|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
441-693 |
9.78e-43 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 156.81 E-value: 9.78e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 441 YNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTR---DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEK 517
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRrrgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 518 KEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAI 597
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 598 KLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELrLA 676
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDyLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LA 250
|
250
....*....|....*..
gi 2462534726 677 LAQVLAVMGQTKEAEKM 693
Cdd:COG2956 251 LADLLERKEGLEAALAL 267
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
464-701 |
1.38e-39 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 146.69 E-value: 1.38e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 464 LKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYS 540
Cdd:COG0457 1 LELDPDDAEAYNNLGLAyrrLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 541 SLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGEN 620
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 621 SMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSE 700
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
.
gi 2462534726 701 E 701
Cdd:COG0457 241 Y 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
425-667 |
3.15e-39 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 146.80 E-value: 3.15e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 425 LFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQH 501
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDylkAGLLDRAEELLEKLLELDPDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 502 NRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLV 581
Cdd:COG2956 110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 582 DTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQ 661
Cdd:COG2956 190 EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLE 269
|
....*.
gi 2462534726 662 EAAALQ 667
Cdd:COG2956 270 RQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
480-733 |
7.04e-38 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 142.95 E-value: 7.04e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 480 LTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIY 559
Cdd:COG2956 20 LNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 560 QTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAE 638
Cdd:COG2956 100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDpDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 639 ILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVsEETGCLECYRLLSAIYSKQ 718
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-ELDPSDDLLLALADLLERK 258
|
250
....*....|....*
gi 2462534726 719 ENHDKALDAIDKALQ 733
Cdd:COG2956 259 EGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
506-764 |
1.11e-37 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 142.18 E-value: 1.11e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 506 FNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGL 585
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 586 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAA 664
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 665 ALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVI-- 742
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLal 251
|
250 260
....*....|....*....|..
gi 2462534726 743 SELFFTKGNQLREQNLLDKAFE 764
Cdd:COG2956 252 ADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
434-666 |
1.22e-37 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 141.30 E-value: 1.22e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 434 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGN 510
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAylrLGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 511 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAV 590
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534726 591 AHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAAL 666
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
577-832 |
2.41e-37 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 141.41 E-value: 2.41e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 577 GVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEE 655
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDpDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 656 ALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLK 735
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 736 PKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLkE 815
Cdd:COG2956 175 PDCARALLLL----AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-L 249
|
250
....*....|....*..
gi 2462534726 816 NLAKLDRLEKRLQEVRE 832
Cdd:COG2956 250 ALADLLERKEGLEAALA 266
|
|
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
245-319 |
1.55e-36 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 131.88 E-value: 1.55e-36
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534726 245 GGSMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPVTLCYDWQVGSIPLVETIWDMRNLATIFLAVVMA 319
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
455-679 |
3.25e-33 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 136.66 E-value: 3.25e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 455 EAIYHYRTALKLYPRHASALNNLGtltrDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPE 534
Cdd:COG3914 69 AAAAALLLLAALLELAALLLQALG----RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 535 FADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLY 614
Cdd:COG3914 145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534726 615 RSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQ 679
Cdd:COG3914 225 RQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPP 289
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
423-829 |
6.23e-32 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 133.67 E-value: 6.23e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 423 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 499
Cdd:TIGR02917 315 YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAylaLGDFEKAAEYLAKATELDP 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 500 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVF 579
Cdd:TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 580 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA--HKAEILSpLGALYYNTGRYEEAL 657
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpkNLRAILA-LAGLYLRTGNEEEAV 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 658 QIYQEAAALQPSQRELRLALAQVLAVMGQTKeaekmtnhivseetgclecyrllsaiyskqenhdKALDAIDKALQLKPK 737
Cdd:TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLK----------------------------------KALAILNEAADAAPD 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 738 DPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENL 817
Cdd:TIGR02917 600 SP----EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675
|
410
....*....|..
gi 2462534726 818 AKLDRLEKRLQE 829
Cdd:TIGR02917 676 AQLLLAAKRTES 687
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
434-835 |
1.27e-29 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 126.35 E-value: 1.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 434 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT---AEAKMYYQRALQLHPQHNRALFNLGN 510
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEgnpDDAIQRFEKVLTIDPKNLRAILALAG 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 511 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAV 590
Cdd:TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 591 AHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV-AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPS 669
Cdd:TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELkPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 670 QRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLlSAIYSKQENHDKALDAIDKALQLKPKDPKVISELfftk 749
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL---- 776
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 750 GNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHiKGKYVSARAYYERALQLVPDskllkeNLAKLDRLEKRLQE 829
Cdd:TIGR02917 777 AELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL-ELKDPRALEYAERALKLAPN------IPAILDTLGWLLVE 849
|
....*.
gi 2462534726 830 VREKDQ 835
Cdd:TIGR02917 850 KGEADR 855
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
567-806 |
5.20e-29 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 116.26 E-value: 5.20e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 567 PDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGA 645
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 646 LYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKAL 725
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 726 DAIDKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQ 805
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
.
gi 2462534726 806 L 806
Cdd:COG0457 245 A 245
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
433-673 |
5.35e-29 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 123.56 E-value: 5.35e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 433 LPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT---AEAKMYYQRALQLHPQHNRALFNLG 509
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAallALAAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 510 NLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKA 589
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 590 VAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQP 668
Cdd:COG3914 166 IAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDpDNADAHSNLLFALRQACDWEVYDRFEELLAALAR 245
|
....*
gi 2462534726 669 SQREL 673
Cdd:COG3914 246 GPSEL 250
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
423-632 |
7.65e-29 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 116.75 E-value: 7.65e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 423 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 499
Cdd:COG2956 62 IRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIyeqEGDWEKAIEVLERLLKLGP 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 500 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVF 579
Cdd:COG2956 142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462534726 580 LVDTGLPEKAVAHYQQAIKLSPSHHVAMvNLGRLYRSLGENSMAEEWYKRALQ 632
Cdd:COG2956 222 YEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
597-835 |
2.57e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 114.33 E-value: 2.57e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 597 IKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQPsqrelrl 675
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDpDDAEALYNLGLAYLRLGRYEEALADYEQALELDP------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 676 alaqvlavmgqtkeaekmtnhivseetGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLRE 755
Cdd:COG0457 74 ---------------------------DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDA----EALYNLGLALLE 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 756 QNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVREKDQ 835
Cdd:COG0457 123 LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
423-560 |
5.03e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 113.56 E-value: 5.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 423 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 499
Cdd:COG0457 28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAlqaLGRYEEALEDYDKALELDP 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462534726 500 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQ 560
Cdd:COG0457 108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
500-632 |
5.27e-24 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 98.34 E-value: 5.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 500 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVF 579
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2462534726 580 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ 632
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
450-692 |
1.10e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 107.48 E-value: 1.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 450 QGRNKEAIYHYRTALKLYPRHASALNNLG---TLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLK 526
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLAdayAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 527 DSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFL------------------------VD 582
Cdd:TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLasgntaeavktleawlkthpndavLR 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 583 TGLPE---------KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLgENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGR 652
Cdd:TIGR02917 774 TALAElylaqkdydKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLApNIPAILDTLGWLLVEKGE 852
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2462534726 653 YEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEK 692
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
482-827 |
3.96e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 105.55 E-value: 3.96e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 482 RDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQT 561
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 562 GIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEIL 640
Cdd:TIGR02917 219 AIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSApEYLPAL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 641 SPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQEN 720
Cdd:TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 721 HDKALDAIDKALQLKPKDPKVISELFFTKGNQLREQnlldKAFESYRVAVQLN--------------------------- 773
Cdd:TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS----EAIADLETAAQLDpelgradlllilsylrsgqfdkalaaa 454
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462534726 774 -------PDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRL 827
Cdd:TIGR02917 455 kklekkqPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
437-569 |
4.23e-23 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 95.64 E-value: 4.23e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 437 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGNLLK 513
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEIllqLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534726 514 SQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDS 569
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
582-783 |
5.78e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 104.69 E-value: 5.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 582 DTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGAL----------YYNTG 651
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLaallelaallLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 652 RYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKA 731
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462534726 732 LQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNM 783
Cdd:COG3914 173 LELDPDNAEALNNL----GNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
483-603 |
1.53e-21 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 91.41 E-value: 1.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 483 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTG 562
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKA 98
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2462534726 563 IKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSH 603
Cdd:COG4783 99 LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
487-682 |
2.01e-21 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 93.94 E-value: 2.01e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 487 AKMYYQRALQLHPQHNRalfnlgnllksqekkEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNC 566
Cdd:TIGR02521 31 AKIRVQLALGYLEQGDL---------------EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 567 PDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMV--NLGRLYRSLGENSMAEEWYKRALQV-AHKAEILSPL 643
Cdd:TIGR02521 96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSleNAGLCALKAGDFDKAEKYLTRALQIdPQRPESLLEL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2462534726 644 GALYYNTGRYEEA---LQIYQEAAALQPSQRELRLALAQVLA 682
Cdd:TIGR02521 176 AELYYLRGQYKDArayLERYQQTYNQTAESLWLGIRIARALG 217
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
468-780 |
2.37e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 96.22 E-value: 2.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 468 PRHASALNNLGTLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGpEFADAYSSLASLLA 547
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAG-EAAAAAAALLLLAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 548 EQERFKEAeeiyqtgikncpdssdlhnnygvfLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGensmaeewy 627
Cdd:COG3914 80 LLELAALL------------------------LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG--------- 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 628 kralqvahkaeilsplgalyyntgRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLEC 707
Cdd:COG3914 127 ------------------------RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA 182
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534726 708 YRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELFFTKGNQLREQNLldKAFESYRVAVQLNPDQAQAW 780
Cdd:COG3914 183 LNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY--DRFEELLAALARGPSELSPF 253
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
571-692 |
3.45e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 87.55 E-value: 3.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 571 DLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYN 649
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLK 84
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2462534726 650 TGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEK 692
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
606-738 |
4.61e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 87.17 E-value: 4.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 606 AMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVM 684
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDpDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2462534726 685 GQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKD 738
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
426-777 |
1.03e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 94.77 E-value: 1.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 426 FRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGT---LTRDTAEAKMYYQRALQLHPQHN 502
Cdd:TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQyylGKGQLKKALAILNEAADAAPDSP 601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 503 RALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVD 582
Cdd:TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 583 TGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQE 662
Cdd:TIGR02917 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA 761
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 663 AAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENhDKALDAIDKALQLKPKDPKVI 742
Cdd:TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAIL 840
|
330 340 350
....*....|....*....|....*....|....*
gi 2462534726 743 SelffTKGNQLREQNLLDKAFESYRVAVQLNPDQA 777
Cdd:TIGR02917 841 D----TLGWLLVEKGEADRALPLLRKAVNIAPEAA 871
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
669-810 |
3.11e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 84.86 E-value: 3.11e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 669 SQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFT 748
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP----EARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534726 749 KGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDS 810
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
708-820 |
1.71e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 82.36 E-value: 1.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 708 YRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQ 787
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL----AEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|....*.
gi 2462534726 788 HIKGKYVSARAYYERALQLVPDS---KLLKENLAKL 820
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
623-832 |
1.90e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 90.05 E-value: 1.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 623 AEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEET 702
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 703 GCLECYRLLsaiysKQENHDKALDAIDKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMN 782
Cdd:COG3914 81 LELAALLLQ-----ALGRYEEALALYRRALALNPDNAEALFNL----GNLLLALGRLEEALAALRRALALNPDFAEAYLN 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462534726 783 MGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 832
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIA 201
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
426-548 |
2.85e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 81.59 E-value: 2.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 426 FRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHN 502
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAllaAGDTEEAEELLERALALDPDNP 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462534726 503 RALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYsSLASLLAE 548
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR-LLEASIAE 130
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
588-692 |
6.70e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 80.82 E-value: 6.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 588 KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAAL 666
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*.
gi 2462534726 667 QPSQRELRLALAQVLAVMGQTKEAEK 692
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIA 106
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
455-571 |
1.26e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 80.05 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 455 EAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKY 531
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAylrLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2462534726 532 GPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSD 571
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
554-680 |
1.77e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 79.28 E-value: 1.77e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 554 EAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV 633
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2462534726 634 AHK-AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQV 680
Cdd:COG4235 81 DPDnPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
430-598 |
2.12e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 81.89 E-value: 2.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 430 VQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG---TLTRDTAEAKMYYQRALQLHPQHNRALF 506
Cdd:COG4785 66 ALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGlayLLLGDYDAALEDFDRALELDPDYAYAYL 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 507 NLGNLLKSQEKKEEAITLLKDSIKYGPEfaDAYSSLASLLAEQE-RFKEAEEiyqtgikncpdssDLHNNYGVFLVDTGL 585
Cdd:COG4785 146 NRGIALYYLGRYELAIADLEKALELDPN--DPERALWLYLAERKlDPEKALA-------------LLLEDWATAYLLQGD 210
|
170
....*....|...
gi 2462534726 586 PEKAVAHYQQAIK 598
Cdd:COG4785 211 TEEARELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
486-601 |
4.98e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 78.12 E-value: 4.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 486 EAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKN 565
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 2462534726 566 CPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSP 601
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
456-665 |
5.99e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 80.73 E-value: 5.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 456 AIYHYRTALKLYPRHASALNNLGT---LTRDTAEAKMYYQRAlQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYG 532
Cdd:COG4785 25 LLAALLFAAVLALAIALADLALALaaaALAAAALAAERIDRA-LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 533 PEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGR 612
Cdd:COG4785 104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462534726 613 LYRSLGENsmaeewykralqvAHKAEILSPLGALYYNTGRYEEALQIYQEAAA 665
Cdd:COG4785 184 AERKLDPE-------------KALALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
423-535 |
7.11e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.92 E-value: 7.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 423 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 499
Cdd:COG4783 24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAllkAGDYDEALALLEKALKLDP 103
|
90 100 110
....*....|....*....|....*....|....*.
gi 2462534726 500 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEF 535
Cdd:COG4783 104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
520-634 |
8.74e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 77.35 E-value: 8.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 520 EAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKL 599
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 2462534726 600 SPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA 634
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
483-568 |
2.00e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 75.21 E-value: 2.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 483 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKdSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTG 562
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 2462534726 563 IKNCPD 568
Cdd:COG3063 86 LELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
483-632 |
2.16e-16 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 77.31 E-value: 2.16e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 483 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTG 562
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 563 IKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ 632
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
702-832 |
3.12e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.00 E-value: 3.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 702 TGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWM 781
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462534726 782 NMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 832
Cdd:COG4783 77 NLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
545-637 |
3.96e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 74.44 E-value: 3.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 545 LLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAhYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAE 624
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|...
gi 2462534726 625 EWYKRALQVAHKA 637
Cdd:COG3063 80 AYLERALELDPSA 92
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
586-809 |
5.41e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 82.82 E-value: 5.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 586 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV-------------------------------- 633
Cdd:TIGR02917 38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLgypknqvlpllarayllqgkfqqvldelpgkt 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 634 ----AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYR 709
Cdd:TIGR02917 118 llddEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 710 LLSAIYSKQENHDKALDAIDKALQLKPKDPKViseLFFtKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHI 789
Cdd:TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNNIAV---LLA-LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQ 273
|
250 260
....*....|....*....|
gi 2462534726 790 KGKYVSARAYYERALQLVPD 809
Cdd:TIGR02917 274 KKNYEDARETLQDALKSAPE 293
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
580-672 |
1.01e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 73.28 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 580 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEwYKRALQVA-HKAEILSPLGALYYNTGRYEEALQ 658
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDpNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 2462534726 659 IYQEAAALQPSQRE 672
Cdd:COG3063 81 YLERALELDPSALR 94
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
423-552 |
2.27e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 80.42 E-value: 2.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 423 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT---AEAKMYYQRALQLHP 499
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrlEEAIAAYRRALELDP 211
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534726 500 QHNRALFNLGNLLKSQ------EKKEEAITLLKDSIKYGPEFADAYS---SLASLLAEQERF 552
Cdd:COG3914 212 DNADAHSNLLFALRQAcdwevyDRFEELLAALARGPSELSPFALLYLpddDPAELLALARAW 273
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
449-534 |
3.43e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 71.74 E-value: 3.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 449 DQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMyYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLL 525
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLlleQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*....
gi 2462534726 526 KDSIKYGPE 534
Cdd:COG3063 83 ERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
714-809 |
3.97e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 71.35 E-value: 3.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 714 IYSKQENHDKALDAIDKALQLKPKDPKVISELfftkGNQLREQNLLDKAfESYRVAVQLNPDQAQAWMNMGGIQHIKGKY 793
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL----GLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDY 75
|
90
....*....|....*.
gi 2462534726 794 VSARAYYERALQLVPD 809
Cdd:COG3063 76 DEALAYLERALELDPS 91
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
449-810 |
2.99e-14 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 77.05 E-value: 2.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 449 DQGRNKEAIYHYRTALKLYPRHASALNNLG-TLTR--DTAEAKMYYQRALQLHPQHnralFNLG---NLLKSQekkeeai 522
Cdd:PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGqAYSQqgDRARAVAQFEKALALDPHS----SNRDkweSLLKVN------- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 523 tllkdsiKYGPEFADAYSSLasllaEQERFKEAEEIYQTGIKNCPDSSdlhnnYGVF-LVDTGLPEK----AVAHYQQAI 597
Cdd:PRK11447 350 -------RYWLLIQQGDAAL-----KANNLAQAERLYQQARQVDNTDS-----YAVLgLGDVAMARKdyaaAERYYQQAL 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 598 KLSPSHHVAMVNLGRLYR------------SLG---ENSMAEewYKRALQVAhkaeILSPLGALYYNTGRYEEALQIYQE 662
Cdd:PRK11447 413 RMDPGNTNAVRGLANLYRqqspekalafiaSLSasqRRSIDD--IERSLQND----RLAQQAEALENQGKWAQAAELQRQ 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 663 AAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLEcYRLLSAIYSKQENHDKALDAIDKALQ-------LK 735
Cdd:PRK11447 487 RLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE-QVYAYGLYLSGSDRDRAALAHLNTLPraqwnsnIQ 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 736 PKDPKVISELFFTKGNQLREQ-------NLLDKAFESYRVAVQLnPDQAQAwmnmggiqhiKGKYVSARAYYERALQLVP 808
Cdd:PRK11447 566 ELAQRLQSDQVLETANRLRDSgkeaeaeALLRQQPPSTRIDLTL-ADWAQQ----------RGDYAAARAAYQRVLTREP 634
|
..
gi 2462534726 809 DS 810
Cdd:PRK11447 635 GN 636
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
437-567 |
3.19e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 71.14 E-value: 3.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 437 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQE 516
Cdd:COG5010 23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462534726 517 KKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCP 567
Cdd:COG5010 103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
652-808 |
4.56e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 70.37 E-value: 4.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 652 RYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKA 731
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534726 732 LQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVP 808
Cdd:COG5010 81 LQLDPNNPELYYNL----ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
444-668 |
1.03e-13 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 73.02 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 444 ANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDTAEakmyYQRALQL----------HPQHNRALFNLG--NL 511
Cdd:COG3071 92 AELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGD----WEELLELlpalrkhkalSAEEAQALERRAylGL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 512 LKSQEKKEEAITL----LKDSIKYGPEFADAYsslASLLAEQERFKEAEEIYQTGIKNCPDSsDLHNNYGvfLVDTGLPE 587
Cdd:COG3071 168 LRQAARDAEALKAlwkaLPRAERRDPELAAAY---ARALIALGDHDEAERLLREALKRQWDP-RLVRLYG--RLQGGDPA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 588 KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQ 667
Cdd:COG3071 242 KQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHYRKALALA 321
|
.
gi 2462534726 668 P 668
Cdd:COG3071 322 L 322
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
463-601 |
1.88e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 68.83 E-value: 1.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 463 ALKLYPRHASALNNLGTLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSL 542
Cdd:COG5010 15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462534726 543 ASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSP 601
Cdd:COG5010 95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
612-693 |
4.39e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 67.68 E-value: 4.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 612 RLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEA 690
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
...
gi 2462534726 691 EKM 693
Cdd:COG5010 142 KAA 144
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
541-745 |
5.72e-13 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 70.74 E-value: 5.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 541 SLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSH-HVAMVNLGRLyrSLGE 619
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 620 NSMaeEWYKRALQVAhkaeilsplgalyyntgryEEALQIYQEAAALQPSQR-ELRLALAQVLAVMG---QT-----KEA 690
Cdd:cd24142 83 EAL--QYYEKGIEIL-------------------EEELQALQAASAEAEEEAeELKRKLSSALCALAeiyMTdlcdePDA 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 691 EKMTNHIVSEETGC----LECYRLLSAIYSKQENHDKALDAIDKALQL-KPKDPKVISEL 745
Cdd:cd24142 142 EQRCEELITKALELdptnPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEA 201
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
706-809 |
9.10e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 68.40 E-value: 9.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 706 ECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGG 785
Cdd:COG4785 74 QLYYERGVAYDSLGDYDLAIADFDQALELDPDLA----EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149
|
90 100
....*....|....*....|....
gi 2462534726 786 IQHIKGKYVSARAYYERALQLVPD 809
Cdd:COG4785 150 ALYYLGRYELAIADLEKALELDPN 173
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
423-499 |
1.02e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 64.81 E-value: 1.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 423 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIyHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 499
Cdd:COG3063 12 EEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELlleLGDYDEALAYLERALELDP 90
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
434-692 |
1.72e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 70.78 E-value: 1.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 434 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPR-------HASALNNLGtltrDTAEAKMYYQRALQLHPQHNRALF 506
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRvtqsyikRASMNLELG----DPDKAEEDFDKALKLNSEDPDIYY 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 507 NLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLP 586
Cdd:TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 587 EKAVAHYQQAIKLSPSHHVAMVNLGRLyrsLGENSMAEEW---YKRALQVAHKAEILSP--------LGALYYNTGRYEE 655
Cdd:TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPL---INKALALFQWkqdFIEAENLCEKALIIDPecdiavatMAQLLLQQGDVDE 560
|
250 260 270
....*....|....*....|....*....|....*..
gi 2462534726 656 ALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEK 692
Cdd:TIGR00990 561 ALKLFERAAELARTEGELVQAISYAEATRTQIQVQED 597
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
511-604 |
3.43e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 63.27 E-value: 3.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 511 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEiYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAV 590
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....
gi 2462534726 591 AHYQQAIKLSPSHH 604
Cdd:COG3063 80 AYLERALELDPSAL 93
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
623-736 |
1.09e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.83 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 623 AEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEET 702
Cdd:COG5010 40 DELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP 119
|
90 100 110
....*....|....*....|....*....|....
gi 2462534726 703 GCLECYRLLSAIYSKQENHDKALDAIDKALQLKP 736
Cdd:COG5010 120 DNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
723-829 |
1.24e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.72 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 723 KALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYER 802
Cdd:COG4235 1 EAIARLRQALAANPNDA----EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER 76
|
90 100
....*....|....*....|....*..
gi 2462534726 803 ALQLVPDSKLLKENLAKLDRLEKRLQE 829
Cdd:COG4235 77 ALALDPDNPEALYLLGLAAFQQGDYAE 103
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
434-829 |
1.91e-11 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 67.70 E-value: 1.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 434 PHNAKVHYNYANFLKDQGRNKEAIYHYrTALKLYP--RHASALNNLGTLTRDTAEAKMyyQRALQLHPQHNRALFNLGNL 511
Cdd:TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDL-TASCIIDgfRNEQSAQAVERLLKKFAESKA--KEILETKPENLPSVTFVGNY 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 512 LKSQeKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQ---ERFKEAEEIYQTGIkncpDSSDL-------HNNYGVFLV 581
Cdd:TIGR00990 268 LQSF-RPKPRPAGLEDSNELDEETGNGQLQLGLKSPESkadESYEEAARAFEKAL----DLGKLgekeaiaLNLRGTFKC 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 582 DTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRAL-QVAHKAEILSPLGALYYNTGRYEEALQIY 660
Cdd:TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALkLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 661 QEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPK-DP 739
Cdd:TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKEtKP 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 740 KVIS---------ELFFTKGNQLREQNLLDKAfesyrvaVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQL--VP 808
Cdd:TIGR00990 503 MYMNvlplinkalALFQWKQDFIEAENLCEKA-------LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELarTE 575
|
410 420
....*....|....*....|.
gi 2462534726 809 DSKLLKENLAKLDRLEKRLQE 829
Cdd:TIGR00990 576 GELVQAISYAEATRTQIQVQE 596
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
753-832 |
2.78e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.67 E-value: 2.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 753 LREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 832
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
450-778 |
4.95e-11 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 66.65 E-value: 4.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 450 QGRNKEAIYHYRTALKLYPRHASALNNLGTLT---RDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQ--EKKEEAITL 524
Cdd:PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAmarKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQspEKALAFIAS 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 525 LKDSIKygPEFADAYSSL--------ASLLAEQERFKEAEEIYQTGIKNCPDS--------SDLHNN------------- 575
Cdd:PRK11447 444 LSASQR--RSIDDIERSLqndrlaqqAEALENQGKWAQAAELQRQRLALDPGSvwltyrlaQDLRQAgqrsqadalmrrl 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 576 -------------YGVFLVDTGLPEKAVAHYQQ-------------AIKLSPSHHVAMVNlgRLyRSLGENSMAEEWYKR 629
Cdd:PRK11447 522 aqqkpndpeqvyaYGLYLSGSDRDRAALAHLNTlpraqwnsniqelAQRLQSDQVLETAN--RL-RDSGKEAEAEALLRQ 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 630 alQVAhKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYR 709
Cdd:PRK11447 599 --QPP-STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462534726 710 LLSAIYSKQENHDKALDAIDK-ALQLKPKDPKVISELFFTKGNQLREQNLL-DKAFESYR---VAVQLNPDQAQ 778
Cdd:PRK11447 676 RVALAWAALGDTAAAQRTFNRlIPQAKSQPPSMESALVLRDAARFEAQTGQpQQALETYKdamVASGITPTRPQ 749
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
423-499 |
8.72e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.13 E-value: 8.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 423 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 499
Cdd:COG5010 74 LALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALllsLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
646-737 |
1.36e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.64 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 646 LYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMtNHIVSEETGCLECYRLLSAIYSKQENHDKAL 725
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2462534726 726 DAIDKALQLKPK 737
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
525-805 |
1.55e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 61.85 E-value: 1.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 525 LKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNcPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPShh 604
Cdd:COG4785 29 LLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPD-- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 605 vamvnlgrlyrslgensMAEEWYKRalqvahkaeilsplGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVM 684
Cdd:COG4785 106 -----------------LAEAYNNR--------------GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 685 GQTKEAEkmtnhivseetgclecyrllsaiyskqenhdkalDAIDKALQLKPKDPKVISELFFTKGnqlreqnlldkafe 764
Cdd:COG4785 155 GRYELAI----------------------------------ADLEKALELDPNDPERALWLYLAER-------------- 186
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2462534726 765 syrvavQLNPDQAQAWMNM--GGIQHIKGKYVSARAYYERALQ 805
Cdd:COG4785 187 ------KLDPEKALALLLEdwATAYLLQGDTEEARELFKLALA 223
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
434-560 |
4.62e-10 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 60.81 E-value: 4.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 434 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRAL--QLHPQHNRALFNL 508
Cdd:TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFlcqQGKYEQAMQQFEQAIedPLYPQPARSLENA 141
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2462534726 509 GNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQ 560
Cdd:TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
443-809 |
5.67e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 62.69 E-value: 5.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 443 YANFLKDQG----RNKE---AIYHYRTALKL------YPRHASALNNLGTLTRDTAEAKmyyqRALQLHPQHNRALFNLG 509
Cdd:TIGR00990 126 YAAKLKEKGnkayRNKDfnkAIKLYSKAIECkpdpvyYSNRAACHNALGDWEKVVEDTT----AALELDPDYSKALNRRA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 510 NLLKSQEKKEEAITLLKDSIKYGpEFADAYSS--LASLLAEQERFKeAEEIYQTGIKNCPDSSDLHNNYGVFLvdtglPE 587
Cdd:TIGR00990 202 NAYDGLGKYADALLDLTASCIID-GFRNEQSAqaVERLLKKFAESK-AKEILETKPENLPSVTFVGNYLQSFR-----PK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 588 KAVAHYQQAIKLSPSHHVAMVNLGRlyRSLgeNSMAEEWYKRALQVahkaeilsplgalyyntgrYEEALQiyqeaaalq 667
Cdd:TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGL--KSP--ESKADESYEEAARA-------------------FEKALD--------- 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 668 psqrelrlalaqvlavMGQTKEAEKmtnhIVSEETGCLECYRllsaiyskqENHDKALDAIDKALQLKPKdpkvISELFF 747
Cdd:TIGR00990 323 ----------------LGKLGEKEA----IALNLRGTFKCLK---------GKHLEALADLSKSIELDPR----VTQSYI 369
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534726 748 TKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 809
Cdd:TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
482-570 |
7.08e-10 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 57.31 E-value: 7.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 482 RDTAEAKMYYQRALQLHPQHN---RALFNLGNLLKSQEKKEEAITLLKDSIKYGPE---FADAYSSLASLLAEQERFKEA 555
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKA 86
|
90
....*....|....*
gi 2462534726 556 EEIYQTGIKNCPDSS 570
Cdd:COG1729 87 RATLEELIKKYPDSE 101
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
450-693 |
9.80e-10 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 61.08 E-value: 9.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 450 QGRNKEAIYHYRTALKLYPRHASAlnnlgtltRDTAEAKMYYQ------------RALQLHPQHNRALFNLGNLLKSQEK 517
Cdd:COG3071 63 LGDYERRDEYLAQALELAPEAELA--------VLLTRAELLLDqgqaeqalatleALRAGAPRHPQVLRLLLQAYRQLGD 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 518 KEEAITLLKDSIKYGPEFADAYSSLAsLLAEQERFKEA---EEIYQTGIKNCPDS----SDLHNNYGVFLVDTGLPEKAV 590
Cdd:COG3071 135 WEELLELLPALRKHKALSAEEAQALE-RRAYLGLLRQAardAEALKALWKALPRAerrdPELAAAYARALIALGDHDEAE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 591 AHYQQAIKLSPSHHvamvnLGRLYRSLGENSmAEEWYKRALQVAHK----AEILSPLGALYYNTGRYEEALQIYQEAAAL 666
Cdd:COG3071 214 RLLREALKRQWDPR-----LVRLYGRLQGGD-PAKQLKRAEKWLKKhpndPDLLLALGRLCLRNQLWGKAREYLEAALAL 287
|
250 260
....*....|....*....|....*..
gi 2462534726 667 QPSqRELRLALAQVLAVMGQTKEAEKM 693
Cdd:COG3071 288 RPS-AEAYAELARLLEQLGDPEEAAEH 313
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
753-832 |
1.10e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.95 E-value: 1.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 753 LREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYyERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 832
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
449-545 |
1.65e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 56.15 E-value: 1.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 449 DQGRNKEAIYHYRTALKLYPRH---ASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNR---ALFNLGNLLKSQEKKE 519
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAyyaLGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYD 84
|
90 100
....*....|....*....|....*....
gi 2462534726 520 EAITLLKDSIKYGP---EFADAYSSLASL 545
Cdd:COG1729 85 KARATLEELIKKYPdseAAKEARARLARL 113
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
717-823 |
1.76e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 56.15 E-value: 1.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 717 KQENHDKALDAIDKALQLKPKDPKVISELFFtKGNQLREQNLLDKAFESYRVAVQLNPD---QAQAWMNMGGIQHIKGKY 793
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPLAPDALYW-LGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDY 83
|
90 100 110
....*....|....*....|....*....|
gi 2462534726 794 VSARAYYERALQLVPDSKLLKENLAKLDRL 823
Cdd:COG1729 84 DKARATLEELIKKYPDSEAAKEARARLARL 113
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
486-734 |
5.90e-09 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 58.41 E-value: 5.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 486 EAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPE-FADAYSSLASLLAEqerfKEAEEIYQTGIK 564
Cdd:cd24142 18 LALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGG----EEALQYYEKGIE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 565 NCpdssdlhnnygvflvdtglpEKAVAHYQQAIKLSPSHHVAMVN-LGRLYRSLGENSMA------------EEWYKRAL 631
Cdd:cd24142 94 IL--------------------EEELQALQAASAEAEEEAEELKRkLSSALCALAEIYMTdlcdepdaeqrcEELITKAL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 632 QVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAAL---------------------QPSqRELRLALAQVLAVMGQTKE 689
Cdd:cd24142 154 ELDPTnPEALQTLASLRISQQRPDEAKEALRRSLELwkdlkeedeeeaeedeaeeedVPS-YEFRISLAKLLIELEMYEE 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2462534726 690 AEKMTNHIVSEETGCLE-------CYRLLS--AIYSKQENHDKALDAIDKALQL 734
Cdd:cd24142 233 ALEVLEQLLDEDDEDVEvwyllgwAYYLLGekEQEEAAELLRDARELLEKALKL 286
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
718-810 |
6.32e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.23 E-value: 6.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 718 QENHDKALDAIDKALQLKPKDPKVIsELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSAR 797
Cdd:COG4785 49 AAAALAAAALAAERIDRALALPDLA-QLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAAL 127
|
90
....*....|...
gi 2462534726 798 AYYERALQLVPDS 810
Cdd:COG4785 128 EDFDRALELDPDY 140
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
651-714 |
7.76e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 52.59 E-value: 7.76e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462534726 651 GRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAI 714
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
761-832 |
9.20e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 9.20e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462534726 761 KAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 832
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE 72
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
443-666 |
2.15e-08 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 55.70 E-value: 2.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 443 YANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL-------TRDTAEAKMYYQR-ALQLHPqhnRALFNLGNLLKS 514
Cdd:COG0790 35 AAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMyaegrgvPKDYEKALEWFEKaAEQGDA---EAQYNLGLMYEE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 515 ----QEKKEEAITLLKDSIKYGpeFADAYSSLASLlaeqerfkeaeeiYQTGIKNCPDssdlhnnygvflvdtglPEKAV 590
Cdd:COG0790 112 glgvPQDYAKALEWYEKAAEQG--DADAQYNLGLL-------------YLNGEGVPKD-----------------PAKAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 591 AHYQQAIKLSpsHHVAMVNLGRLYRSlGE-----NSMAEEWYKRALQVAHKAEILSpLGALYYN----TGRYEEALQIYQ 661
Cdd:COG0790 160 EWYRKAAEQG--DADAQYNLGVLYEN-GRgvpkdPAKALEWYRKAAEQGDADAQYN-LGRLYLNgegvEKDLEKALRWLR 235
|
....*
gi 2462534726 662 EAAAL 666
Cdd:COG0790 236 KAAEQ 240
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
606-669 |
2.39e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 51.62 E-value: 2.39e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534726 606 AMVNLGRLYRSLGENSMAEEWYKRALQVAHK---------AEILSPLGALYYNTGRYEEALQIYQEAAALQPS 669
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRllgpdhpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
483-734 |
2.44e-08 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 56.55 E-value: 2.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 483 DTAEAKMYYQRALQLHP--QHNR---ALFNLG-------NLLKSQEKKEEAITLLKDsIKYGPEFADAYSSLASLLAEQE 550
Cdd:pfam17874 16 DAERALELAEQALALLPedDLLArglATFVLGeaylclgDLDAALQAMREAEALARR-ADSPHVTLWALLQQGEILRAQG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 551 RFKEAEEIYQTGIKNCPDSS--------DLHNNYGVFLVDTGLPEKAVAHYQQAIKL----SPSHHV-AMVNLGRLYRSL 617
Cdd:pfam17874 95 RLHQALETYQQALQLARDHGlqhlplhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLgrqwEPDAAVdAYVLLARIALAQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 618 GENSMAEEWYKRALQVAHK--------AEILSPLGALYYNTGRYEEALQIYQEAAALQPS-----QRELRLaLAQVLAVM 684
Cdd:pfam17874 175 GELEEALTLLRRAELLARQsffhvdwlANAERVRVRLWLARGDLRAAVRWLRAAEPPSDAdnhflERELRN-LARVLLAL 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534726 685 GQTKEAEKMTN--HIVSEETG----CLECYRLLSAIYSKQENHDKALDAIDKALQL 734
Cdd:pfam17874 254 GRFDDALSLLErlQNLAEQLGrvrsLIENLILQALALLALGRPDEALQALLDALSL 309
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
746-834 |
4.08e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.51 E-value: 4.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 746 FFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAK------ 819
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQdylkag 90
|
90
....*....|....*.
gi 2462534726 820 -LDRLEKRLQEVREKD 834
Cdd:COG2956 91 lLDRAEELLEKLLELD 106
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
546-632 |
5.03e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.92 E-value: 5.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 546 LAEQERFKEAEEIYQTGIKNCPDSS---DLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHV---AMVNLGRLYRSLGE 619
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90
....*....|...
gi 2462534726 620 NSMAEEWYKRALQ 632
Cdd:COG1729 83 YDKARATLEELIK 95
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
580-809 |
6.40e-08 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 55.30 E-value: 6.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 580 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGEnsmaeewYKRALQVA---HKAEILSPLGALYYNTGRYEEA 656
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGD-------WEELLELLpalRKHKALSAEEAQALERRAYLGL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 657 L-QIYQEAAALQ-------PSQR---ELRLALAQVLAVMGQTKEAEKMTNHIVSEE--TGCLECYRLLsaiysKQENHDK 723
Cdd:COG3071 168 LrQAARDAEALKalwkalpRAERrdpELAAAYARALIALGDHDEAERLLREALKRQwdPRLVRLYGRL-----QGGDPAK 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 724 ALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDqAQAWMNMGGIQHIKGKYVSARAYYERA 803
Cdd:COG3071 243 QLKRAEKWLKKHPNDP----DLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKA 317
|
....*.
gi 2462534726 804 LQLVPD 809
Cdd:COG3071 318 LALALG 323
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
580-679 |
8.18e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.15 E-value: 8.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 580 LVDTGLPEKAVAHYQQAIKLSPSHHV---AMVNLGRLYRSLGENSMAEEWYKRALQvAHKAEILSP-----LGALYYNTG 651
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLK-RYPDSPKAPdallkLGLSYLELG 81
|
90 100
....*....|....*....|....*...
gi 2462534726 652 RYEEALQIYQEAAALQPSQRELRLALAQ 679
Cdd:COG1729 82 DYDKARATLEELIKKYPDSEAAKEARAR 109
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
411-527 |
9.85e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.86 E-value: 9.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 411 KTVKQNEIWLSREslfrsgvqtlPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG--TLTRDTAEAK 488
Cdd:TIGR02917 754 EAVKTLEAWLKTH----------PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAwlYLELKDPRAL 823
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534726 489 MYYQRALQLHP-----------------QHNRAL-----------------FNLGNLLKSQEKKEEAITLLKD 527
Cdd:TIGR02917 824 EYAERALKLAPnipaildtlgwllvekgEADRALpllrkavniapeaaairYHLALALLATGRKAEARKELDK 896
|
|
| pgaA |
PRK10049 |
outer membrane protein PgaA; Provisional |
647-758 |
1.69e-07 |
|
outer membrane protein PgaA; Provisional
Pssm-ID: 236644 [Multi-domain] Cd Length: 765 Bit Score: 55.11 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 647 YYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLEcYRLLSAIYSKQENHDKALD 726
Cdd:PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137
|
90 100 110
....*....|....*....|....*....|...
gi 2462534726 727 AIDKALQLKPKDPKVISELFFT-KGNQLREQNL 758
Cdd:PRK10049 138 AMTQALPRAPQTQQYPTEYVQAlRNNRLSAPAL 170
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
647-785 |
3.56e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 50.83 E-value: 3.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 647 YY-------NTGRYEEALQIYQEAAALQ--PSQRelrlalAQVLAVMGqtkeaekmtnhivseetgclecyrllsAIYSK 717
Cdd:PRK02603 38 YYrdgmsaqADGEYAEALENYEEALKLEedPNDR------SYILYNMG---------------------------IIYAS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 718 QENHDKALDAIDKALQLKPKDP---KVISELFFTKGNQLREQ-------NLLDKAFESYRVAVQLNPD---QAQAWMNMG 784
Cdd:PRK02603 85 NGEHDKALEYYHQALELNPKQPsalNNIAVIYHKRGEKAEEAgdqdeaeALFDKAAEYWKQAIRLAPNnyiEAQNWLKTT 164
|
.
gi 2462534726 785 G 785
Cdd:PRK02603 165 G 165
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
469-636 |
3.57e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 52.99 E-value: 3.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 469 RHASALNNLGTLTRDTAEAKMYYQ---RALQLHPqhnRALFNLGNLLKSQEKKEEAITLLKDSIKYG--PEFADAYSSLA 543
Cdd:COG3071 160 ERRAYLGLLRQAARDAEALKALWKalpRAERRDP---ELAAAYARALIALGDHDEAERLLREALKRQwdPRLVRLYGRLQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 544 SLLAEqERFKEAEEIyqtgIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVnLGRLYRSLGENSMA 623
Cdd:COG3071 237 GGDPA-KQLKRAEKW----LKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAE-LARLLEQLGDPEEA 310
|
170
....*....|...
gi 2462534726 624 EEWYKRALQVAHK 636
Cdd:COG3071 311 AEHYRKALALALG 323
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
435-568 |
4.75e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 52.61 E-value: 4.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 435 HNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH--ASALNNLGTLTRDTAEAKMyyQRALQLHPQHNRALFNLGNLL 512
Cdd:COG3071 191 RDPELAAAYARALIALGDHDEAERLLREALKRQWDPrlVRLYGRLQGGDPAKQLKRA--EKWLKKHPNDPDLLLALGRLC 268
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534726 513 KSQEKKEEAITLLKDSIKYGPEfADAYSSLASLLAEQERFKEAEEIYQTGIKNCPD 568
Cdd:COG3071 269 LRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
568-634 |
6.04e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.77 E-value: 6.04e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534726 568 DSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLS-----PSHH---VAMVNLGRLYRSLGENSMAEEWYKRALQVA 634
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHPltaTTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
421-568 |
8.05e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 52.68 E-value: 8.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 421 SRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKL-------YPRHASALNNLGTLTR---DTAEAKMY 490
Cdd:TIGR00990 451 SSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELeketkpmYMNVLPLINKALALFQwkqDFIEAENL 530
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462534726 491 YQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSikygPEFADAYSSLASLLAeqerFKEAEEIYQTGIKNCPD 568
Cdd:TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA----AELARTEGELVQAIS----YAEATRTQIQVQEDYPV 600
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
583-734 |
9.98e-07 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 51.54 E-value: 9.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 583 TGLPEKAVAHYQQAIKLSPS--HHVAMV---NLGRLYRSLGENSMAEEWYKRALQVAHKAEI-------LSPLGALYYNT 650
Cdd:pfam17874 14 KGDAERALELAEQALALLPEddLLARGLatfVLGEAYLCLGDLDAALQAMREAEALARRADSphvtlwaLLQQGEILRAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 651 GRYEEALQIYQEAAALQPSQRELRL--------ALAQVLAVMGQTKEAE-----------KMTNHIVseetgcLECYRLL 711
Cdd:pfam17874 94 GRLHQALETYQQALQLARDHGLQHLplhgfllvGLADLLYEWNDLEEAEqhaqqgiqlgrQWEPDAA------VDAYVLL 167
|
170 180
....*....|....*....|...
gi 2462534726 712 SAIYSKQENHDKALDAIDKALQL 734
Cdd:pfam17874 168 ARIALAQGELEEALTLLRRAELL 190
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
437-500 |
1.32e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.61 E-value: 1.32e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462534726 437 AKVHYNYANFLKDQGRNKEAIYHYRTALKLY--------PRHASALNNLGTLTR---DTAEAKMYYQRALQLHPQ 500
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLelgRYEEALELLERALALAEK 77
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
534-662 |
1.43e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 50.27 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 534 EFADAYSS---LASLLAEQERFKEAEEIYQTGIK-NCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSH--HVAM 607
Cdd:COG4700 84 EFADTVQNrvrLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAH 163
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2462534726 608 VNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQE 662
Cdd:COG4700 164 LLYARALEALGDLEAAEAELEALARRYSGPEARYRYAKFLARQGRTAEAKELLEE 218
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
431-775 |
1.47e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 52.01 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 431 QTLPHNAKVHYNYANFLKDQGRNKEAIyhyrTALKLYPRHASAlnnlgtltRDTAeAKMYYQ--RALQLHPQHNRAL--- 505
Cdd:PRK11447 175 ADYPGNTGLRNTLALLLFSSGRRDEGF----AVLEQMAKSPAG--------RDAA-AQLWYGqiKDMPVSDASVAALqky 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 506 ---FNLGNLL-KSQEKKEEAITLLKDsikygPEFADAYSSLAslLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLV 581
Cdd:PRK11447 242 lqvFSDGDSVaAARSQLAEQQKQLAD-----PAFRARAQGLA--AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYS 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 582 DTGLPEKAVAHYQQAIKLSPSHHvamvNLGRlYRSLGENSMaeewYKRALQVAHKAeilspLGAlyyntGRYEEALQIYQ 661
Cdd:PRK11447 315 QQGDRARAVAQFEKALALDPHSS----NRDK-WESLLKVNR----YWLLIQQGDAA-----LKA-----NNLAQAERLYQ 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 662 EAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYsKQENHDKALDAIDkalQLKPKDPKV 741
Cdd:PRK11447 376 QARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQSPEKALAFIA---SLSASQRRS 451
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2462534726 742 ISEL--------FFTKGNQLREQNLLDKAFESYRVAVQLNPD 775
Cdd:PRK11447 452 IDDIerslqndrLAQQAEALENQGKWAQAAELQRQRLALDPG 493
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
637-737 |
2.52e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.84 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 637 AEILSPLGALYYNTGRYEEALQIYQEAAALQpsqrelrlalaqvlavmgqtkEAEKMTNHIvseetGCLECYRLLSAIYS 716
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIA---------------------RRLLGPDHP-----LTATTLLNLGRLYL 56
|
90 100
....*....|....*....|.
gi 2462534726 717 KQENHDKALDAIDKALQLKPK 737
Cdd:pfam13424 57 ELGRYEEALELLERALALAEK 77
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
503-603 |
4.21e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 4.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 503 RALFNLGNLlksqekkEEAITLLKDSIKYGPE---FADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSS---DLHNNY 576
Cdd:COG1729 1 KALLKAGDY-------DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKL 73
|
90 100
....*....|....*....|....*..
gi 2462534726 577 GVFLVDTGLPEKAVAHYQQAIKLSPSH 603
Cdd:COG1729 74 GLSYLELGDYDKARATLEELIKKYPDS 100
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
444-558 |
4.82e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 49.16 E-value: 4.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 444 ANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHN-RALFNLG---------- 509
Cdd:cd24142 7 AEELLDQGNFELALKFLQRALELEPNNVEALELLGEIlleLGDVEEAREVLLRAIELDPDGGyEKYLYLGqlsggeealq 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 510 ----------NLLKSQEKK---------------------------------EEA----ITLLKDSIKYGPEFADAYSSL 542
Cdd:cd24142 87 yyekgieileEELQALQAAsaeaeeeaeelkrklssalcalaeiymtdlcdePDAeqrcEELITKALELDPTNPEALQTL 166
|
170
....*....|....*.
gi 2462534726 543 ASLLAEQERFKEAEEI 558
Cdd:cd24142 167 ASLRISQQRPDEAKEA 182
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
423-504 |
8.88e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 45.37 E-value: 8.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 423 ESLFRSGVQTLPHN---AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH---ASALNNLGTL---TRDTAEAKMYYQR 493
Cdd:COG1729 13 IAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSyleLGDYDKARATLEE 92
|
90
....*....|.
gi 2462534726 494 ALQLHPQHNRA 504
Cdd:COG1729 93 LIKKYPDSEAA 103
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
552-642 |
9.53e-06 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 46.59 E-value: 9.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 552 FKEAEEIYQTGIK---NCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSM------ 622
Cdd:PRK02603 51 YAEALENYEEALKleeDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEeagdqd 130
|
90 100
....*....|....*....|.
gi 2462534726 623 -AEEWYKRALQVAHKAEILSP 642
Cdd:PRK02603 131 eAEALFDKAAEYWKQAIRLAP 151
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
716-819 |
1.33e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 46.20 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 716 SKQENHD--KALDAIDKALQLKpKDPKVISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGK- 792
Cdd:PRK02603 44 SAQADGEyaEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEk 122
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2462534726 793 -------------YVSARAYYERALQLVPDSKLLKENLAK 819
Cdd:PRK02603 123 aeeagdqdeaealFDKAAEYWKQAIRLAPNNYIEAQNWLK 162
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
613-693 |
1.54e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.60 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 613 LYRSlGENSMAEEWYKRALQV----AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQR---ELRLALAQVLAVMG 685
Cdd:COG1729 3 LLKA-GDYDEAIAAFKAFLKRypnsPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELG 81
|
....*...
gi 2462534726 686 QTKEAEKM 693
Cdd:COG1729 82 DYDKARAT 89
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
586-693 |
2.26e-05 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 47.50 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 586 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ--VAHKAEILSPLGALYYNTGRYEEALQIYQEA 663
Cdd:PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEqdPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275
|
90 100 110
....*....|....*....|....*....|
gi 2462534726 664 AALQPSQrELRLALAQVLAVMGQTKEAEKM 693
Cdd:PRK11788 276 LEEYPGA-DLLLALAQLLEEQEGPEAAQAL 304
|
|
| HemYx |
COG3898 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ... |
483-679 |
2.41e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];
Pssm-ID: 443105 [Multi-domain] Cd Length: 468 Bit Score: 47.58 E-value: 2.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 483 DTAEAKMYYQRALQLHPQH---NRALFNLgnllKSQEKK-EEAITLLKDSIKYGPEFADAYSSL-ASLLAEQERfkEAEE 557
Cdd:COG3898 167 DTEAALALAEEALALAPKLpwaQDALLEL----QAAAGDwDGALATLDAALKAGLLDKDVARRRrAVLLTARAR--ELEE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 558 iyqtgikncpdssdlhnnygvflvdtGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENsmaeewyKRALQVAHKA 637
Cdd:COG3898 241 --------------------------GDPDEARELAIEALKLAPDLVPAAVLAARLLIAQGKL-------RKAAKVLEKA 287
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462534726 638 EILSP---LGALYYNTGRYEEALQIYQEA---AALQPSQRELRLALAQ 679
Cdd:COG3898 288 WRAQPhpdLAAAYAELRPGDSALDRLKRAetlAALNPDHPESRLALAE 335
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
567-822 |
2.56e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 48.16 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 567 PDSSDLHNNYGVFLVDTGLPEKAVAHYQQaiklspshhVAMVNLGRlyrslgeNSMAEEWYKralQVahKAEILSPLG-- 644
Cdd:PRK11447 178 PGNTGLRNTLALLLFSSGRRDEGFAVLEQ---------MAKSPAGR-------DAAAQLWYG---QI--KDMPVSDASva 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 645 ALYYNTGRYEEALQIYQEAAALQPSQREL-------RL-ALAQVLAvmGQTKEAEKMTNHIVSEETGCLECYRLLSAIYS 716
Cdd:PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLadpafraRAqGLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYS 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 717 KQENHDKALDAIDKALQLKPKDPKvISE-----------LFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGG 785
Cdd:PRK11447 315 QQGDRARAVAQFEKALALDPHSSN-RDKwesllkvnrywLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGD 393
|
250 260 270
....*....|....*....|....*....|....*..
gi 2462534726 786 IQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDR 822
Cdd:PRK11447 394 VAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
471-530 |
3.62e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.76 E-value: 3.62e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462534726 471 ASALNNLGTLTR---DTAEAKMYYQRALQL--------HPQHNRALFNLGNLLKSQEKKEEAITLLKDSIK 530
Cdd:pfam13424 3 ATALNNLAAVLRrlgRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
586-824 |
5.12e-05 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 46.34 E-value: 5.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 586 PEKAVAHYQQAIKLSPS---HHVAmvnLGRLYRSLGEnsmaeewYKRALQVaHKAEILSPlgalyyntgryeealqiyqe 662
Cdd:PRK11788 51 PDKAIDLFIEMLKVDPEtveLHLA---LGNLFRRRGE-------VDRAIRI-HQNLLSRP-------------------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 663 aaALQPSQREL-RLALAQ-VLAVmGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKD-P 739
Cdd:PRK11788 100 --DLTREQRLLaLQELGQdYLKA-GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSlR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 740 KVIS----ELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQ----LVPDS- 810
Cdd:PRK11788 177 VEIAhfycEL----AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEqdpeYLSEVl 252
|
250
....*....|....
gi 2462534726 811 KLLKENLAKLDRLE 824
Cdd:PRK11788 253 PKLMECYQALGDEA 266
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
440-561 |
5.44e-05 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 45.64 E-value: 5.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 440 HYNYANFLKDQGRNKEAIYHYRTALK-LYPRHASALNNLG---TLTRDTAEAKMYYQRALQLHPQHNR--ALFNLGNLLK 513
Cdd:COG4700 92 RVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAqalFELGRYAEALETLEKLIAKNPDFKSsdAHLLYARALE 171
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2462534726 514 SQEKKEEAITLLKDSIKYGPeFADAYSSLASLLAEQERFKEAEEIYQT 561
Cdd:COG4700 172 ALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEE 218
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
718-833 |
7.22e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 45.70 E-value: 7.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 718 QENHDKALDAIDKALQLKPKDPKVIsELFftkGNQLREQNLLDKAFESYRVAVQLNPDQ-AQAWMNMGgiQHIKGKyvSA 796
Cdd:cd24142 13 QGNFELALKFLQRALELEPNNVEAL-ELL---GEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLG--QLSGGE--EA 84
|
90 100 110
....*....|....*....|....*....|....*..
gi 2462534726 797 RAYYERALQLVpdSKLLKENLAKLDRLEKRLQEVREK 833
Cdd:cd24142 85 LQYYEKGIEIL--EEELQALQAASAEAEEEAEELKRK 119
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
506-570 |
9.41e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 41.17 E-value: 9.41e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462534726 506 FNLGNLLKSQEKKEEAITLLKDSIKYG---PEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSS 570
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
608-693 |
1.02e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 44.87 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 608 VNLGRLYRSLGENSMAEEWYKRALQ--VAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQR--ELRLALAQVLAV 683
Cdd:COG4700 93 VRLADALLELGRYDEAIELYEEALTgiFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKssDAHLLYARALEA 172
|
90
....*....|
gi 2462534726 684 MGQTKEAEKM 693
Cdd:COG4700 173 LGDLEAAEAE 182
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
483-545 |
1.05e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 41.03 E-value: 1.05e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462534726 483 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASL 545
Cdd:pfam14559 3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
644-685 |
2.30e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 2.30e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2462534726 644 GALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMG 685
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
750-791 |
2.39e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 2.39e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2462534726 750 GNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKG 791
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
777-809 |
2.72e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 2.72e-04
10 20 30
....*....|....*....|....*....|...
gi 2462534726 777 AQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 809
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
643-680 |
3.37e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 38.94 E-value: 3.37e-04
10 20 30
....*....|....*....|....*....|....*...
gi 2462534726 643 LGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQV 680
Cdd:pfam13428 7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
437-469 |
3.72e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 38.27 E-value: 3.72e-04
10 20 30
....*....|....*....|....*....|...
gi 2462534726 437 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPR 469
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
623-836 |
3.81e-04 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 42.95 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 623 AEEWYKRALQvahkaeilsplgalYYNTGRYEEALQIYQEAAALQPSqrelrlalaqvlavmgqTKEAEKMtnhivseet 702
Cdd:COG4105 32 AEELYEEAKE--------------ALEKGDYEKAIKLFEELEPRYPG-----------------SPYAEQA--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 703 gclecyrLLSAIYS--KQENHDKALDAIDKALQLKPKDPKViSELFFTKG----NQL----REQNLLDKAFESYRVAVQL 772
Cdd:COG4105 72 -------QLMLAYAyyKQGDYEEAIAAADRFIKLYPNSPNA-DYAYYLRGlsyyEQSpdsdRDQTSTRKAIEAFQELINR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 773 NPD-----QAQAWMNMggIQ--------HI------KGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVREK 833
Cdd:COG4105 144 YPDseyaeDAKKRIDE--LRdklarkelEVaryylkRGAYVAAINRFQNVLEDYPDTPAVEEALYLLVEAYYALGRYDEA 221
|
...
gi 2462534726 834 DQT 836
Cdd:COG4105 222 QDA 224
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
444-478 |
4.14e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.61 E-value: 4.14e-04
10 20 30
....*....|....*....|....*....|....*
gi 2462534726 444 ANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG 478
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLG 35
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
519-574 |
4.31e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 39.10 E-value: 4.31e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534726 519 EEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHN 574
Cdd:pfam14559 5 AEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
455-626 |
4.46e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 43.75 E-value: 4.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 455 EAIYHYRTALkLYPRHASALNNLGTLTRDTAEAKmYYQRALQL----------------HPQHNRALFNLGNLLKSQEKK 518
Cdd:NF040586 544 REVLRRRRRV-LGPDHPRTLLSANNLARDLRELG-RYAEALDLleealeryrevlggpdHPDTLRAAKSLAVALRRAGRL 621
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 519 EEAITLLKDSI-----KYGPEFADAYS---SLASLLAEQERFKEAEEIYQTGIKNCPDSSDLH--------NNYGVFLVD 582
Cdd:NF040586 622 EEALELAEDTYeryrrRFGPDHPDTLAaalSLANDLRALGDADEARELAREVLDRYRRVLGEDhpftlacrNNLAVLLRA 701
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462534726 583 TGLPEKAVAHYQQAI-----KLSPSHH---VAMVNLGRLYRSLGENSMAEEW 626
Cdd:NF040586 702 LGDPEEARELAEAALeglreRLGPDHPytlAAAVNLANDLAALGDLDAALGE 753
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
503-602 |
8.85e-04 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 39.96 E-value: 8.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 503 RALFNLGNLLKSQEKKEEAITLLKDSIKYGPEF---ADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSS---DLHNNY 576
Cdd:TIGR02795 1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKStyaPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkapDALLKL 80
|
90 100
....*....|....*....|....*.
gi 2462534726 577 GVFLVDTGLPEKAVAHYQQAIKLSPS 602
Cdd:TIGR02795 81 GMSLQELGDKEKAKATLQQVIKRYPG 106
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
643-668 |
9.18e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.50 E-value: 9.18e-04
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
584-690 |
9.24e-04 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 40.36 E-value: 9.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 584 GLPEKAVAHYQQAIklspshhvamvnlgRLYR--SLGENSmAEEW---YKRALQvAHKAEILSPLGALYYNTGRYEEALQ 658
Cdd:smart01043 19 ADPEAALALLEAAL--------------ALYRgpLLADVP-DEDWaeaERERLR-ELRLEALEALAEALLALGRHEEALA 82
|
90 100 110
....*....|....*....|....*....|..
gi 2462534726 659 IYQEAAALQPSQRELRLALAQVLAVMGQTKEA 690
Cdd:smart01043 83 LLERLLALDPLRERLHRLLMRALYRAGRRAEA 114
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
580-634 |
9.85e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 9.85e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462534726 580 LVDTGLPEKAVAHYQQAIKL---SPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA 634
Cdd:pfam13432 7 ALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
777-809 |
1.05e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 1.05e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534726 777 AQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 809
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
508-739 |
1.21e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 41.57 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 508 LGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLA-----EQERFKEAEEIYQTGIKNCPDSSDLhnnygVFLVD 582
Cdd:pfam13429 14 LATLLYGQGDPRKALAALKEGAQTAPASDTEFWRTLADLAwalqqDDDARRAYRQLLASGKARADDYERL-----ILLLY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 583 TGLPEKAVA-------------HYQQAIKLSPSHHvAMVNLGRLYRSLGENSMAEE----WYKRAlqvahkaeilsplgA 645
Cdd:pfam13429 89 DARPKDAARlselgwrrfrsprHLYSALYLYERAG-DYDRLARLLASLEELPAAEQspafWLARA--------------E 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 646 LYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKAL 725
Cdd:pfam13429 154 YYRQTGEPDAALRDYRRALALAPASTELRAALLWFLIDLGRRAELRPALAAWRARAETDADLWGPLAAAYLRLGRPRKAL 233
|
250
....*....|....
gi 2462534726 726 DAIDKALQLKPKDP 739
Cdd:pfam13429 234 PYLRKQAASNRNDP 247
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
747-810 |
1.36e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 1.36e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462534726 747 FTKGNQLREQNLLDKAFESYRVAVQLN---PDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDS 810
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
437-470 |
1.46e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.46e-03
10 20 30
....*....|....*....|....*....|....
gi 2462534726 437 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH 470
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
752-832 |
1.47e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 752 QLREQNLLDKAFESYRVAVQLNPD---QAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQ 828
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81
|
....
gi 2462534726 829 EVRE 832
Cdd:COG1729 82 DYDK 85
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
423-473 |
1.49e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 1.49e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2462534726 423 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASA 473
Cdd:COG4235 71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
706-738 |
1.55e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.55e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534726 706 ECYRLLSAIYSKQENHDKALDAIDKALQLKPKD 738
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| FAT |
pfam02259 |
FAT domain; The FAT domain is named after FRAP, ATM and TRRAP. |
414-603 |
1.62e-03 |
|
FAT domain; The FAT domain is named after FRAP, ATM and TRRAP.
Pssm-ID: 396714 [Multi-domain] Cd Length: 342 Bit Score: 41.57 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 414 KQNEIWLSRESLFR-SGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLgtLTRDTAEAKMYYQ 492
Cdd:pfam02259 161 KSGRFSLAEKALLKlLGEDPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSG--LEVINPTNLEEFT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 493 RALqlhpqhNRALFNLGNLL------KSQEKKEEAITLLKDSIKYGPEFADAYSSLAslLAEQERFKEAEEiyqtgIKNC 566
Cdd:pfam02259 239 ELL------ARCYLLKGKWQaalgqnWAEEKSEEILQAYLLATQFDPSWYKAWHTWA--LFNFEVLRKEEQ-----GKEE 305
|
170 180 190
....*....|....*....|....*....|....*..
gi 2462534726 567 PDSSDLhnnygvflvdTGLPEKAVAHYQQAIKLSPSH 603
Cdd:pfam02259 306 EGPEDL----------SRYVVPAVEGYLRSLSLSSEN 332
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
643-669 |
1.75e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.75e-03
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
706-738 |
1.90e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.90e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534726 706 ECYRLLSAIYSKQENHDKALDAIDKALQLKPKD 738
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
592-692 |
2.00e-03 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 41.50 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 592 HYQQAIKLSPSH--HVAMVNLGRLYRSL--GENS----MAEEWYKRAlqvAHKAEILSPLGALYYNTGRYEEAlQIYQEA 663
Cdd:TIGR00540 258 DHDEAEKLIEEAlkKEWDPELLRLYGRLqpGDPSplikRAEKWLKKH---PDDALLLLALGRLCLRQQLWGKA-QSYLEA 333
|
90 100
....*....|....*....|....*....
gi 2462534726 664 AALQPSQRELRLALAQVLAVMGQTKEAEK 692
Cdd:TIGR00540 334 SLSLAPTEEAHLELAQLFEQLGDTEAAAQ 362
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
485-682 |
2.02e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 41.77 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 485 AEAKMYYQRALQLHPQHN-------------RALFNLGNLLKSQEKKEEAITLL----KDSIKYG--PEFADAYSSLASL 545
Cdd:COG3899 722 AEALRYLERALELLPPDPeeeyrlalllelaEALYLAGRFEEAEALLERALAARalaaLAALRHGnpPASARAYANLGLL 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 546 LaeQERFKEAEEIYQTGIK------NCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGE 619
Cdd:COG3899 802 L--LGDYEEAYEFGELALAlaerlgDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAA 879
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462534726 620 NSMAEEW---YKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLA 682
Cdd:COG3899 880 AAAAAALaaaAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAAL 945
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
637-669 |
2.16e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 2.16e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534726 637 AEILSPLGALYYNTGRYEEALQIYQEAAALQPS 669
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
777-809 |
2.20e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 2.20e-03
10 20 30
....*....|....*....|....*....|...
gi 2462534726 777 AQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 809
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
714-785 |
2.30e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 39.61 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 714 IYSKQENHDKALDAIDKALQLKPKDPK------VI----SELFFTKGNQLREQNLLDKAFESYRVAVQLNPD---QAQAW 780
Cdd:CHL00033 81 IHTSNGEHTKALEYYFQALERNPFLPQalnnmaVIchyrGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGnyiEAQNW 160
|
....*
gi 2462534726 781 MNMGG 785
Cdd:CHL00033 161 LKITG 165
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
451-682 |
3.02e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 41.38 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 451 GRNKEAIYHYRTALKLY-------------PRHASALNNLGTLTR-DTAEAKMYYQRALQLHPQHN------RALFNLGN 510
Cdd:COG3899 759 GRFEEAEALLERALAARalaalaalrhgnpPASARAYANLGLLLLgDYEEAYEFGELALALAERLGdrrleaRALFNLGF 838
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 511 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLA---SLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGvFLVDTGLPE 587
Cdd:COG3899 839 ILHWLGPLREALELLREALEAGLETGDAALALLalaAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAA-AAAALAAAE 917
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 588 KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQ 667
Cdd:COG3899 918 LARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAA 997
|
250
....*....|....*
gi 2462534726 668 PSQRELRLALAQVLA 682
Cdd:COG3899 998 LLALLAAAAAAAAAA 1012
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
606-634 |
3.05e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 35.98 E-value: 3.05e-03
10 20
....*....|....*....|....*....
gi 2462534726 606 AMVNLGRLYRSLGENSMAEEWYKRALQVA 634
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALA 29
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
623-680 |
3.11e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.79 E-value: 3.11e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462534726 623 AEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQV 680
Cdd:pfam14559 7 ALELLEQALAEDpDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
509-549 |
3.28e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.91 E-value: 3.28e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2462534726 509 GNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQ 549
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| Mad3_BUB1_I |
pfam08311 |
Mad3/BUB1 homology region 1; Proteins containing this domain are checkpoint proteins involved ... |
514-563 |
3.28e-03 |
|
Mad3/BUB1 homology region 1; Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Pssm-ID: 462420 Cd Length: 123 Bit Score: 38.28 E-value: 3.28e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2462534726 514 SQEKKEEAITLLKDSIkyGPEFADAYSSLASLLAEQERFKEAEEIYQTGI 563
Cdd:pfam08311 76 CDDPRDIFQFLYSNGI--GTKLALFYEEWAELLERQGRFKEADEIYQLGI 123
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
486-755 |
3.37e-03 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 40.26 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 486 EAKMYYQRALQLHPQHN------RALFNLGNLLKSqEKKEEAITLLKDSIkygpefadaysslaSLLAEQERF------- 552
Cdd:cd15832 50 EAGDAFLKAAECQLKLDskhdaaNAYVEAAKCYKK-VDPQEAVNCLEKAI--------------EIYTEMGRFrqaakhl 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 553 KEAEEIYQTgikncpdssdlhnnygvflvDTGLPEKAVAHYQQAiklspshhvamvnlGRLYRSLGENSMAEEWYKRAlq 632
Cdd:cd15832 115 KEIAELYEN--------------------ELGDLDKAIEAYEQA--------------ADYYEGEGANSLANKCYLKV-- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 633 vahkAEILSPLgalyyntGRYEEALQIYQEAAA-------LQPSQRE-------LRLALAQVLAVmgqTKEAEKMTN--- 695
Cdd:cd15832 159 ----ADLAAQL-------EDYDKAIEIYEQVARsslennlLKYSAKDyflkaglCHLAAGDVVAA---QRALEKYAEldp 224
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462534726 696 -HIVSEEtgclecYRLLSAIYSKQENHDkaLDAIDKALqlkpKDPKVISELFFTKGNQLRE 755
Cdd:cd15832 225 sFAGSRE------CKLLEDLLEAVEEGD--VEAFTDAV----KEYDSISKLDKWKTTMLLK 273
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
584-667 |
3.89e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 41.00 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 584 GLPEKAVAHYQQAiklspshhvamvnlGRLYRSLGENSMAEEWYKRAL-------QVAHKAEILSPLGALYYNTGRYEEA 656
Cdd:COG3899 699 GERDRAARLLLRA--------------ARRALARGAYAEALRYLERALellppdpEEEYRLALLLELAEALYLAGRFEEA 764
|
90
....*....|.
gi 2462534726 657 LQIYQEAAALQ 667
Cdd:COG3899 765 EALLERALAAR 775
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
611-651 |
3.91e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.91 E-value: 3.91e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2462534726 611 GRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTG 651
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDnPEAYYNLGLAYYKLG 42
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
610-829 |
3.95e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 40.28 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 610 LGRLYRSLGEnsMAEEWYKRALQVAHKAEILSPLGALYY--------NTGRYEEALQIYQEAAALQPSQRELR-LALAQV 680
Cdd:COG3071 17 LAALLEGLLA--LAEGRYARAEKLLSKAAEHSEAPLLAYllaaraaqALGDYERRDEYLAQALELAPEAELAVlLTRAEL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 681 LAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELFFTKGNQL-----RE 755
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRAYLGLlrqaaRD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 756 QNLLDKAFESYRVAVQLNPD----QAQAWMNMGgiqhikgKYVSARAYYERALQLVPDSKLL--------KENLAKLDRL 823
Cdd:COG3071 175 AEALKALWKALPRAERRDPElaaaYARALIALG-------DHDEAERLLREALKRQWDPRLVrlygrlqgGDPAKQLKRA 247
|
....*.
gi 2462534726 824 EKRLQE 829
Cdd:COG3071 248 EKWLKK 253
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
531-691 |
4.05e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 40.03 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 531 YGPEFADAYSSLASLLAEQERFKEAEeiyqtgikncpDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNL 610
Cdd:pfam13429 117 YLYERAGDYDRLARLLASLEELPAAE-----------QSPAFWLARAEYYRQTGEPDAALRDYRRALALAPASTELRAAL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 611 GRLYRSLGENsmAEewyKRALQVAHKAEILS------PLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVM 684
Cdd:pfam13429 186 LWFLIDLGRR--AE---LRPALAAWRARAETdadlwgPLAAAYLRLGRPRKALPYLRKQAASNRNDPLWLLAYADALEQA 260
|
....*..
gi 2462534726 685 GQTKEAE 691
Cdd:pfam13429 261 GRADAAW 267
|
|
| TPR-S |
pfam20308 |
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ... |
486-610 |
5.07e-03 |
|
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.
Pssm-ID: 466458 [Multi-domain] Cd Length: 105 Bit Score: 37.25 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462534726 486 EAKMYYQRALQLhPQHNRALFNLGNLL-KSQEKKEEAITLLKDSIKYGPEFADAYSSLASllAEQERFKEAEEiyqtgik 564
Cdd:pfam20308 4 AAVELLEALLAL-PEDARAQEQLALALaRLPGDRDEALDVLEDLIERLGEDPETLGLLGR--IYKRLWLESAE------- 73
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462534726 565 ncpDSSDLhnnygvflvdtglpEKAVAHYQQAIKLSPSHHvAMVNL 610
Cdd:pfam20308 74 ---DREAL--------------DQAIEAYRKAFELDPDDY-PGINA 101
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
606-637 |
5.36e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.56 E-value: 5.36e-03
10 20 30
....*....|....*....|....*....|..
gi 2462534726 606 AMVNLGRLYRSLGENSMAEEWYKRALQVAHKA 637
Cdd:pfam13374 4 SLNNLANALRAQGRYDEAEELLEEALAIRERV 35
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
706-737 |
7.39e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 7.39e-03
10 20 30
....*....|....*....|....*....|..
gi 2462534726 706 ECYRLLSAIYSKQENHDKALDAIDKALQLKPK 737
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
637-667 |
9.12e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 34.79 E-value: 9.12e-03
10 20 30
....*....|....*....|....*....|.
gi 2462534726 637 AEILSPLGALYYNTGRYEEALQIYQEAAALQ 667
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIR 32
|
|
| |
