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Conserved domains on  [gi|2462518933|ref|XP_054221713|]
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MAM and LDL-receptor class A domain-containing protein 1 isoform X5 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
885-1041 2.16e-48

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 170.25  E-value: 2.16e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  885 CNFETGICNWEQDAKDDFDWTRSQGPTPTLNTGPmkDNTLGTAKGHYLYIESSEPQaFQDSAALLSPILNATDTKGCtFR 964
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPPRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462518933  965 FYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISS-RQPFQILVEASVGDGFTGDIAIDDLSFMD 1041
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1327-1481 9.63e-41

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 148.29  E-value: 9.63e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1327 CDFEFDLCSWKQEKDEDFDWNLKASSIPAAGTEPaaDHTLGNSSGHYIFINSLFPqQPMRAARISSPVIS-KRSKNCkII 1405
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSG-REGQKARLLSPLLPpPRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462518933 1406 FHYHMYGNGIGALTLMQVSVTNQTKVLL-NLTAEQGNFWRREELSLFG-DEDFQLKFEGRVGKGQRGDIALDDIVLTE 1481
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGGGLGTLLwSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1110-1273 1.08e-38

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 142.13  E-value: 1.08e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1110 CSFEKrSLCKWYQpipvhllQDSNTFRWGLGNGISIHHGeenhrPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIIS 1189
Cdd:cd06263      1 CDFED-GLCGWTQ-------DSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLP 67
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1190 LT-GPKCtLVFWTHMNGATVGSLQVLIKKDN--VTSKLWAQTGQQGAQWKRAEVFLG-IRSHTQIVFRAKRGISYIGDVA 1265
Cdd:cd06263     68 PPrSSHC-LSFWYHMYGSGVGTLNVYVREEGggLGTLLWSASGGQGNQWQEAEVTLSaSSKPFQVVFEGVRGSGSRGDIA 146

                   ....*...
gi 2462518933 1266 VDDISFQD 1273
Cdd:cd06263    147 LDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1749-1910 8.55e-37

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 136.74  E-value: 8.55e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1749 CNFETSsgnwttACSLTQDSEDDLDWAIGSRIPAKALIPDSDHTPGSGQHFLYVNSSGSKEGSVARITTSKSFPASLGMC 1828
Cdd:cd06263      1 CDFEDG------LCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPRSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1829 tVRFWFYMIDpRSMGILKVYTIEESG-LNILVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDISF 1906
Cdd:cd06263     75 -LSFWYHMYG-SGVGTLNVYVREEGGgLGTLLWSASGGQGNQWQEAEVTLSASSkPFQVVFEGVRGSGSRGDIALDDISL 152

                   ....*
gi 2462518933 1907 TP-EC 1910
Cdd:cd06263    153 SPgPC 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
674-833 1.55e-35

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 133.27  E-value: 1.55e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  674 CDFEANSCDWfEAISGDHFDWIRSSQSELSADfehqaPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQT-GPGC 752
Cdd:cd06263      1 CDFEDGLCGW-TQDSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPrSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  753 iLSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRFE 832
Cdd:cd06263     75 -LSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGSRGDIALDDISLS 153

                   .
gi 2462518933  833 N 833
Cdd:cd06263    154 P 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1541-1693 8.75e-35

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 130.96  E-value: 8.75e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1541 CTFEKGWCGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGNENGHFMYLEATAvGLRGDKAHFRS-TMWRESSAACtMSFW 1619
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSS-GREGQKARLLSpLLPPPRSSHC-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462518933 1620 YFISAKATGSIQILIKTEKG--LSKVWQESkQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEFKN 1693
Cdd:cd06263     79 YHMYGSGVGTLNVYVREEGGglGTLLWSAS-GGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
93-246 3.28e-26

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 106.69  E-value: 3.28e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   93 CDFEDGLCHMTQDQSLQPSWTKRSGMIGLS-PPFYDHNGDVSAHFLSLVSRVDSISSS--LRSRVFLPTNDQHdCqITFY 169
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPgTPPDHTHGTGSGHYLYVESSSGREGQKarLLSPLLPPPRSSH-C-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462518933  170 YF-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQS-SQRFQVVFEGQMASTYEQDevIAIDDISFSSG 246
Cdd:cd06263     79 YHmYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGD--IALDDISLSPG 155
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
496-652 4.51e-24

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 100.53  E-value: 4.51e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  496 CDFESGFCGWEPFLTEDSHWKLMKGLNNgeHHFPAADHTANINHGSFIYLEA-QRSPG-VAKLGSPVLTklLTASTPCqV 573
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTP--SPGTPPDHTHGTGSGHYLYVESsSGREGqKARLLSPLLP--PPRSSHC-L 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  574 QFWYHLS--QHSNLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLiaeaGESTLPFQLILEATVLSSNA-TVALDDIS 650
Cdd:cd06263     76 SFWYHMYgsGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTL----SASSKPFQVVFEGVRGSGSRgDIALDDIS 151

                   ..
gi 2462518933  651 VS 652
Cdd:cd06263    152 LS 153
MAM super family cl46915
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
290-438 7.72e-14

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


The actual alignment was detected with superfamily member cd06263:

Pssm-ID: 99706  Cd Length: 157  Bit Score: 71.25  E-value: 7.72e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  290 CGFEFDMCEWTSEASAGqISWMRTKAREIPafESTPQQDQGGDDEGYYVWVGAKHGftlnHLDSRAYLNSSVCH-CLGKS 368
Cdd:cd06263      1 CDFEDGLCGWTQDSTDD-FDWTRVSGSTPS--PGTPPDHTHGTGSGHYLYVESSSG----REGQKARLLSPLLPpPRSSH 73
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462518933  369 ChLQFYYAMESS---VLRV--RLYNNKEEEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 438
Cdd:cd06263     74 C-LSFWYHMYGSgvgTLNVyvREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSgSRGDIALD 148
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1283-1315 1.10e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 1.10e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 2462518933  1283 KCTAHEFMCANKHCVAKDKLCDFVNDCADNSDE 1315
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1070-1105 6.93e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.28  E-value: 6.93e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1070 CTDNEFICRsDGHCIEKMQKCDFKYDCPDKSDEASC 1105
Cdd:cd00112      1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
454-485 7.97e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.94  E-value: 7.97e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 2462518933   454 CSADEFPCTSGQCIAKESVCDSRQDCSDESDE 485
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1704-1739 1.90e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.74  E-value: 1.90e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1704 CPEiTDFLCRDKKCIASHLLCDYKPDCSDRSDEAHC 1739
Cdd:cd00112      1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1923-1958 7.35e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.20  E-value: 7.35e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1923 CEADQFSCiYTLQCVPLSGKCDGHEDCIDGSDEMDC 1958
Cdd:cd00112      1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1967-2001 7.35e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.20  E-value: 7.35e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2462518933 1967 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDELIC 2001
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1503-1537 5.66e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 41.81  E-value: 5.66e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2462518933 1503 CPLGYRECHNGKCYRLEQSCNFVDNCGDNTDENEC 1537
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
58-87 2.55e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.27  E-value: 2.55e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 2462518933   58 FQCDNGVSLPPDSICDFTDQCGDSSDERHC 87
Cdd:cd00112      6 FRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
847-879 1.26e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 37.96  E-value: 1.26e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2462518933  847 DHFWCRHTRaCIEKLRLCDLVDDCGDRTDEVNC 879
Cdd:cd00112      4 NEFRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
 
Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
885-1041 2.16e-48

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 170.25  E-value: 2.16e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  885 CNFETGICNWEQDAKDDFDWTRSQGPTPTLNTGPmkDNTLGTAKGHYLYIESSEPQaFQDSAALLSPILNATDTKGCtFR 964
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPPRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462518933  965 FYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISS-RQPFQILVEASVGDGFTGDIAIDDLSFMD 1041
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
885-1042 2.91e-48

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 169.85  E-value: 2.91e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  885 CNFETG-ICNWEQDAKDDFDWTRSQGPTPtlNTGPMKDNTLGTAKGHYLYIESSEPQAFQdSAALLSPILNATDTKGCtF 963
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPSV--KTGPSSDHTQGTGSGHFMYVDTSSGAPGQ-TARLLSPLLPPSRSPQC-L 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  964 RFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISSR-QPFQILVEASVGDGFTGDIAIDDLSFM-- 1040
Cdd:pfam00629   77 RFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSStQPFQVVFEGIRGGGSRGGIALDDISLSsg 156

                   ..
gi 2462518933 1041 DC 1042
Cdd:pfam00629  157 PC 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1327-1481 9.63e-41

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 148.29  E-value: 9.63e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1327 CDFEFDLCSWKQEKDEDFDWNLKASSIPAAGTEPaaDHTLGNSSGHYIFINSLFPqQPMRAARISSPVIS-KRSKNCkII 1405
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSG-REGQKARLLSPLLPpPRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462518933 1406 FHYHMYGNGIGALTLMQVSVTNQTKVLL-NLTAEQGNFWRREELSLFG-DEDFQLKFEGRVGKGQRGDIALDDIVLTE 1481
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGGGLGTLLwSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1110-1273 1.08e-38

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 142.13  E-value: 1.08e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1110 CSFEKrSLCKWYQpipvhllQDSNTFRWGLGNGISIHHGeenhrPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIIS 1189
Cdd:cd06263      1 CDFED-GLCGWTQ-------DSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLP 67
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1190 LT-GPKCtLVFWTHMNGATVGSLQVLIKKDN--VTSKLWAQTGQQGAQWKRAEVFLG-IRSHTQIVFRAKRGISYIGDVA 1265
Cdd:cd06263     68 PPrSSHC-LSFWYHMYGSGVGTLNVYVREEGggLGTLLWSASGGQGNQWQEAEVTLSaSSKPFQVVFEGVRGSGSRGDIA 146

                   ....*...
gi 2462518933 1266 VDDISFQD 1273
Cdd:cd06263    147 LDDISLSP 154
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
880-1041 1.72e-38

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 141.71  E-value: 1.72e-38
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   880 APELQCNFETG-ICNWEQDAKDDFDWTRSQGPTPtlNTGPMKDNTLGTakGHYLYIESSEPQAFQdSAALLSPILNATDT 958
Cdd:smart00137    1 TSPGNCDFEEGsTCGWHQDSNDDGHWERVSSATG--IPGPNRDHTTGN--GHFMFFETSSGAEGQ-TARLLSPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   959 KGCtFRFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISS-RQPFQILVEASVGDGFTGDIAIDDL 1037
Cdd:smart00137   76 THC-LTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSwPQPFQVVFEGTRGKGHSGYIALDDI 154

                    ....
gi 2462518933  1038 SFMD 1041
Cdd:smart00137  155 LLSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1749-1910 8.55e-37

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 136.74  E-value: 8.55e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1749 CNFETSsgnwttACSLTQDSEDDLDWAIGSRIPAKALIPDSDHTPGSGQHFLYVNSSGSKEGSVARITTSKSFPASLGMC 1828
Cdd:cd06263      1 CDFEDG------LCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPRSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1829 tVRFWFYMIDpRSMGILKVYTIEESG-LNILVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDISF 1906
Cdd:cd06263     75 -LSFWYHMYG-SGVGTLNVYVREEGGgLGTLLWSASGGQGNQWQEAEVTLSASSkPFQVVFEGVRGSGSRGDIALDDISL 152

                   ....*
gi 2462518933 1907 TP-EC 1910
Cdd:cd06263    153 SPgPC 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
674-833 1.55e-35

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 133.27  E-value: 1.55e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  674 CDFEANSCDWfEAISGDHFDWIRSSQSELSADfehqaPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQT-GPGC 752
Cdd:cd06263      1 CDFEDGLCGW-TQDSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPrSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  753 iLSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRFE 832
Cdd:cd06263     75 -LSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGSRGDIALDDISLS 153

                   .
gi 2462518933  833 N 833
Cdd:cd06263    154 P 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1749-1909 1.87e-35

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 133.26  E-value: 1.87e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1749 CNFETSSgnwttACSLTQDSEDDLDWAIGSRIPAKAlIPDSDHTPGSGQ-HFLYVNSSGSKEGSVARITtSKSFPASLGM 1827
Cdd:pfam00629    1 CDFEDGN-----LCGWTQDSSDDFDWERVSGPSVKT-GPSSDHTQGTGSgHFMYVDTSSGAPGQTARLL-SPLLPPSRSP 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1828 CTVRFWFYMIDPrSMGILKVYTIEESG-LNILVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDIS 1905
Cdd:pfam00629   74 QCLRFWYHMSGS-GVGTLRVYVRENGGtLDTLLWSISGDQGPSWKEARVTLSSSTqPFQVVFEGIRGGGSRGGIALDDIS 152

                   ....
gi 2462518933 1906 FTPE 1909
Cdd:pfam00629  153 LSSG 156
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
674-834 1.89e-35

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 133.26  E-value: 1.89e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  674 CDFE-ANSCDWFEAISgDHFDWIRSSqselsADFEHQAPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQTGPGC 752
Cdd:pfam00629    1 CDFEdGNLCGWTQDSS-DDFDWERVS-----GPSVKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLPPSRSPQ 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  753 ILSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRF- 831
Cdd:pfam00629   75 CLRFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGGSRGGIALDDISLs 154

                   ....
gi 2462518933  832 -ENC 834
Cdd:pfam00629  155 sGPC 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1541-1693 8.75e-35

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 130.96  E-value: 8.75e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1541 CTFEKGWCGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGNENGHFMYLEATAvGLRGDKAHFRS-TMWRESSAACtMSFW 1619
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSS-GREGQKARLLSpLLPPPRSSHC-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462518933 1620 YFISAKATGSIQILIKTEKG--LSKVWQESkQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEFKN 1693
Cdd:cd06263     79 YHMYGSGVGTLNVYVREEGGglGTLLWSAS-GGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1110-1275 1.31e-34

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 130.56  E-value: 1.31e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1110 CSFEKRSLCKWYQPIPVHllqdsntFRWGLGNGISIHHGeenhrPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIIS 1189
Cdd:pfam00629    1 CDFEDGNLCGWTQDSSDD-------FDWERVSGPSVKTG-----PSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLP 68
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1190 LTGPKCTLVFWTHMNGATVGSLQVLIKKDNVT--SKLWAQTGQQGAQWKRAEVFLGIRSH-TQIVFRAKRGISYIGDVAV 1266
Cdd:pfam00629   69 PSRSPQCLRFWYHMSGSGVGTLRVYVRENGGTldTLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGGIAL 148
                          170
                   ....*....|.
gi 2462518933 1267 DDISFQ--DCS 1275
Cdd:pfam00629  149 DDISLSsgPCP 159
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1541-1691 1.06e-32

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 125.17  E-value: 1.06e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1541 CTFEKGW-CGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGNENGHFMYLEATAvGLRGDKAHFRS-TMWRESSAACtMSF 1618
Cdd:pfam00629    1 CDFEDGNlCGWTQDSSDDFDWERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSS-GAPGQTARLLSpLLPPSRSPQC-LRF 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462518933 1619 WYFISAKATGSIQILIKTEKG--LSKVWQeSKQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEF 1691
Cdd:pfam00629   79 WYHMSGSGVGTLRVYVRENGGtlDTLLWS-ISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGGIALDDISL 153
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1327-1483 4.22e-32

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 123.63  E-value: 4.22e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1327 CDFEFD-LCSWKQEKDEDFDWnlKASSIPAAGTEPAADHTLGNSSGHYIFINSLFPQqPMRAARISSPVISKRSKNCKII 1405
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDW--ERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSSGA-PGQTARLLSPLLPPSRSPQCLR 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1406 FHYHMYGNGIGALTL-MQVSVTNQTKVLLNLTAEQGNFWRREELSL-FGDEDFQLKFEGRVGKGQRGDIALDDIVLTE-N 1482
Cdd:pfam00629   78 FWYHMSGSGVGTLRVyVRENGGTLDTLLWSISGDQGPSWKEARVTLsSSTQPFQVVFEGIRGGGSRGGIALDDISLSSgP 157

                   .
gi 2462518933 1483 C 1483
Cdd:pfam00629  158 C 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1322-1481 3.89e-31

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 120.91  E-value: 3.89e-31
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1322 TSSGRCDFEFD-LCSWKQEKDEDFDWnlKASSIPAAGTEPAADHTLGNssGHYIFINSLFPQQPMRAARISSPVISKRSK 1400
Cdd:smart00137    1 TSPGNCDFEEGsTCGWHQDSNDDGHW--ERVSSATGIPGPNRDHTTGN--GHFMFFETSSGAEGQTARLLSPPLYENRST 76
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1401 NCkIIFHYHMYGNGIGALTL-MQVSVTNQTKVLLNLTAEQGNFWRREELSLFG-DEDFQLKFEGRVGKGQRGDIALDDIV 1478
Cdd:smart00137   77 HC-LTFWYYMYGSGSGTLNVyVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSwPQPFQVVFEGTRGKGHSGYIALDDIL 155

                    ...
gi 2462518933  1479 LTE 1481
Cdd:smart00137  156 LSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1110-1273 1.33e-26

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 107.81  E-value: 1.33e-26
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1110 CSFEKRSLCKWyqpipVHLLQDSNTFRWGLGNgisihhgEENHRPSVDHTQNttDGWYLYADSSNGKFGDTADILTPIIS 1189
Cdd:smart00137    6 CDFEEGSTCGW-----HQDSNDDGHWERVSSA-------TGIPGPNRDHTTG--NGHFMFFETSSGAEGQTARLLSPPLY 71
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1190 LTGPKCTLVFWTHMNGATVGSLQVLIKKDN--VTSKLWAQTGQQGAQWKRAEVFLGIRSHT-QIVFRAKRGISYIGDVAV 1266
Cdd:smart00137   72 ENRSTHCLTFWYYMYGSGSGTLNVYVRENNgsQDTLLWSRSGTQGGQWLQAEVALSSWPQPfQVVFEGTRGKGHSGYIAL 151

                    ....*..
gi 2462518933  1267 DDISFQD 1273
Cdd:smart00137  152 DDILLSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
93-246 3.28e-26

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 106.69  E-value: 3.28e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   93 CDFEDGLCHMTQDQSLQPSWTKRSGMIGLS-PPFYDHNGDVSAHFLSLVSRVDSISSS--LRSRVFLPTNDQHdCqITFY 169
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPgTPPDHTHGTGSGHYLYVESSSGREGQKarLLSPLLPPPRSSH-C-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462518933  170 YF-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQS-SQRFQVVFEGQMASTYEQDevIAIDDISFSSG 246
Cdd:cd06263     79 YHmYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGD--IALDDISLSPG 155
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1747-1908 1.48e-25

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 104.73  E-value: 1.48e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1747 GSCNFEtssgnWTTACSLTQDSEDDLDWAIGSRIPAKALiPDSDHTPGSGqHFLYVNSSGSKEGSVARITtSKSFPASLG 1826
Cdd:smart00137    4 GNCDFE-----EGSTCGWHQDSNDDGHWERVSSATGIPG-PNRDHTTGNG-HFMFFETSSGAEGQTARLL-SPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1827 MCTVRFWFYMIDPRSmGILKVYTIEESGLNI-LVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDI 1904
Cdd:smart00137   76 THCLTFWYYMYGSGS-GTLNVYVRENNGSQDtLLWSRSGTQGGQWLQAEVALSSWPqPFQVVFEGTRGKGHSGYIALDDI 154

                    ....
gi 2462518933  1905 SFTP 1908
Cdd:smart00137  155 LLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1540-1693 2.15e-25

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 104.35  E-value: 2.15e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1540 SCTFEKGW-CGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGneNGHFMYLEATaVGLRGDKAHFRSTMWRESSAACTMSF 1618
Cdd:smart00137    5 NCDFEEGStCGWHQDSNDDGHWERVSSATGIPGPNRDHTTG--NGHFMFFETS-SGAEGQTARLLSPPLYENRSTHCLTF 81
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462518933  1619 WYFISAKATGSIQILIKTEKG--LSKVWqESKQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEFKN 1693
Cdd:smart00137   82 WYYMYGSGSGTLNVYVRENNGsqDTLLW-SRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHSGYIALDDILLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
674-833 3.52e-24

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 100.88  E-value: 3.52e-24
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   674 CDFE-ANSCDWfEAISGDHFDWIRSSQSELSAdfehqAPPRDHSLNasQGHFMFILKKSSSLWQVAKLQSPTFSQTGPGC 752
Cdd:smart00137    6 CDFEeGSTCGW-HQDSNDDGHWERVSSATGIP-----GPNRDHTTG--NGHFMFFETSSGAEGQTARLLSPPLYENRSTH 77
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   753 ILSFWFYNYGLSVGAaeLQLHMENSHDS--TVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIR 830
Cdd:smart00137   78 CLTFWYYMYGSGSGT--LNVYVRENNGSqdTLLWSRSGTQGGQWLQAEVALSSWPQPFQVVFEGTRGKGHSGYIALDDIL 155

                    ...
gi 2462518933   831 FEN 833
Cdd:smart00137  156 LSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
496-652 4.51e-24

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 100.53  E-value: 4.51e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  496 CDFESGFCGWEPFLTEDSHWKLMKGLNNgeHHFPAADHTANINHGSFIYLEA-QRSPG-VAKLGSPVLTklLTASTPCqV 573
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTP--SPGTPPDHTHGTGSGHYLYVESsSGREGqKARLLSPLLP--PPRSSHC-L 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  574 QFWYHLS--QHSNLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLiaeaGESTLPFQLILEATVLSSNA-TVALDDIS 650
Cdd:cd06263     76 SFWYHMYgsGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTL----SASSKPFQVVFEGVRGSGSRgDIALDDIS 151

                   ..
gi 2462518933  651 VS 652
Cdd:cd06263    152 LS 153
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
496-654 6.57e-23

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 97.05  E-value: 6.57e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  496 CDFESG-FCGWEPFLTEDSHWKLMKGLNngEHHFPAADHTANINHGSFIYLEAQRSPG--VAKLGSPVLTklLTASTPCq 572
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPS--VKTGPSSDHTQGTGSGHFMYVDTSSGAPgqTARLLSPLLP--PSRSPQC- 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  573 VQFWYHLSQHS--NLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLiaeaGESTLPFQLILEATVLSSNA-TVALDDI 649
Cdd:pfam00629   76 LRFWYHMSGSGvgTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTL----SSSTQPFQVVFEGIRGGGSRgGIALDDI 151

                   ....*
gi 2462518933  650 SVSQE 654
Cdd:pfam00629  152 SLSSG 156
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
93-246 6.90e-20

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 88.57  E-value: 6.90e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   93 CDFEDG-LCHMTQDQSLQPSWTKRSGMIGLSPPFYDHNGDVSA-HFLSLVSRVDSISSS--LRSRVFLPTNDQHdCqITF 168
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPSVKTGPSSDHTQGTGSgHFMYVDTSSGAPGQTarLLSPLLPPSRSPQ-C-LRF 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  169 YYF-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQSSQR-FQVVFEGQMASTYEQDevIAIDDISFSSG 246
Cdd:pfam00629   79 WYHmSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGG--IALDDISLSSG 156
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
494-652 7.41e-19

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 85.47  E-value: 7.41e-19
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   494 LTCDFESG-FCGWEPFLTEDSHWKLMKGLNNGEHhfPAADHTanINHGSFIYLEAQ-RSPG-VAKLGSPVLTklLTASTP 570
Cdd:smart00137    4 GNCDFEEGsTCGWHQDSNDDGHWERVSSATGIPG--PNRDHT--TGNGHFMFFETSsGAEGqTARLLSPPLY--ENRSTH 77
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   571 CqVQFWYHL--SQHSNLSVFTRtslDGNLQKQGKIIRFSE---SQWSHAKIDLIAEAGestlPFQLILEATVLSSNA-TV 644
Cdd:smart00137   78 C-LTFWYYMygSGSGTLNVYVR---ENNGSQDTLLWSRSGtqgGQWLQAEVALSSWPQ----PFQVVFEGTRGKGHSgYI 149

                    ....*...
gi 2462518933   645 ALDDISVS 652
Cdd:smart00137  150 ALDDILLS 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
290-438 7.72e-14

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 71.25  E-value: 7.72e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  290 CGFEFDMCEWTSEASAGqISWMRTKAREIPafESTPQQDQGGDDEGYYVWVGAKHGftlnHLDSRAYLNSSVCH-CLGKS 368
Cdd:cd06263      1 CDFEDGLCGWTQDSTDD-FDWTRVSGSTPS--PGTPPDHTHGTGSGHYLYVESSSG----REGQKARLLSPLLPpPRSSH 73
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462518933  369 ChLQFYYAMESS---VLRV--RLYNNKEEEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 438
Cdd:cd06263     74 C-LSFWYHMYGSgvgTLNVyvREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSgSRGDIALD 148
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
93-246 3.57e-12

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 66.21  E-value: 3.57e-12
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933    93 CDFEDG-LCHMTQDQSLQPSWTKRSGMIGLSPPFYDH-NGDVSAHFLSLVSRVDSISSSLRSRVFLPTNDQHdCqITFYY 170
Cdd:smart00137    6 CDFEEGsTCGWHQDSNDDGHWERVSSATGIPGPNRDHtTGNGHFMFFETSSGAEGQTARLLSPPLYENRSTH-C-LTFWY 83
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462518933   171 F-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQSSQR-FQVVFEGQMASTYEQDevIAIDDISFSSG 246
Cdd:smart00137   84 YmYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHSGY--IALDDILLSNG 159
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
290-438 1.08e-09

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 59.28  E-value: 1.08e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   290 CGFEFD-MCEWtSEASAGQISWMRTKAREipaFESTPQQDQGGDDeGYYVWVGA---KHGftlnhldSRAYLNSSVCHCL 365
Cdd:smart00137    6 CDFEEGsTCGW-HQDSNDDGHWERVSSAT---GIPGPNRDHTTGN-GHFMFFETssgAEG-------QTARLLSPPLYEN 73
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462518933   366 GKSCHLQFYYAM---ESSVLRVRLYNNKEEEIFWTYNISTH--SQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 438
Cdd:smart00137   74 RSTHCLTFWYYMygsGSGTLNVYVRENNGSQDTLLWSRSGTqgGQWLQAEVALSSWPQPFQVVFEGTRGKgHSGYIALD 152
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
290-438 2.85e-09

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 58.14  E-value: 2.85e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  290 CGFEFD-MCEWTSEASAGqISWMRTKAREIPafeSTPQQD-QGGDDEGYYVWVGAKHGftlnHLDSRAYLNSSVCHCLGK 367
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDD-FDWERVSGPSVK---TGPSSDhTQGTGSGHFMYVDTSSG----APGQTARLLSPLLPPSRS 72
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462518933  368 SCHLQFYYAMESS-----VLRVRLYNNKEEEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 438
Cdd:pfam00629   73 PQCLRFWYHMSGSgvgtlRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGgSRGGIALD 149
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1283-1315 1.10e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 1.10e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 2462518933  1283 KCTAHEFMCANKHCVAKDKLCDFVNDCADNSDE 1315
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1284-1315 1.92e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 51.82  E-value: 1.92e-08
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2462518933 1284 CTAHEFMCANKHCVAKDKLCDFVNDCADNSDE 1315
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1070-1105 6.93e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.28  E-value: 6.93e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1070 CTDNEFICRsDGHCIEKMQKCDFKYDCPDKSDEASC 1105
Cdd:cd00112      1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
454-485 7.97e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.94  E-value: 7.97e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 2462518933   454 CSADEFPCTSGQCIAKESVCDSRQDCSDESDE 485
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
454-486 1.49e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 1.49e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2462518933  454 CSADEFPCTSGQCIAKESVCDSRQDCSDESDED 486
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1704-1739 1.90e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.74  E-value: 1.90e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1704 CPEiTDFLCRDKKCIASHLLCDYKPDCSDRSDEAHC 1739
Cdd:cd00112      1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1923-1958 7.35e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.20  E-value: 7.35e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1923 CEADQFSCiYTLQCVPLSGKCDGHEDCIDGSDEMDC 1958
Cdd:cd00112      1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1967-2001 7.35e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.20  E-value: 7.35e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2462518933 1967 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDELIC 2001
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1967-1998 2.90e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 45.70  E-value: 2.90e-06
                            10        20        30
                    ....*....|....*....|....*....|..
gi 2462518933  1967 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDE 1998
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1070-1102 7.01e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.55  E-value: 7.01e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 2462518933  1070 CTDNEFICRsDGHCIEKMQKCDFKYDCPDKSDE 1102
Cdd:smart00192    2 CPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
454-485 9.06e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.16  E-value: 9.06e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2462518933  454 CSADEFPCTSGQCIAKESVCDSRQDCSDESDE 485
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1704-1736 1.04e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 43.78  E-value: 1.04e-05
                            10        20        30
                    ....*....|....*....|....*....|...
gi 2462518933  1704 CPEiTDFLCRDKKCIASHLLCDYKPDCSDRSDE 1736
Cdd:smart00192    2 CPP-GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1921-1958 1.80e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 43.39  E-value: 1.80e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 2462518933 1921 SPCEADQFSCIYTlQCVPLSGKCDGHEDCIDGSDEMDC 1958
Cdd:pfam00057    1 STCSPNEFQCGSG-ECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1706-1739 2.89e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 42.62  E-value: 2.89e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2462518933 1706 EITDFLCRDKKCIASHLLCDYKPDCSDRSDEAHC 1739
Cdd:pfam00057    4 SPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1503-1537 5.66e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 41.81  E-value: 5.66e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2462518933 1503 CPLGYRECHNGKCYRLEQSCNFVDNCGDNTDENEC 1537
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1967-2001 9.47e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 41.47  E-value: 9.47e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2462518933 1967 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDELIC 2001
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1923-1955 1.08e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.08  E-value: 1.08e-04
                            10        20        30
                    ....*....|....*....|....*....|...
gi 2462518933  1923 CEADQFSCIYTlQCVPLSGKCDGHEDCIDGSDE 1955
Cdd:smart00192    2 CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
58-87 2.55e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.27  E-value: 2.55e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 2462518933   58 FQCDNGVSLPPDSICDFTDQCGDSSDERHC 87
Cdd:cd00112      6 FRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1282-1315 6.83e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 38.77  E-value: 6.83e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2462518933 1282 RKCTAHEFMCANKHCVAKDKLCDFVNDCADNSDE 1315
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
847-879 1.26e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 37.96  E-value: 1.26e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2462518933  847 DHFWCRHTRaCIEKLRLCDLVDDCGDRTDEVNC 879
Cdd:cd00112      4 NEFRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1503-1534 1.39e-03

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 38.00  E-value: 1.39e-03
                            10        20        30
                    ....*....|....*....|....*....|..
gi 2462518933  1503 CPLGYRECHNGKCYRLEQSCNFVDNCGDNTDE 1534
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1070-1105 4.94e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 36.46  E-value: 4.94e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1070 CTDNEFICRSdGHCIEKMQKCDFKYDCPDKSDEASC 1105
Cdd:pfam00057    3 CSPNEFQCGS-GECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
58-84 6.28e-03

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 36.07  E-value: 6.28e-03
                            10        20
                    ....*....|....*....|....*..
gi 2462518933    58 FQCDNGVSLPPDSICDFTDQCGDSSDE 84
Cdd:smart00192    7 FQCDNGRCIPSSWVCDGVDDCGDGSDE 33
 
Name Accession Description Interval E-value
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
885-1041 2.16e-48

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 170.25  E-value: 2.16e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  885 CNFETGICNWEQDAKDDFDWTRSQGPTPTLNTGPmkDNTLGTAKGHYLYIESSEPQaFQDSAALLSPILNATDTKGCtFR 964
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPPRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462518933  965 FYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISS-RQPFQILVEASVGDGFTGDIAIDDLSFMD 1041
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
885-1042 2.91e-48

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 169.85  E-value: 2.91e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  885 CNFETG-ICNWEQDAKDDFDWTRSQGPTPtlNTGPMKDNTLGTAKGHYLYIESSEPQAFQdSAALLSPILNATDTKGCtF 963
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPSV--KTGPSSDHTQGTGSGHFMYVDTSSGAPGQ-TARLLSPLLPPSRSPQC-L 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  964 RFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISSR-QPFQILVEASVGDGFTGDIAIDDLSFM-- 1040
Cdd:pfam00629   77 RFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSStQPFQVVFEGIRGGGSRGGIALDDISLSsg 156

                   ..
gi 2462518933 1041 DC 1042
Cdd:pfam00629  157 PC 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1327-1481 9.63e-41

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 148.29  E-value: 9.63e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1327 CDFEFDLCSWKQEKDEDFDWNLKASSIPAAGTEPaaDHTLGNSSGHYIFINSLFPqQPMRAARISSPVIS-KRSKNCkII 1405
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPP--DHTHGTGSGHYLYVESSSG-REGQKARLLSPLLPpPRSSHC-LS 76
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462518933 1406 FHYHMYGNGIGALTLMQVSVTNQTKVLL-NLTAEQGNFWRREELSLFG-DEDFQLKFEGRVGKGQRGDIALDDIVLTE 1481
Cdd:cd06263     77 FWYHMYGSGVGTLNVYVREEGGGLGTLLwSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1110-1273 1.08e-38

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 142.13  E-value: 1.08e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1110 CSFEKrSLCKWYQpipvhllQDSNTFRWGLGNGISIHHGeenhrPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIIS 1189
Cdd:cd06263      1 CDFED-GLCGWTQ-------DSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLP 67
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1190 LT-GPKCtLVFWTHMNGATVGSLQVLIKKDN--VTSKLWAQTGQQGAQWKRAEVFLG-IRSHTQIVFRAKRGISYIGDVA 1265
Cdd:cd06263     68 PPrSSHC-LSFWYHMYGSGVGTLNVYVREEGggLGTLLWSASGGQGNQWQEAEVTLSaSSKPFQVVFEGVRGSGSRGDIA 146

                   ....*...
gi 2462518933 1266 VDDISFQD 1273
Cdd:cd06263    147 LDDISLSP 154
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
880-1041 1.72e-38

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 141.71  E-value: 1.72e-38
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   880 APELQCNFETG-ICNWEQDAKDDFDWTRSQGPTPtlNTGPMKDNTLGTakGHYLYIESSEPQAFQdSAALLSPILNATDT 958
Cdd:smart00137    1 TSPGNCDFEEGsTCGWHQDSNDDGHWERVSSATG--IPGPNRDHTTGN--GHFMFFETSSGAEGQ-TARLLSPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   959 KGCtFRFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISS-RQPFQILVEASVGDGFTGDIAIDDL 1037
Cdd:smart00137   76 THC-LTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSwPQPFQVVFEGTRGKGHSGYIALDDI 154

                    ....
gi 2462518933  1038 SFMD 1041
Cdd:smart00137  155 LLSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1749-1910 8.55e-37

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 136.74  E-value: 8.55e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1749 CNFETSsgnwttACSLTQDSEDDLDWAIGSRIPAKALIPDSDHTPGSGQHFLYVNSSGSKEGSVARITTSKSFPASLGMC 1828
Cdd:cd06263      1 CDFEDG------LCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPRSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1829 tVRFWFYMIDpRSMGILKVYTIEESG-LNILVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDISF 1906
Cdd:cd06263     75 -LSFWYHMYG-SGVGTLNVYVREEGGgLGTLLWSASGGQGNQWQEAEVTLSASSkPFQVVFEGVRGSGSRGDIALDDISL 152

                   ....*
gi 2462518933 1907 TP-EC 1910
Cdd:cd06263    153 SPgPC 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
674-833 1.55e-35

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 133.27  E-value: 1.55e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  674 CDFEANSCDWfEAISGDHFDWIRSSQSELSADfehqaPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQT-GPGC 752
Cdd:cd06263      1 CDFEDGLCGW-TQDSTDDFDWTRVSGSTPSPG-----TPPDHTHGTGSGHYLYVESSSGREGQKARLLSPLLPPPrSSHC 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  753 iLSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRFE 832
Cdd:cd06263     75 -LSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSGSRGDIALDDISLS 153

                   .
gi 2462518933  833 N 833
Cdd:cd06263    154 P 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1749-1909 1.87e-35

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 133.26  E-value: 1.87e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1749 CNFETSSgnwttACSLTQDSEDDLDWAIGSRIPAKAlIPDSDHTPGSGQ-HFLYVNSSGSKEGSVARITtSKSFPASLGM 1827
Cdd:pfam00629    1 CDFEDGN-----LCGWTQDSSDDFDWERVSGPSVKT-GPSSDHTQGTGSgHFMYVDTSSGAPGQTARLL-SPLLPPSRSP 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1828 CTVRFWFYMIDPrSMGILKVYTIEESG-LNILVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDIS 1905
Cdd:pfam00629   74 QCLRFWYHMSGS-GVGTLRVYVRENGGtLDTLLWSISGDQGPSWKEARVTLSSSTqPFQVVFEGIRGGGSRGGIALDDIS 152

                   ....
gi 2462518933 1906 FTPE 1909
Cdd:pfam00629  153 LSSG 156
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
674-834 1.89e-35

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 133.26  E-value: 1.89e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  674 CDFE-ANSCDWFEAISgDHFDWIRSSqselsADFEHQAPPRDHSLNASQGHFMFILKKSSSLWQVAKLQSPTFSQTGPGC 752
Cdd:pfam00629    1 CDFEdGNLCGWTQDSS-DDFDWERVS-----GPSVKTGPSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLPPSRSPQ 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  753 ILSFWFYNYGLSVGAAELQLHMENSHDSTVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIRF- 831
Cdd:pfam00629   75 CLRFWYHMSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGGSRGGIALDDISLs 154

                   ....
gi 2462518933  832 -ENC 834
Cdd:pfam00629  155 sGPC 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
1541-1693 8.75e-35

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 130.96  E-value: 8.75e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1541 CTFEKGWCGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGNENGHFMYLEATAvGLRGDKAHFRS-TMWRESSAACtMSFW 1619
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSS-GREGQKARLLSpLLPPPRSSHC-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462518933 1620 YFISAKATGSIQILIKTEKG--LSKVWQESkQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEFKN 1693
Cdd:cd06263     79 YHMYGSGVGTLNVYVREEGGglGTLLWSAS-GGQGNQWQEAEVTLSASSKpFQVVFEGVRGSGSRGDIALDDISLSP 154
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1110-1275 1.31e-34

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 130.56  E-value: 1.31e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1110 CSFEKRSLCKWYQPIPVHllqdsntFRWGLGNGISIHHGeenhrPSVDHTQNTTDGWYLYADSSNGKFGDTADILTPIIS 1189
Cdd:pfam00629    1 CDFEDGNLCGWTQDSSDD-------FDWERVSGPSVKTG-----PSSDHTQGTGSGHFMYVDTSSGAPGQTARLLSPLLP 68
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1190 LTGPKCTLVFWTHMNGATVGSLQVLIKKDNVT--SKLWAQTGQQGAQWKRAEVFLGIRSH-TQIVFRAKRGISYIGDVAV 1266
Cdd:pfam00629   69 PSRSPQCLRFWYHMSGSGVGTLRVYVRENGGTldTLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGGIAL 148
                          170
                   ....*....|.
gi 2462518933 1267 DDISFQ--DCS 1275
Cdd:pfam00629  149 DDISLSsgPCP 159
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1541-1691 1.06e-32

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 125.17  E-value: 1.06e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1541 CTFEKGW-CGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGNENGHFMYLEATAvGLRGDKAHFRS-TMWRESSAACtMSF 1618
Cdd:pfam00629    1 CDFEDGNlCGWTQDSSDDFDWERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSS-GAPGQTARLLSpLLPPSRSPQC-LRF 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462518933 1619 WYFISAKATGSIQILIKTEKG--LSKVWQeSKQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEF 1691
Cdd:pfam00629   79 WYHMSGSGVGTLRVYVRENGGtlDTLLWS-ISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGGIALDDISL 153
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
1327-1483 4.22e-32

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 123.63  E-value: 4.22e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1327 CDFEFD-LCSWKQEKDEDFDWnlKASSIPAAGTEPAADHTLGNSSGHYIFINSLFPQqPMRAARISSPVISKRSKNCKII 1405
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDW--ERVSGPSVKTGPSSDHTQGTGSGHFMYVDTSSGA-PGQTARLLSPLLPPSRSPQCLR 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933 1406 FHYHMYGNGIGALTL-MQVSVTNQTKVLLNLTAEQGNFWRREELSL-FGDEDFQLKFEGRVGKGQRGDIALDDIVLTE-N 1482
Cdd:pfam00629   78 FWYHMSGSGVGTLRVyVRENGGTLDTLLWSISGDQGPSWKEARVTLsSSTQPFQVVFEGIRGGGSRGGIALDDISLSSgP 157

                   .
gi 2462518933 1483 C 1483
Cdd:pfam00629  158 C 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1322-1481 3.89e-31

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 120.91  E-value: 3.89e-31
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1322 TSSGRCDFEFD-LCSWKQEKDEDFDWnlKASSIPAAGTEPAADHTLGNssGHYIFINSLFPQQPMRAARISSPVISKRSK 1400
Cdd:smart00137    1 TSPGNCDFEEGsTCGWHQDSNDDGHW--ERVSSATGIPGPNRDHTTGN--GHFMFFETSSGAEGQTARLLSPPLYENRST 76
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1401 NCkIIFHYHMYGNGIGALTL-MQVSVTNQTKVLLNLTAEQGNFWRREELSLFG-DEDFQLKFEGRVGKGQRGDIALDDIV 1478
Cdd:smart00137   77 HC-LTFWYYMYGSGSGTLNVyVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSwPQPFQVVFEGTRGKGHSGYIALDDIL 155

                    ...
gi 2462518933  1479 LTE 1481
Cdd:smart00137  156 LSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1110-1273 1.33e-26

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 107.81  E-value: 1.33e-26
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1110 CSFEKRSLCKWyqpipVHLLQDSNTFRWGLGNgisihhgEENHRPSVDHTQNttDGWYLYADSSNGKFGDTADILTPIIS 1189
Cdd:smart00137    6 CDFEEGSTCGW-----HQDSNDDGHWERVSSA-------TGIPGPNRDHTTG--NGHFMFFETSSGAEGQTARLLSPPLY 71
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1190 LTGPKCTLVFWTHMNGATVGSLQVLIKKDN--VTSKLWAQTGQQGAQWKRAEVFLGIRSHT-QIVFRAKRGISYIGDVAV 1266
Cdd:smart00137   72 ENRSTHCLTFWYYMYGSGSGTLNVYVRENNgsQDTLLWSRSGTQGGQWLQAEVALSSWPQPfQVVFEGTRGKGHSGYIAL 151

                    ....*..
gi 2462518933  1267 DDISFQD 1273
Cdd:smart00137  152 DDILLSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
93-246 3.28e-26

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 106.69  E-value: 3.28e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   93 CDFEDGLCHMTQDQSLQPSWTKRSGMIGLS-PPFYDHNGDVSAHFLSLVSRVDSISSS--LRSRVFLPTNDQHdCqITFY 169
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTPSPgTPPDHTHGTGSGHYLYVESSSGREGQKarLLSPLLPPPRSSH-C-LSFW 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462518933  170 YF-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQS-SQRFQVVFEGQMASTYEQDevIAIDDISFSSG 246
Cdd:cd06263     79 YHmYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSAsSKPFQVVFEGVRGSGSRGD--IALDDISLSPG 155
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1747-1908 1.48e-25

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 104.73  E-value: 1.48e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1747 GSCNFEtssgnWTTACSLTQDSEDDLDWAIGSRIPAKALiPDSDHTPGSGqHFLYVNSSGSKEGSVARITtSKSFPASLG 1826
Cdd:smart00137    4 GNCDFE-----EGSTCGWHQDSNDDGHWERVSSATGIPG-PNRDHTTGNG-HFMFFETSSGAEGQTARLL-SPPLYENRS 75
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1827 MCTVRFWFYMIDPRSmGILKVYTIEESGLNI-LVWSVIGNKRTGWTYGSVPLSSNS-PFKVAFEADLDGNEDIFIALDDI 1904
Cdd:smart00137   76 THCLTFWYYMYGSGS-GTLNVYVRENNGSQDtLLWSRSGTQGGQWLQAEVALSSWPqPFQVVFEGTRGKGHSGYIALDDI 154

                    ....
gi 2462518933  1905 SFTP 1908
Cdd:smart00137  155 LLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
1540-1693 2.15e-25

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 104.35  E-value: 2.15e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  1540 SCTFEKGW-CGWQNSQADNFDWVLGVGSHQSLRPPKDHTLGneNGHFMYLEATaVGLRGDKAHFRSTMWRESSAACTMSF 1618
Cdd:smart00137    5 NCDFEEGStCGWHQDSNDDGHWERVSSATGIPGPNRDHTTG--NGHFMFFETS-SGAEGQTARLLSPPLYENRSTHCLTF 81
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462518933  1619 WYFISAKATGSIQILIKTEKG--LSKVWqESKQNPGNHWQKADILLGKLRN-FEVIFQGIRTRDLGGGAAIDDIEFKN 1693
Cdd:smart00137   82 WYYMYGSGSGTLNVYVRENNGsqDTLLW-SRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHSGYIALDDILLSN 158
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
674-833 3.52e-24

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 100.88  E-value: 3.52e-24
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   674 CDFE-ANSCDWfEAISGDHFDWIRSSQSELSAdfehqAPPRDHSLNasQGHFMFILKKSSSLWQVAKLQSPTFSQTGPGC 752
Cdd:smart00137    6 CDFEeGSTCGW-HQDSNDDGHWERVSSATGIP-----GPNRDHTTG--NGHFMFFETSSGAEGQTARLLSPPLYENRSTH 77
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   753 ILSFWFYNYGLSVGAaeLQLHMENSHDS--TVIWRVLYNQGKQWLEATIQLGRLSQPFHLSLDKVSLGIYDGVSAIDDIR 830
Cdd:smart00137   78 CLTFWYYMYGSGSGT--LNVYVRENNGSqdTLLWSRSGTQGGQWLQAEVALSSWPQPFQVVFEGTRGKGHSGYIALDDIL 155

                    ...
gi 2462518933   831 FEN 833
Cdd:smart00137  156 LSN 158
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
496-652 4.51e-24

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 100.53  E-value: 4.51e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  496 CDFESGFCGWEPFLTEDSHWKLMKGLNNgeHHFPAADHTANINHGSFIYLEA-QRSPG-VAKLGSPVLTklLTASTPCqV 573
Cdd:cd06263      1 CDFEDGLCGWTQDSTDDFDWTRVSGSTP--SPGTPPDHTHGTGSGHYLYVESsSGREGqKARLLSPLLP--PPRSSHC-L 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  574 QFWYHLS--QHSNLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLiaeaGESTLPFQLILEATVLSSNA-TVALDDIS 650
Cdd:cd06263     76 SFWYHMYgsGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTL----SASSKPFQVVFEGVRGSGSRgDIALDDIS 151

                   ..
gi 2462518933  651 VS 652
Cdd:cd06263    152 LS 153
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
496-654 6.57e-23

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 97.05  E-value: 6.57e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  496 CDFESG-FCGWEPFLTEDSHWKLMKGLNngEHHFPAADHTANINHGSFIYLEAQRSPG--VAKLGSPVLTklLTASTPCq 572
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPS--VKTGPSSDHTQGTGSGHFMYVDTSSGAPgqTARLLSPLLP--PSRSPQC- 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  573 VQFWYHLSQHS--NLSVFTRTSLDGNLQKQGKIIRFSESQWSHAKIDLiaeaGESTLPFQLILEATVLSSNA-TVALDDI 649
Cdd:pfam00629   76 LRFWYHMSGSGvgTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTL----SSSTQPFQVVFEGIRGGGSRgGIALDDI 151

                   ....*
gi 2462518933  650 SVSQE 654
Cdd:pfam00629  152 SLSSG 156
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
93-246 6.90e-20

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 88.57  E-value: 6.90e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   93 CDFEDG-LCHMTQDQSLQPSWTKRSGMIGLSPPFYDHNGDVSA-HFLSLVSRVDSISSS--LRSRVFLPTNDQHdCqITF 168
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDDFDWERVSGPSVKTGPSSDHTQGTGSgHFMYVDTSSGAPGQTarLLSPLLPPSRSPQ-C-LRF 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  169 YYF-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQSSQR-FQVVFEGQMASTYEQDevIAIDDISFSSG 246
Cdd:pfam00629   79 WYHmSGSGVGTLRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQpFQVVFEGIRGGGSRGG--IALDDISLSSG 156
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
494-652 7.41e-19

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 85.47  E-value: 7.41e-19
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   494 LTCDFESG-FCGWEPFLTEDSHWKLMKGLNNGEHhfPAADHTanINHGSFIYLEAQ-RSPG-VAKLGSPVLTklLTASTP 570
Cdd:smart00137    4 GNCDFEEGsTCGWHQDSNDDGHWERVSSATGIPG--PNRDHT--TGNGHFMFFETSsGAEGqTARLLSPPLY--ENRSTH 77
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   571 CqVQFWYHL--SQHSNLSVFTRtslDGNLQKQGKIIRFSE---SQWSHAKIDLIAEAGestlPFQLILEATVLSSNA-TV 644
Cdd:smart00137   78 C-LTFWYYMygSGSGTLNVYVR---ENNGSQDTLLWSRSGtqgGQWLQAEVALSSWPQ----PFQVVFEGTRGKGHSgYI 149

                    ....*...
gi 2462518933   645 ALDDISVS 652
Cdd:smart00137  150 ALDDILLS 157
MAM cd06263
Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular ...
290-438 7.72e-14

Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.


Pssm-ID: 99706  Cd Length: 157  Bit Score: 71.25  E-value: 7.72e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  290 CGFEFDMCEWTSEASAGqISWMRTKAREIPafESTPQQDQGGDDEGYYVWVGAKHGftlnHLDSRAYLNSSVCH-CLGKS 368
Cdd:cd06263      1 CDFEDGLCGWTQDSTDD-FDWTRVSGSTPS--PGTPPDHTHGTGSGHYLYVESSSG----REGQKARLLSPLLPpPRSSH 73
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462518933  369 ChLQFYYAMESS---VLRV--RLYNNKEEEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 438
Cdd:cd06263     74 C-LSFWYHMYGSgvgTLNVyvREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSgSRGDIALD 148
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
93-246 3.57e-12

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 66.21  E-value: 3.57e-12
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933    93 CDFEDG-LCHMTQDQSLQPSWTKRSGMIGLSPPFYDH-NGDVSAHFLSLVSRVDSISSSLRSRVFLPTNDQHdCqITFYY 170
Cdd:smart00137    6 CDFEEGsTCGWHQDSNDDGHWERVSSATGIPGPNRDHtTGNGHFMFFETSSGAEGQTARLLSPPLYENRSTH-C-LTFWY 83
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462518933   171 F-SCQVSGKLMVGLQTACGGPIQHLWQNTAALPNQWERNVIKIQSSQR-FQVVFEGQMASTYEQDevIAIDDISFSSG 246
Cdd:smart00137   84 YmYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSWPQpFQVVFEGTRGKGHSGY--IALDDILLSNG 159
MAM smart00137
Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an ...
290-438 1.08e-09

Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others); Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.


Pssm-ID: 214533 [Multi-domain]  Cd Length: 161  Bit Score: 59.28  E-value: 1.08e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933   290 CGFEFD-MCEWtSEASAGQISWMRTKAREipaFESTPQQDQGGDDeGYYVWVGA---KHGftlnhldSRAYLNSSVCHCL 365
Cdd:smart00137    6 CDFEEGsTCGW-HQDSNDDGHWERVSSAT---GIPGPNRDHTTGN-GHFMFFETssgAEG-------QTARLLSPPLYEN 73
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462518933   366 GKSCHLQFYYAM---ESSVLRVRLYNNKEEEIFWTYNISTH--SQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 438
Cdd:smart00137   74 RSTHCLTFWYYMygsGSGTLNVYVRENNGSQDTLLWSRSGTqgGQWLQAEVALSSWPQPFQVVFEGTRGKgHSGYIALD 152
MAM pfam00629
MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain ...
290-438 2.85e-09

MAM domain, meprin/A5/mu; An extracellular domain found in many receptors. The MAM domain along with the associated Ig domain in type IIB receptor protein tyrosine phosphatases forms a structural unit (termed MIg) with a seamless interdomain interface. It plays a major role in homodimerization of the phosphatase ectoprotein and in cell adhesion. MAM is a beta-sandwich consisting of two five-stranded antiparallel beta-sheets rotated away from each other by approx 25 degrees, and plays a similar role in meprin metalloproteinases.


Pssm-ID: 459878 [Multi-domain]  Cd Length: 159  Bit Score: 58.14  E-value: 2.85e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462518933  290 CGFEFD-MCEWTSEASAGqISWMRTKAREIPafeSTPQQD-QGGDDEGYYVWVGAKHGftlnHLDSRAYLNSSVCHCLGK 367
Cdd:pfam00629    1 CDFEDGnLCGWTQDSSDD-FDWERVSGPSVK---TGPSSDhTQGTGSGHFMYVDTSSG----APGQTARLLSPLLPPSRS 72
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462518933  368 SCHLQFYYAMESS-----VLRVRLYNNKEEEIFWTYNISTHSQWVKADVLIPEDLKTFKIIFEGTLLS-QRSFIALD 438
Cdd:pfam00629   73 PQCLRFWYHMSGSgvgtlRVYVRENGGTLDTLLWSISGDQGPSWKEARVTLSSSTQPFQVVFEGIRGGgSRGGIALD 149
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1283-1315 1.10e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 1.10e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 2462518933  1283 KCTAHEFMCANKHCVAKDKLCDFVNDCADNSDE 1315
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1284-1315 1.92e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 51.82  E-value: 1.92e-08
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2462518933 1284 CTAHEFMCANKHCVAKDKLCDFVNDCADNSDE 1315
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1070-1105 6.93e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.28  E-value: 6.93e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1070 CTDNEFICRsDGHCIEKMQKCDFKYDCPDKSDEASC 1105
Cdd:cd00112      1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
454-485 7.97e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.94  E-value: 7.97e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 2462518933   454 CSADEFPCTSGQCIAKESVCDSRQDCSDESDE 485
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
454-486 1.49e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.13  E-value: 1.49e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2462518933  454 CSADEFPCTSGQCIAKESVCDSRQDCSDESDED 486
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1704-1739 1.90e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 48.74  E-value: 1.90e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1704 CPEiTDFLCRDKKCIASHLLCDYKPDCSDRSDEAHC 1739
Cdd:cd00112      1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1923-1958 7.35e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.20  E-value: 7.35e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1923 CEADQFSCiYTLQCVPLSGKCDGHEDCIDGSDEMDC 1958
Cdd:cd00112      1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1967-2001 7.35e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.20  E-value: 7.35e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2462518933 1967 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDELIC 2001
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1967-1998 2.90e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 45.70  E-value: 2.90e-06
                            10        20        30
                    ....*....|....*....|....*....|..
gi 2462518933  1967 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDE 1998
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1070-1102 7.01e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.55  E-value: 7.01e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 2462518933  1070 CTDNEFICRsDGHCIEKMQKCDFKYDCPDKSDE 1102
Cdd:smart00192    2 CPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
454-485 9.06e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.16  E-value: 9.06e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2462518933  454 CSADEFPCTSGQCIAKESVCDSRQDCSDESDE 485
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1704-1736 1.04e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 43.78  E-value: 1.04e-05
                            10        20        30
                    ....*....|....*....|....*....|...
gi 2462518933  1704 CPEiTDFLCRDKKCIASHLLCDYKPDCSDRSDE 1736
Cdd:smart00192    2 CPP-GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1921-1958 1.80e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 43.39  E-value: 1.80e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 2462518933 1921 SPCEADQFSCIYTlQCVPLSGKCDGHEDCIDGSDEMDC 1958
Cdd:pfam00057    1 STCSPNEFQCGSG-ECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1706-1739 2.89e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 42.62  E-value: 2.89e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2462518933 1706 EITDFLCRDKKCIASHLLCDYKPDCSDRSDEAHC 1739
Cdd:pfam00057    4 SPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1503-1537 5.66e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 41.81  E-value: 5.66e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2462518933 1503 CPLGYRECHNGKCYRLEQSCNFVDNCGDNTDENEC 1537
Cdd:cd00112      1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1967-2001 9.47e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 41.47  E-value: 9.47e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 2462518933 1967 CSNMEFPCSTDECIPSLLLCDGVPDCHFNEDELIC 2001
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1923-1955 1.08e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.08  E-value: 1.08e-04
                            10        20        30
                    ....*....|....*....|....*....|...
gi 2462518933  1923 CEADQFSCIYTlQCVPLSGKCDGHEDCIDGSDE 1955
Cdd:smart00192    2 CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
58-87 2.55e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.27  E-value: 2.55e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 2462518933   58 FQCDNGVSLPPDSICDFTDQCGDSSDERHC 87
Cdd:cd00112      6 FRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1282-1315 6.83e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 38.77  E-value: 6.83e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2462518933 1282 RKCTAHEFMCANKHCVAKDKLCDFVNDCADNSDE 1315
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
847-879 1.26e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 37.96  E-value: 1.26e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2462518933  847 DHFWCRHTRaCIEKLRLCDLVDDCGDRTDEVNC 879
Cdd:cd00112      4 NEFRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1503-1534 1.39e-03

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 38.00  E-value: 1.39e-03
                            10        20        30
                    ....*....|....*....|....*....|..
gi 2462518933  1503 CPLGYRECHNGKCYRLEQSCNFVDNCGDNTDE 1534
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1070-1105 4.94e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 36.46  E-value: 4.94e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2462518933 1070 CTDNEFICRSdGHCIEKMQKCDFKYDCPDKSDEASC 1105
Cdd:pfam00057    3 CSPNEFQCGS-GECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
58-84 6.28e-03

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 36.07  E-value: 6.28e-03
                            10        20
                    ....*....|....*....|....*..
gi 2462518933    58 FQCDNGVSLPPDSICDFTDQCGDSSDE 84
Cdd:smart00192    7 FQCDNGRCIPSSWVCDGVDDCGDGSDE 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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