVKLLQEENEKLQGRSEELERRV 845
Cdd:pfam03961 142 KTEIEVGVDFPELKEKLEELEKELEELEEELEKLKKRLKKLPKKA--RGQLPPEKREQLEKLLETKNKLSEELEELEEEL 219
|
90
....*....|...
gi 2462546316 846 AQLQRQIEDLKGD 858
Cdd:pfam03961 220 KELKEELESLLGE 232
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
625-941 |
6.78e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 40.83 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 625 ELQRQLQLEVKNQQNIKEERERMRANLEELrsqhnekveenstlqQRLEESEGElrknLEELFQvkmERE--QHQTEIRD 702
Cdd:COG0497 169 ALKKELEELRADEAERARELDLLRFQLEEL---------------EAAALQPGE----EEELEE---ERRrlSNAEKLRE 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 703 LqdqLSEMHDELDsakrseDREKGALieellqakqdlqdlliakeeqeDLLRKRERELtalkgalkEEVSSHDQEMDKLK 782
Cdd:COG0497 227 A---LQEALEALS------GGEGGAL----------------------DLLGQALRAL--------ERLAEYDPSLAELA 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 783 EQydaeLQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEaka 862
Cdd:COG0497 268 ER----LESALIELEEAASELRRYLDSLEFDPERLEEVEERLALLRRLARKYGVTVEELLAYAEELRAELAELENSD--- 340
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462546316 863 kETLKKYEGEIRQLEEALvharKEEKEAVSARRAlenelEAAqgnlsqttqeqKQLSEKLKEEseqkeqLRRLKneMEN 941
Cdd:COG0497 341 -ERLEELEAELAEAEAEL----LEAAEKLSAARK-----KAA-----------KKLEKAVTAE------LADLG--MPN 390
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
839-1089 |
7.18e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 7.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 839 EELERRVAQLQR----QIEDLKGDEAKAKetLKKYEGEIRQLEEALVH---------------ARKEEKEAVSARRALEN 899
Cdd:PRK05771 16 SYKDEVLEALHElgvvHIEDLKEELSNER--LRKLRSLLTKLSEALDKlrsylpklnplreekKKVSVKSLEELIKDVEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 900 ELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKN-EMENERWHLGKTIEklqkemADIVEASRTSTLELQNQLDEY 978
Cdd:PRK05771 94 ELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNfDLDLSLLLGFKYVS------VFVGTVPEDKLEELKLESDVE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 979 KEKNRRElaemqrqlkektlEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEqTLKDLEYELEA----KSH 1054
Cdd:PRK05771 168 NVEYIST-------------DKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSE-LIREIKEELEEiekeRES 233
|
250 260 270
....*....|....*....|....*....|....*
gi 2462546316 1055 LKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSE 1089
Cdd:PRK05771 234 LLEELKELAKKYLEELLALYEYLEIELERAEALSK 268
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
583-936 |
7.60e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.49 E-value: 7.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 583 EKIQTLKSRAAGSAQGNNQACNSTSEVKDLLEQKSKLTIEVaELQRQLQLEVKNQQNIKEERERMRANLEELRSqHNEKV 662
Cdd:pfam05557 139 ERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEI-QSQEQDSEIVKNSKSELARIPELEKELERLRE-HNKHL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 663 EENSTLQQRLEESEGELRKNL-------EELFQVKMEREQHQTE------------------------IRDLQDQ---LS 708
Cdd:pfam05557 217 NENIENKLLLKEEVEDLKRKLereekyrEEAATLELEKEKLEQElqswvklaqdtglnlrspedlsrrIEQLQQReivLK 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 709 EMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDL---LRKRERELTALKGALKEEVSSHDQEMD------ 779
Cdd:pfam05557 297 EENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALvrrLQRRVLLLTKERDGYRAILESYDKELTmsnysp 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 780 ------KLKEQYDAELQALRESVE----------------EATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGR 837
Cdd:pfam05557 377 qlleriEEAEDMTQKMQAHNEEMEaqlsvaeeelggykqqAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 838 SEELERRVAQLQRQIE--DLKGDEAKAKETLKKYE----GEIRQLEEALVHARKEEKEAVSAR-RALENELEAAQGNLSQ 910
Cdd:pfam05557 457 RQRLREQKNELEMELErrCLQGDYDPKKTKVLHLSmnpaAEAYQQRKNQLEKLQAEIERLKRLlKKLEDDLEQVLRLPET 536
|
410 420
....*....|....*....|....*..
gi 2462546316 911 TTQEQKQLSEKLKEESEQKE-QLRRLK 936
Cdd:pfam05557 537 TSTMNFKEVLDLRKELESAElKNQRLK 563
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
827-1105 |
7.84e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 40.44 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 827 LQEENEKLQGRSEELERRVAQLQRQIEDLkgDEAKAKetlkkyEGEIRQLEEA---LVHARKEEKEAVSARRALENELEA 903
Cdd:COG0497 170 LKKELEELRADEAERARELDLLRFQLEEL--EAAALQ------PGEEEELEEErrrLSNAEKLREALQEALEALSGGEGG 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 904 AQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMEnerwhlgktieklqkemadivEASRtstlELQNQLDEYkEKNR 983
Cdd:COG0497 242 ALDLLGQALRALERLAEYDPSLAELAERLESALIELE---------------------EAAS----ELRRYLDSL-EFDP 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 984 RELAEMQRQLkektleaekSRLTAMKmqdemrlmeeelRDYQRAQDEALTKRQLLEQTLKDLEyeleakshlkddrsrlv 1063
Cdd:COG0497 296 ERLEEVEERL---------ALLRRLA------------RKYGVTVEELLAYAEELRAELAELE----------------- 337
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2462546316 1064 kQMEDKVSQLEMELEEERNNSDLLSERISRSREQM-----EQVRNEL 1105
Cdd:COG0497 338 -NSDERLEELEAELAEAEAELLEAAEKLSAARKKAakkleKAVTAEL 383
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
572-1227 |
7.91e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 40.66 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 572 DATKRKVNLVFEKIQTLKSRAAGSAQGNNQACNSTSEVKDLLEQKSKLTIEVAELQRQLQlevknQQNIKEERERMRANL 651
Cdd:pfam15964 35 DSTISEDEQEESLSSVVQNEDSGSPWSELQHSHAVNQLKALLQQQTKKENELSPRRRKLS-----PSRTSEDESSSLPTV 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 652 EELRSQHNEKVEENSTLQQRLEESEGELR--KNLEELFQVKMEREQHQTEIRDLQDQLSE---MHDELDSAKRSEDREKG 726
Cdd:pfam15964 110 HDLVPIINDQSQYIHHLEAEVKFCKEELSemKQRVQVVVLENEKLQQELKSQTQEETLREqtlLDSSGNMQNSWCTPEDS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 727 ALIEE-LLQAKQDLQDLLIAKEEQEDllRKRERELTALKGALKEEVSSHDQEMDKLKEQYdAELQALRESVEEATKNVEV 805
Cdd:pfam15964 190 RVHQTsKRPASHNLAERLKSATTGED--EKWRLELEKLKLLYEAKTEVLESQVKSLRKDL-AESQKTCEDLKERLKHKES 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 806 LASRSNTS----------EQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKY----EG 871
Cdd:pfam15964 267 LVAASTSSrvgglclkcaQHEAVLAQTHTNVHMQTIERLTKERDDLMSALVSVRSSLAEAQQRESSAYEQVKQAvqmtEE 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 872 EIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQK--------EQLRRLKNEMENER 943
Cdd:pfam15964 347 ANFEKTKALIQCEQLKSELERQKERLEKELASQQEKRAQEKEALRKEMKKEREELGATmlalsqnvAQLEAQVEKVTREK 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 944 WHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYK------EKNRREL-AEMQRQLKEKTLEAEKSRLtamKMQDEMRL 1016
Cdd:pfam15964 427 NSLVSQLEEAQKQLASQEMDVTKVCGEMRYQLNQTKmkkdeaEKEHREYrTKTGRQLEIKDQEIEKLGL---ELSESKQR 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1017 MEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSRE 1096
Cdd:pfam15964 504 LEQAQQDAARAREECLKLTELLGESEHQLHLTRLEKESIQQSFSNEAKAQALQAQQREQELTQKMQQMEAQHDKTVNEQY 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1097 QMEQVRNELLQEraarqdlecdkisLERQNKDLKSRIIHLEGSYRSSkeglVVQMEARIAELEDRLESEERDRANLQ--- 1173
Cdd:pfam15964 584 SLLTSQNTFIAK-------------LKEECCTLAKKLEEITQKSRSE----VEQLSQEKEYLQDRLEKLQKRNEELEeqc 646
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 2462546316 1174 LSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLES 1227
Cdd:pfam15964 647 VQHGRMHERMKQRLRQLDKHCQATAQQLVQLLSKQNQLFKERQNLTEEVQSLRS 700
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
815-952 |
8.25e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.46 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 815 QDQAGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEEALvHARKEEKEAvsar 894
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQL-DARAEKLDN---- 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462546316 895 raLENELEAAQGNLSQTTQE----QKQLSEKLKE------ESEQKEQLRRLKNEMENERWHLGKTIEK 952
Cdd:PRK12705 103 --LENQLEEREKALSARELEleelEKQLDNELYRvagltpEQARKLLLKLLDAELEEEKAQRVKKIEE 168
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
874-1113 |
8.43e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 39.90 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 874 RQLEEALVHARKEEKEAVSARRALENELEAAQgnlsqtTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKL 953
Cdd:pfam13868 55 RALEEEEEKEEERKEERKRYRQELEEQIEERE------QKRQEEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQRQL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 954 QKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEALT 1033
Cdd:pfam13868 129 REEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQEKAQDEKAERDELRA 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1034 KRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQVRNELLQERAARQ 1113
Cdd:pfam13868 209 KLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEEFERMLRKQAEDEEIEQEEAEKRRMKR 288
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
609-801 |
8.69e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 8.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 609 VKDLLEQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRanLEELRSQHNEKVEEnstlQQRLEESEGELRKNLEELFQ 688
Cdd:pfam17380 394 VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR--QREVRRLEEERARE----MERVRLEEQERQQQVERLRQ 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 689 VKMEREQHQTeirdlqdqlsEMHDELDSAKRSEDREKGALIEELLQAKQDlqdlLIAKEEQEDLLrkrERELTALKGALK 768
Cdd:pfam17380 468 QEEERKRKKL----------ELEKEKRDRKRAEEQRRKILEKELEERKQA----MIEEERKRKLL---EKEMEERQKAIY 530
|
170 180 190
....*....|....*....|....*....|...
gi 2462546316 769 EEVSSHDQEMDKLKEQYDAELQALRESVEEATK 801
Cdd:pfam17380 531 EEERRREAEEERRKQQEMEERRRIQEQMRKATE 563
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
599-1262 |
8.97e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 8.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 599 NNQACNSTSEVKDLLEQKSKLTIEVAELQRqLQLEVKNQ-QNIKEERERMR--ANLEELRSQHNEKVEEnstLQQRLEES 675
Cdd:TIGR01612 571 NEDSIHLEKEIKDLFDKYLEIDDEIIYINK-LKLELKEKiKNISDKNEYIKkaIDLKKIIENNNAYIDE---LAKISPYQ 646
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 676 EGELRKNLEELFQ-VKMEREQ-HQTEIRDLQDQLSEMHDElDSAKRSEDREKgaliEELLQAKQDLQDLLIAKEEQEDL- 752
Cdd:TIGR01612 647 VPEHLKNKDKIYStIKSELSKiYEDDIDALYNELSSIVKE-NAIDNTEDKAK----LDDLKSKIDKEYDKIQNMETATVe 721
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 753 -----LRKRERELTALKGALKEEVSSH-DQEMDKLKEQYDAELQALRESVEE-ATKNVEVLASRSNTSE-QDQAGTEMRV 824
Cdd:TIGR01612 722 lhlsnIENKKNELLDIIVEIKKHIHGEiNKDLNKILEDFKNKEKELSNKINDyAKEKDELNKYKSKISEiKNHYNDQINI 801
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 825 KLLQEENEKLQ-GRSEELERRVAqlqrqiedLKGDE-AKAKETLKKYEGEIRQLEEALVHARKEEKEAVSArralENELE 902
Cdd:TIGR01612 802 DNIKDEDAKQNyDKSKEYIKTIS--------IKEDEiFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDS----EHEQF 869
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 903 AAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLgKTIEKLQkEMADIVEASRTSTLELQNQLDEYKEKN 982
Cdd:TIGR01612 870 AELTNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNI-NTLKKVD-EYIKICENTKESIEKFHNKQNILKEIL 947
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 983 RRELAEMQR-QLKEKTLEAE-KSRLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTL-----KDLEYELEAKSHL 1055
Cdd:TIGR01612 948 NKNIDTIKEsNLIEKSYKDKfDNTLIDKINELDKAFKDASLNDYEAKNNELIKYFNDLKANLgknkeNMLYHQFDEKEKA 1027
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1056 KDDRSRLVKQMEDKVSQLEM-----------ELEEE--RN----NSDLLSE---RISRSREQMEQVR----NELLQERAA 1111
Cdd:TIGR01612 1028 TNDIEQKIEDANKNIPNIEIaihtsiyniidEIEKEigKNiellNKEILEEaeiNITNFNEIKEKLKhynfDDFGKEENI 1107
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1112 RQDLECDKIS--LERQNKDLKSRIIHLEgSYRSSKEGLVVQMEARIAELEDrleseERDRANLQLSNRRLERKVKELVMQ 1189
Cdd:TIGR01612 1108 KYADEINKIKddIKNLDQKIDHHIKALE-EIKKKSENYIDEIKAQINDLED-----VADKAISNDDPEEIEKKIENIVTK 1181
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1190 VDdehlsltdQKDQLSLRLKAMKRQVEEAEEEIDRLESSK-------KKLQRELEEQMD----MNEHLQGQLNSMKKDLS 1258
Cdd:TIGR01612 1182 ID--------KKKNIYDEIKKLLNEIAEIEKDKTSLEEVKginlsygKNLGKLFLEKIDeekkKSEHMIKAMEAYIEDLD 1253
|
....
gi 2462546316 1259 RLKK 1262
Cdd:TIGR01612 1254 EIKE 1257
|
|
| PRK03659 |
PRK03659 |
glutathione-regulated potassium-efflux system protein KefB; Provisional |
637-702 |
9.05e-03 |
|
glutathione-regulated potassium-efflux system protein KefB; Provisional
Pssm-ID: 179625 [Multi-domain] Cd Length: 601 Bit Score: 40.40 E-value: 9.05e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462546316 637 QQNIKEERERMranLEELRSQHNEKVEenstLQQRLEESegelRKNLEELFQVKMEREQHQTEIRD 702
Cdd:PRK03659 545 QQHFRRLDMRM---LRELMPQHNGDVV----QISRAKEA----RRELEEIFQREMQQERRQLDGWD 599
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1162-1262 |
9.05e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.15 E-value: 9.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 1162 LESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQ-LSLR---LKAMKRQVEEAEEEIDRLESSKKKLQRELE 1237
Cdd:PRK12704 34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKeLRERrneLQKLEKRLLQKEENLDRKLELLEKREEELE 113
|
90 100
....*....|....*....|....*
gi 2462546316 1238 EQMDMNEHLQGQLNSMKKDLSRLKK 1262
Cdd:PRK12704 114 KKEKELEQKQQELEKKEEELEELIE 138
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
616-741 |
9.83e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 39.62 E-value: 9.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462546316 616 KSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEEsegELRKNLEELFQVKMEREQ 695
Cdd:smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPT---ELDRAKEKLKKLLQEIMI 222
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462546316 696 HQTEIRDLQDQLSEMHDELDSAKrsedREKGALIEELLQAKQDLQD 741
Cdd:smart00787 223 KVKKLEELEEELQELESKIEDLT----NKKSELNTEIAEAEKKLEQ 264
|
|
| |
