|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
295-1045 |
8.29e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 8.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 295 QNGKEREIQLEAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQqlvdLHHSESLQRAREQHESIVMGLTKKYEE-- 372
Cdd:PTZ00121 1053 DGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGK----AEEAKKTETGKAEEARKAEEAKKKAEDar 1128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 373 QVLSLQKNLDA--TVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEesQKQCAHLLQSGSVQEVAQLQ 450
Cdd:PTZ00121 1129 KAEEARKAEDArkAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE--VRKAEELRKAEDARKAEAAR 1206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 451 FQLQQAQKAHAMSANMNKALQE--ELTELKDEISLYESAAKLGIHPSDSEGELNIELTESYVDLGIKKVNWKKSKVTSIV 528
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAvkKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA 1286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 529 QEEDPNEELSKDEFILKLKAevqrlLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQvKKDEKSIEVETKTDTSEKPKNQLW 608
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADE-----AKKKAEEAKKADEAKKKAEEAKKKADAAKK-KAEEAKKAAEAAKAEAEAAADEAE 1360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 609 PESSTSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDlcNQMRQMVQDFDHDKQEAVDRCERTYQQHH-EAMKT 687
Cdd:PTZ00121 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED--KKKADELKKAAAAKKKADEAKKKAEEKKKaDEAKK 1438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 688 QIRESLLAKHALEKQQlfEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIQ 767
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAE--EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 768 QLEKewQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQNLEQEKDiaiKGAMKKLEIelelkh 847
Cdd:PTZ00121 1517 KAEE--AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK---NMALRKAEE------ 1585
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 848 cenitkqveiaVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVsvnkrisfavsEAKEKWKSELENMRKNILPGKEL 927
Cdd:PTZ00121 1586 -----------AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI-----------KAEELKKAEEEKKKVEQLKKKEA 1643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 928 EEKihslQKELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQKTE 1007
Cdd:PTZ00121 1644 EEK----KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
730 740 750
....*....|....*....|....*....|....*...
gi 2462543264 1008 LLLQKETELQTCLDQSRREwtMQEAKRIQLEIYQYEED 1045
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKE--AEEDKKKAEEAKKDEEE 1755
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
239-481 |
8.91e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 8.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 239 IQLQVLN-KAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQA 317
Cdd:COG1196 227 AELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 318 LKVNEEQMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESivmgLTKKYEEQVLSLQKNLDATVTALKEQEDICSR 397
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEEL--EEELEELEEELEE----AEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 398 LKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKA-LQEELTE 476
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAeLEEEEEA 460
|
....*
gi 2462543264 477 LKDEI 481
Cdd:COG1196 461 LLELL 465
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
218-764 |
9.95e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 9.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 218 FEGLQQQFLG-ANENSAENMQIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLresQKLFQN 296
Cdd:TIGR02168 346 LEELKEELESlEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR---ERLQQE 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 297 GKEREIQL-EAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVL 375
Cdd:TIGR02168 423 IEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 376 SLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQ 455
Cdd:TIGR02168 503 GFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIK 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 456 AQKAHAMSANMNKALQEELTELKDEISLYESAAKL------GIHPSDSEG---ELNIELTESY--VDLGIKKVNWK---- 520
Cdd:TIGR02168 583 GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllgGVLVVDDLDnalELAKKLRPGYriVTLDGDLVRPGgvit 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 521 ---KSKVTSIVQEEDPNEELSKD-----EFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKK------ 586
Cdd:TIGR02168 663 ggsAKTNSSILERRREIEELEEKieeleEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLArleaev 742
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 587 -------DEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLcnqmrqm 659
Cdd:TIGR02168 743 eqleeriAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL------- 815
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 660 vQDFDHDKQEAVDRCERTyqqhHEAMKTQIRESLLAKHALEKQQLFEAYERTHLQ-----LRSELDKLNKEVTAVQECYL 734
Cdd:TIGR02168 816 -NEEAANLRERLESLERR----IAATERRLEDLEEQIEELSEDIESLAAEIEELEelieeLESELEALLNERASLEEALA 890
|
570 580 590
....*....|....*....|....*....|
gi 2462543264 735 EVCREKDNLELTLRKTTEKEQQTQEKIKEK 764
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEEL 920
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-992 |
7.26e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 7.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 251 QLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKER--EIQ-----LEAQIKALETQIQALKVNEE 323
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEieELQkelyaLANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 324 QMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESIvmgltkkyEEQVLSLQKNLDATVTALKEQEDICSRLKDHVK 403
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDEL--AEELAELEEKLEEL--------KEELESLEAELEELEAELEELESRLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 404 QLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELKDEISL 483
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 484 YESAAKLgihpsdsegelnIELTESYVDLGIKKVNWKKSKVTSIVQEEDPNEELSKDEFILKLKAE-----VQRL----- 553
Cdd:TIGR02168 463 LEELREE------------LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgiLGVLselis 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 554 ------------LGSNSmkRHLVSQLQNDLKDChkkIEDLHQVKKDEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDI 621
Cdd:TIGR02168 531 vdegyeaaieaaLGGRL--QAVVVENLNAAKKA---IAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 622 LLLKNEIQV----------------LQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEA- 684
Cdd:TIGR02168 606 DLVKFDPKLrkalsyllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEk 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 685 ---MKTQIRESLLAKHALEKQQlfEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKtTEKEQQTQEKI 761
Cdd:TIGR02168 686 ieeLEEKIAELEKALAELRKEL--EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ-LSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 762 KEKLIQQLEKEwQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAImIEEQKCTIQQNLEQEKDIAIKGAMKKLEI 841
Cdd:TIGR02168 763 IEELEERLEEA-EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE-LTLLNEEAANLRERLESLERRIAATERRL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 842 ELELKHCENITKQVEIAVQnahqrwlgelpELAEYQalvkAEQKKWEEQHEVSVNKRISfaVSEAKEKWKSELENMRKNI 921
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAA-----------EIEELE----ELIEELESELEALLNERAS--LEEALALLRSELEELSEEL 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 922 lpgKELEEKIHSLQKELELKNEEVpVVIRAELAKARSEWNK-------------EKQEEIHRIQEQNEQDYRQFLDDHRN 988
Cdd:TIGR02168 904 ---RELESKRSELRRELEELREKL-AQLELRLEGLEVRIDNlqerlseeysltlEEAEALENKIEDDEEEARRRLKRLEN 979
|
....
gi 2462543264 989 KINE 992
Cdd:TIGR02168 980 KIKE 983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
664-1236 |
1.37e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 664 DHDKQEAVDRCERTYQQHHEAMKTQiresllAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNL 743
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKKDAEEAKKAE------EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 744 ELT--LRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKtldcgSQTDQVTTSDVISKKEMAIMIEEQKCTIQ 821
Cdd:PTZ00121 1296 KKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA-----KKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 822 QNLEQEKDIAiKGAMKKLEielELKHCENITKQVEIAVQNAHqrwlgELPELAEYQALVKAEQKKWEEQHEVSVNKRISF 901
Cdd:PTZ00121 1371 KKKEEAKKKA-DAAKKKAE---EKKKADEAKKKAEEDKKKAD-----ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 902 AVSEAKEKwKSELENMRKNILPGKELEEKIHSlqKELELKNEEVPvviRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQ 981
Cdd:PTZ00121 1442 EAKKADEA-KKKAEEAKKAEEAKKKAEEAKKA--DEAKKKAEEAK---KADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 982 FLDDHRNKINEVLAAAKedfmKQKTELLLQKETELQTCLDQSRREWTMQEAKRIQLEIYQYEEDILTVLgvllsdTQKEH 1061
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEE----AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL------RKAEE 1585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 1062 ISDSEDKQLLEIMSTCSS-KWMSVQYFEKLKGCIQKAFQdtlpllVENADPEWKKrnMAELSKDSASQGTGQGDPGPAAG 1140
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEeKKMKAEEAKKAEEAKIKAEE------LKKAEEEKKK--VEQLKKKEAEEKKKAEELKKAEE 1657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 1141 HHAQPLALQATEAEADKKKVLEIKDlccghcfQELEKAKQECQDLKGKLEKC----CRHLQHLERKHKAVVEKIGEENNK 1216
Cdd:PTZ00121 1658 ENKIKAAEEAKKAEEDKKKAEEAKK-------AEEDEKKAAEALKKEAEEAKkaeeLKKKEAEEKKKAEELKKAEEENKI 1730
|
570 580
....*....|....*....|
gi 2462543264 1217 VVEELIEENNDMKNKLEELQ 1236
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEAK 1750
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
225-440 |
4.25e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 4.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 225 FLGANENSAENMQIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQL 304
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 305 EAQIKALETQIQALKVNEEQMI----KKSRTTEMAL----ESLKQQLVDLHHSESLQRAREQHesivmgltkkyEEQVLS 376
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLralyRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQ-----------AEELRA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462543264 377 LQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQS 440
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
714-1024 |
2.73e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 714 QLRSELDKLNKEvTAVQECYLEVCREKDNLELTL-----------RKTTEKEQQTQEKIKEKL---IQQLEKEWQSKLdQ 779
Cdd:TIGR02169 195 EKRQQLERLRRE-REKAERYQALLKEKREYEGYEllkekealerqKEAIERQLASLEEELEKLteeISELEKRLEEIE-Q 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 780 TIKAMKKKTLDCGSQTDQVTTSDViskKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEiav 859
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKI---GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 860 qnahqRWLGELPEL-AEYQALVKAEQKKWEEQHEVSVNKRISF----AVSEAKEKWKSELENMRKNILPGKELEEKIHSL 934
Cdd:TIGR02169 347 -----EERKRRDKLtEEYAELKEELEDLRAELEEVDKEFAETRdelkDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 935 QKELELKNEevpvVIRAELAKARSEwNKEKQEEIHRIQEQNEQ------DYRQFLDDHRNKINEVlaaakEDFMKQKTEL 1008
Cdd:TIGR02169 422 LADLNAAIA----GIEAKINELEEE-KEDKALEIKKQEWKLEQlaadlsKYEQELYDLKEEYDRV-----EKELSKLQRE 491
|
330
....*....|....*.
gi 2462543264 1009 LLQKETELQTCLDQSR 1024
Cdd:TIGR02169 492 LAEAEAQARASEERVR 507
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
247-482 |
8.92e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 8.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 247 AKERQLENLIEKLNESERQIR--------------YLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALE 312
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAelekalaelrkeleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 313 TQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESIVMGLTKKyEEQVLSLQKNLDATVTALKEQE 392
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEEL--EAQIEQLKEELKALREALDEL-RAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 393 DICSRLKDHVKQLERNQEAIKLEKTEI---INKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHAM--SANMN 467
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLaaeIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELreLESKR 910
|
250
....*....|....*
gi 2462543264 468 KALQEELTELKDEIS 482
Cdd:TIGR02168 911 SELRRELEELREKLA 925
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
246-439 |
9.61e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 9.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 246 KAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREI-QLEAQIKALETQIQALKVNEEQ 324
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgELEAEIASLERSIAEKERELED 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 325 MIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESIvmgltkkyEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQ 404
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEEL--EREIEEERKRRDKL--------TEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
170 180 190
....*....|....*....|....*....|....*
gi 2462543264 405 LERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQ 439
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELAD 424
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
303-1015 |
2.27e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 303 QLEAQIKALETQIQALKVNEEQMikksRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVLSL---QK 379
Cdd:TIGR00606 180 SATRYIKALETLRQVRQTQGQKV----QEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLknrLK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 380 NLDATVTALKEQEDICSRLKDHVKQLERNqeaiKLEKTEIINKLTRSLEESQKQCAHLLQSgsvqEVAQLQFQLQQAQKA 459
Cdd:TIGR00606 256 EIEHNLSKIMKLDNEIKALKSRKKQMEKD----NSELELKMEKVFQGTDEQLNDLYHNHQR----TVREKERELVDCQRE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 460 HAMSANMNKALQEELTELKDEISLYESAAK----------LGIHPSDSEGELNIELTESYVDLGIKKVNW-------KKS 522
Cdd:TIGR00606 328 LEKLNKERRLLNQEKTELLVEQGRLQLQADrhqehirardSLIQSLATRLELDGFERGPFSERQIKNFHTlvierqeDEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 523 KVTSIVQEEDPNEELSKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKDEKSIEVETKTDTSEK 602
Cdd:TIGR00606 408 KTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAEREL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 603 PKNQlwpESSTSDVVRDDILLLKNE-IQVLQQQNQELKETEGKLRNTnqdlcnQMRQMVQDFDHDKQEAVDRCERTYQQH 681
Cdd:TIGR00606 488 SKAE---KNSLTETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHT------TTRTQMEMLTKDKMDKDEQIRKIKSRH 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 682 HEAMKTQ--------IRESLLAKHALEKQQLFE----------AYERTHLQLRSELDKLNKEVTAVQECYLEVCREKD-- 741
Cdd:TIGR00606 559 SDELTSLlgyfpnkkQLEDWLHSKSKEINQTRDrlaklnkelaSLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDee 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 742 ----NLELTLRKTTEKEQQTQEK--IKEKLIQQLEKEWQS-------------KLDQTIKAMKKKTLDcgSQTDQVTTSD 802
Cdd:TIGR00606 639 sdleRLKEEIEKSSKQRAMLAGAtaVYSQFITQLTDENQSccpvcqrvfqteaELQEFISDLQSKLRL--APDKLKSTES 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 803 VISKKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKL-----EIELELKHCENITKQVE--IAVQNAHQRWLGELPELAE 875
Cdd:TIGR00606 717 ELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLqkvnrDIQRLKNDIEEQETLLGtiMPEEESAKVCLTDVTIMER 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 876 YQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRKNILPGKELEEKIHSLQKEL--------ELKNEEVPV 947
Cdd:TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIqhlksktnELKSEKLQI 876
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462543264 948 VIRAELAKARSEWNKEKQEEIhriqeqneQDYRQFLDDHRNKINEvLAAAKEDFMKQKTELLLQKETE 1015
Cdd:TIGR00606 877 GTNLQRRQQFEEQLVELSTEV--------QSLIREIKDAKEQDSP-LETFLEKDQQEKEELISSKETS 935
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
247-412 |
2.52e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 247 AKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRE-SQKLFQNGKEREIQLEAQIKALETQIQALKVNEEQM 325
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 326 IKKSRTTEMALESLKQQLVDLHhsESLQRAREQHESIVMGLTKKYEEqvlslqknLDATVTALKEQEDicsRLKDHVKQL 405
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALR--AEAAALLEALEEELEALEEALAE--------AEAALRDLRRELR---ELEAEIASL 431
|
....*..
gi 2462543264 406 ERNQEAI 412
Cdd:COG4913 432 ERRKSNI 438
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
237-384 |
2.63e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 237 QIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKD--EKDGLTLSLRESQKLFQNGKEREIQLEAQ------- 307
Cdd:COG3206 206 GLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAqlGSGPDALPELLQSPVIQQLRAQLAELEAElaelsar 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 308 -------IKALETQIQALKVNEEQMIKKSR-TTEMALESLKQQLvdlhhsESLQRAREQHESIVMGLTKKyEEQVLSLQK 379
Cdd:COG3206 286 ytpnhpdVIALRAQIAALRAQLQQEAQRILaSLEAELEALQARE------ASLQAQLAQLEARLAELPEL-EAELRRLER 358
|
....*
gi 2462543264 380 NLDAT 384
Cdd:COG3206 359 EVEVA 363
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
240-775 |
5.09e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 5.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 240 QLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQALK 319
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 320 VNEEQMIKKsrttemaLESLKQQLvdlhhsESLQRAREQHESIVMGLTKKYEE-QVLSLQKNLDATVTALKEQEdicSRL 398
Cdd:TIGR02168 393 LQIASLNNE-------IERLEARL------ERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQ---EEL 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 399 KDHVKQLERNQEAIKlEKTEIINKLTRSLEESQKQCAhllqsgSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELK 478
Cdd:TIGR02168 457 ERLEEALEELREELE-EAEQALDAAERELAQLQARLD------SLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 479 DEISLYESA--AKLGIH------PSDSEGELNIELTE-------SYVDLGIKKVNWKKSKVTSIVQEEDPNEELSKD--E 541
Cdd:TIGR02168 530 SVDEGYEAAieAALGGRlqavvvENLNAAKKAIAFLKqnelgrvTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDlvK 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 542 FILKLKAEVQRLLGSNsmkrHLVSQLQNDLKDCHKKIEDLHQVKKDEKSI---------EVETKTDTSEKpKNQLWPESS 612
Cdd:TIGR02168 610 FDPKLRKALSYLLGGV----LVVDDLDNALELAKKLRPGYRIVTLDGDLVrpggvitggSAKTNSSILER-RREIEELEE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 613 TSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHE--------- 683
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElteleaeie 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 684 AMKTQIRESLLAKHALEK-----QQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQ 758
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAeieelEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
570 580
....*....|....*....|...
gi 2462543264 759 EKIK------EKLIQQLEKEWQS 775
Cdd:TIGR02168 845 EQIEelsediESLAAEIEELEEL 867
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
242-439 |
7.31e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 242 QVLNK-AKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRE--SQKLFQNGKEREIQLEAQIKALETQIQAL 318
Cdd:COG3206 152 AVANAlAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 319 KVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVM---GLTKKYEE---QVLSLQKNLDATVTALK-EQ 391
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAelaELSARYTPnhpDVIALRAQIAALRAQLQqEA 311
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462543264 392 EDICSRLKDHVKQLERNQEAIKLEKTEI-------------INKLTRSLEESQKQCAHLLQ 439
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLearlaelpeleaeLRRLEREVEVARELYESLLQ 372
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
308-982 |
7.84e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 7.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 308 IKALETQIQALKVN----EEQMIKKSRTTEMALESLKQQlvdlhHSESLQRAREQHESIVMGLTKK---YEEQVLSLQKN 380
Cdd:pfam15921 226 LRELDTEISYLKGRifpvEDQLEALKSESQNKIELLLQQ-----HQDRIEQLISEHEVEITGLTEKassARSQANSIQSQ 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 381 LDATVTALKEQEDICSRlkdHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCahLLQSGSVQEVAQLQFQLQQAqkah 460
Cdd:pfam15921 301 LEIIQEQARNQNSMYMR---QLSDLESTVSQLRSELREAKRMYEDKIEELEKQL--VLANSELTEARTERDQFSQE---- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 461 amSANMNKALQEELTELKDEislyesaaklgihpsdsEGELNIELTESyvdlgikKVNWKKSKVTSIV------QEEDPN 534
Cdd:pfam15921 372 --SGNLDDQLQKLLADLHKR-----------------EKELSLEKEQN-------KRLWDRDTGNSITidhlrrELDDRN 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 535 EELSKDEFILKlkaevqrllgsnSMKRHLVSQLQNDLKDCHKKIEDLHQVKkdEKSIEVETKTDTSEKPKNQLWPESSTs 614
Cdd:pfam15921 426 MEVQRLEALLK------------AMKSECQGQMERQMAAIQGKNESLEKVS--SLTAQLESTKEMLRKVVEELTAKKMT- 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 615 dvvrddillLKNEIQVLQQQNQELKETEGKLRNTNQDLcNQMRQMV----QDFDHDKQEAVDRceRTYQQHHEAMKTQIR 690
Cdd:pfam15921 491 ---------LESSERTVSDLTASLQEKERAIEATNAEI-TKLRSRVdlklQELQHLKNEGDHL--RNVQTECEALKLQMA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 691 ESLLAKHALEKQ-----QLFEAYERTHLQLRSELDKLNKEVTavqecylevcreKDNLELTLRKTTEKEQQTQEKIKEKL 765
Cdd:pfam15921 559 EKDKVIEILRQQienmtQLVGQHGRTAGAMQVEKAQLEKEIN------------DRRLELQEFKILKDKKDAKIRELEAR 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 766 IQQLEKEwQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKcTIQQNLeQEKDIAIKGAMKKLEIEL-- 843
Cdd:pfam15921 627 VSDLELE-KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE-VLKRNF-RNKSEEMETTTNKLKMQLks 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 844 ---ELKHCENITKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWE--EQHEVSVNKRISFaVSEAKEKWKSELENM- 917
Cdd:pfam15921 704 aqsELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQflEEAMTNANKEKHF-LKEEKNKLSQELSTVa 782
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462543264 918 -RKNILPGkELeEKIHSLQKELELKNEEVPVVI-RAELAKARSEWNKEKQE-EIHRIQEQNEQDYRQF 982
Cdd:pfam15921 783 tEKNKMAG-EL-EVLRSQERRLKEKVANMEVALdKASLQFAECQDIIQRQEqESVRLKLQHTLDVKEL 848
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
288-730 |
9.48e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 9.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 288 RESQKLF-QNGKEREIQLEaQIKALETQIQALKVNEE---QMIKKSRTTEMALESLKQQLVDL-HHSESLQRAREQHESI 362
Cdd:COG4717 53 KEADELFkPQGRKPELNLK-ELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELrEELEKLEKLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 363 VMGLTKK-----YEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHL 437
Cdd:COG4717 132 QELEALEaelaeLPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 438 LQS-GSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELKDEISLyesAAKLGIHPSDSEGELNIE----LTESYVDL 512
Cdd:COG4717 212 EEElEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAL---LALLGLGGSLLSLILTIAgvlfLVLGLLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 513 GIKKVNWKKSKVTSIVQEEDPNEELSKDEfilklKAEVQRLLGSNSMKRHL-VSQLQNDLKDCHKKIEDLHQVKKDEKSI 591
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQALPALEELE-----EEELEELLAALGLPPDLsPEELLELLDRIEELQELLREAEELEEEL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 592 EVETktdtSEKPKNQLWPESSTSDvvRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAV 671
Cdd:COG4717 364 QLEE----LEQEIAALLAEAGVED--EEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEEL 437
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462543264 672 DRCERTYQQHHEAMKTQIRESLLAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQ 730
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
239-420 |
1.07e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 239 IQLQVLNKAKER------QLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQlEAQIKAlE 312
Cdd:PRK00409 499 LPENIIEEAKKLigedkeKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE-EAEKEA-Q 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 313 TQIQALKVNEEQMIKKSRTTE-MALESLK-QQLVDLH---------HSESLQRAREQHESIVMGLTKKYEE-----QVLS 376
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQkGGYASVKaHELIEARkrlnkanekKEKKKKKQKEKQEELKVGDEVKYLSlgqkgEVLS 656
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462543264 377 LQKNLDATVtalkeQEDICsRLKDHVKQLERNQEAIKLEKTEII 420
Cdd:PRK00409 657 IPDDKEAIV-----QAGIM-KMKVPLSDLEKIQKPKKKKKKKPK 694
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
639-1054 |
1.62e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 639 KETEGKLRNTNQDLcnqmrqmvqdfdhdkqeavDRCERTYQQhheaMKTQIREsllakhaLEKQQlfEAYERtHLQLRSE 718
Cdd:COG1196 175 EEAERKLEATEENL-------------------ERLEDILGE----LERQLEP-------LERQA--EKAER-YRELKEE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 719 LDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEwQSKLDQTIKAMKKKTLDCGSQTDQv 798
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-LEELELELEEAQAEEYELLAELAR- 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 799 TTSDVISKKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNAHQRWLGELPELAEYQA 878
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 879 LVKAEQKKW-EEQHEVSVNKRISFAVSEAKEKWKSELENMRKNILpgKELEEKIHSLQKELELKNEEVPVVIRAELAKAR 957
Cdd:COG1196 380 ELEELAEELlEALRAAAELAAQLEELEEAEEALLERLERLEEELE--ELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 958 SEWNKEKQEEIHRIQEQNEQDYRQfLDDHRNKINEVLAAAKEdfMKQKTELLLQKETELQTcLDQSRREWtmQEAKRIQL 1037
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAE-LLEELAEAAARLLLLLE--AEADYEGFLEGVKAALL-LAGLRGLA--GAVAVLIG 531
|
410
....*....|....*..
gi 2462543264 1038 EIYQYEEDILTVLGVLL 1054
Cdd:COG1196 532 VEAAYEAALEAALAAAL 548
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
743-1045 |
1.68e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 743 LELTLRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQ 822
Cdd:pfam17380 275 LHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 823 NLEQEKDIAikgAMKKLEIELELKHCENItKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVSvnKRISFA 902
Cdd:pfam17380 355 QEERKRELE---RIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM--EQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 903 VSEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKNEEvpvviraELAKARSEWNKEKQEEiHRIQEQNEQDYRQF 982
Cdd:pfam17380 429 QEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEE-------ERKRKKLELEKEKRDR-KRAEEQRRKILEKE 500
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462543264 983 LDDHRNKINEVLAAAK--EDFMKQKTELLLQKEtELQTCLDQSRREWTMQEAKRIQLEIYQYEED 1045
Cdd:pfam17380 501 LEERKQAMIEEERKRKllEKEMEERQKAIYEEE-RRREAEEERRKQQEMEERRRIQEQMRKATEE 564
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
246-429 |
1.79e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 246 KAKERQLENLIEKLNESERQIRYLnhqlviiKDEKDGLTLSLRESQKLFQ--------NGKEREI-QLEAQIKALET--- 313
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEAL-------EAELDALQERREALQRLAEyswdeidvASAEREIaELEAELERLDAssd 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 314 QIQALKVNEEQMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESIVMGLTKKYEEQVLSLQKNLDatvtALKEQED 393
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRL--EKELEQAEEELDELQDRLEAAEDLARLELRALLE----ERFAAAL 759
|
170 180 190
....*....|....*....|....*....|....*.
gi 2462543264 394 ICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEE 429
Cdd:COG4913 760 GDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
237-950 |
5.42e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 237 QIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKD-------GLTLSLRESQKLFQNgkereiqleAQIK 309
Cdd:TIGR00606 427 QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDrileldqELRKAERELSKAEKN---------SLTE 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 310 ALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVLSL------QKNLDA 383
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpnKKQLED 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 384 TVTALKEQEDIcsrLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQ----EVAQLQFQLQQAQKA 459
Cdd:TIGR00606 578 WLHSKSKEINQ---TRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQdeesDLERLKEEIEKSSKQ 654
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 460 HAMSANMNKALQEELTELKDEISlyeSAAKLGIHPSDSEGELNieltESYVDLgikkvnwkKSKVTSIvqeedPNEELSK 539
Cdd:TIGR00606 655 RAMLAGATAVYSQFITQLTDENQ---SCCPVCQRVFQTEAELQ----EFISDL--------QSKLRLA-----PDKLKST 714
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 540 DEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKDEKSievetKTDTSEKPKNQLWPESSTSDVVRD 619
Cdd:TIGR00606 715 ESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN-----DIEEQETLLGTIMPEEESAKVCLT 789
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 620 DILLLKNEIQVLQQQNQELKETEGKLRNTNQDLC-NQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKT-QIRESLLAKH 697
Cdd:TIGR00606 790 DVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQiQHLKSKTNEL 869
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 698 ALEKQQLFEAYERTHlQLRSELDKLNKEvtaVQECYLEVCREKDN---LELTLRK-TTEKEQQTQEKIKEKLIQQLE-KE 772
Cdd:TIGR00606 870 KSEKLQIGTNLQRRQ-QFEEQLVELSTE---VQSLIREIKDAKEQdspLETFLEKdQQEKEELISSKETSNKKAQDKvND 945
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 773 WQSKLDQTIKAMK--KKTLDCGSQTDQVTTSDVISKKEMAI--------MIEEQKCTIQQNLEQEK--DIAIKGAMKKLE 840
Cdd:TIGR00606 946 IKEKVKNIHGYMKdiENKIQDGKDDYLKQKETELNTVNAQLeecekhqeKINEDMRLMRQDIDTQKiqERWLQDNLTLRK 1025
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 841 IELELKHCENITKQVE--------IAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKS 912
Cdd:TIGR00606 1026 RENELKEVEEELKQHLkemgqmqvLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 2462543264 913 ELENMRKNILPGKELEEKIHSLQKEL----ELKNEEVPVVIR 950
Cdd:TIGR00606 1106 MMIVMRTTELVNKDLDIYYKTLDQAImkfhSMKMEEINKIIR 1147
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
632-974 |
6.95e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 6.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 632 QQQNQELKETEGKLRNTNQDLCNQM--RQMVQDFDHDKQEAVDRCERTYQQHHEAMKTQIREsllakhaLEKQQLFEAye 709
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKAREVerRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERE-------LERIRQEER-- 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 710 rthlqlRSELDKLNKEVTAVQecyLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIqqLEKEWQSKLDQTIKAMKKktl 789
Cdd:pfam17380 359 ------KRELERIRQEEIAME---ISRMRELERLQMERQQKNERVRQELEAARKVKI--LEEERQRKIQQQKVEMEQ--- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 790 dcgsqtdqvttsdVISKKEMAIMIEEQKctiqqnLEQEKDIAIKgamKKLEIELELKHcenitkQVEIAVQNAHQRWLGE 869
Cdd:pfam17380 425 -------------IRAEQEEARQREVRR------LEEERAREME---RVRLEEQERQQ------QVERLRQQEEERKRKK 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 870 LPELAEyqalvKAEQKKWEEQHEVSVNKrisfavsEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKneevpvvi 949
Cdd:pfam17380 477 LELEKE-----KRDRKRAEEQRRKILEK-------ELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRR-------- 536
|
330 340
....*....|....*....|....*.
gi 2462543264 950 raelaKARSEWNKEKQ-EEIHRIQEQ 974
Cdd:pfam17380 537 -----EAEEERRKQQEmEERRRIQEQ 557
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
248-342 |
8.80e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 40.70 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 248 KERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQALKVNEEQMIK 327
Cdd:pfam15818 220 KEQKFQELQERLNMELELNKKINEEITHIQEEKQDIIISFQHMQQLLQQQTQANTEMEAELKALKENNQTLERDNELQRE 299
|
90
....*....|....*
gi 2462543264 328 KSRTTEMALESLKQQ 342
Cdd:pfam15818 300 KVKENEEKFLNLQNE 314
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
240-355 |
9.61e-03 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 40.38 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462543264 240 QLQVLNKAKERQLENLIEKLNES----ERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQngkereiqleaqikALETQI 315
Cdd:pfam09798 5 KLELLQQEKEKELEKLKNSYEELksshEEELEKLKQEVQKLEDEKKFLLNELRSLSATSP--------------ASSQSH 70
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2462543264 316 QALKVNEEQM-IKKSRTTEMALESLKQQLVDLHHSESLQRA 355
Cdd:pfam09798 71 ETDTDDSSSVsLKKRKIEESTAESLKQKYIRLQNNRIVDET 111
|
|
| |
