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Conserved domains on  [gi|2462517392|ref|XP_054220961|]
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phospholipid phosphatase 4 isoform X4 [Homo sapiens]

Protein Classification

phosphatase PAP2 family protein( domain architecture ID 10130247)

type 2 phosphatidic acid phosphatase (PAP2) family protein similar to mammalian phospholipid phosphatases that catalyzes the conversion of phosphatidic acid to diacylglycerol

EC:  3.1.3.-
Gene Ontology:  GO:0006644|GO:0008195|GO:0046839
PubMed:  12447906

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PAP2_containing_1_like cd03390
PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. ...
 37-168 3.30e-49

PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.


:

Pssm-ID: 239484 [Multi-domain]  Cd Length: 193  Bit Score: 158.92  E-value: 3.30e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  37 WLYKNPLVQSDNIPTRLMFAISFLTPLAVICVVKIIRRTDKTEIKEAFLAVSLALALNGVCTNTIKLIVGRPRPDFFYRC 116
Cdd:cd03390     1 PSISYPFAESETVPTWLLVIISVGIPLLVIILISLFFRRSLWDLHTSLLGLLLSVSLNGVITNVLKNYAGRPRPDFLARC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392 117 FPDGVMNSEMH------CTGDPDLVSEGRKSFPSIHSSYSF--------------------------------------- 151
Cdd:cd03390    81 FPDGGTPSDTLvgidicCTGDPGVLKEGRKSFPSGHSSFAFaglgflslylagklhifdprgsswrlllallplllailv 160

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2462517392 152 ----------------VGGVIGLIFAYICYRQH 168
Cdd:cd03390   161 avsrtrdyrhhfsdviAGSLIGLIIAYLSYRQY 193
 
Name Accession Description Interval E-value
PAP2_containing_1_like cd03390
PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. ...
 37-168 3.30e-49

PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.


Pssm-ID: 239484 [Multi-domain]  Cd Length: 193  Bit Score: 158.92  E-value: 3.30e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  37 WLYKNPLVQSDNIPTRLMFAISFLTPLAVICVVKIIRRTDKTEIKEAFLAVSLALALNGVCTNTIKLIVGRPRPDFFYRC 116
Cdd:cd03390     1 PSISYPFAESETVPTWLLVIISVGIPLLVIILISLFFRRSLWDLHTSLLGLLLSVSLNGVITNVLKNYAGRPRPDFLARC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392 117 FPDGVMNSEMH------CTGDPDLVSEGRKSFPSIHSSYSF--------------------------------------- 151
Cdd:cd03390    81 FPDGGTPSDTLvgidicCTGDPGVLKEGRKSFPSGHSSFAFaglgflslylagklhifdprgsswrlllallplllailv 160

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2462517392 152 ----------------VGGVIGLIFAYICYRQH 168
Cdd:cd03390   161 avsrtrdyrhhfsdviAGSLIGLIIAYLSYRQY 193
PLN02250 PLN02250
lipid phosphate phosphatase
 12-153 6.22e-31

lipid phosphate phosphatase


Pssm-ID: 215139  Cd Length: 314  Bit Score: 115.02  E-value: 6.22e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  12 ALLFGVFVFTEFLDPFQRVIQPEEIWLYKNPLvQSDNIPTRLMFAISFLTPLAVICVVKIIRRtDKTEIKEAFLAVSLAL 91
Cdd:PLN02250   30 LLLVVIEVVLNVIEPFHRFVGKDMLTDLSYPL-QDNTIPFWAVPLIAILLPFAVILVYYFIRR-DVYDLHHAILGLLFSV 107

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462517392  92 ALNGVCTNTIKLIVGRPRPDFFYRCFPDGV-----MNSEMHCTGDPDLVSEGRKSFPSIHSSYSFVG 153
Cdd:PLN02250  108 LITGVITDAIKDAVGRPRPDFFWRCFPDGKgvfhpVTTDVLCTGAKSVIKEGHKSFPSGHTSWSFAG 174
PAP2 pfam01569
PAP2 superfamily; This family includes the enzyme type 2 phosphatidic acid phosphatase (PAP2), ...
 86-177 1.85e-08

PAP2 superfamily; This family includes the enzyme type 2 phosphatidic acid phosphatase (PAP2), Glucose-6-phosphatase EC:3.1.3.9, Phosphatidylglycerophosphatase B EC:3.1.3.27 and bacterial acid phosphatase EC:3.1.3.2. The family also includes a variety of haloperoxidases that function by oxidising halides in the presence of hydrogen peroxide to form the corresponding hypohalous acids.


Pssm-ID: 426329 [Multi-domain]  Cd Length: 124  Bit Score: 50.88  E-value: 1.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  86 AVSLALALNGVCTNTIKLIVGRPRPDFFYRCFPDgvmnsemhcTGDPDLVSEGRKSFPSIHSSYSFVGGVigLIFAYICY 165
Cdd:pfam01569   1 ILLLALALAGLLSSVLKDYFGRPRPFFLLLEGGL---------VPAPSTLPGLGYSFPSGHSATAFALAL--LLALLLRR 69

                          90
                  ....*....|..
gi 2462517392 166 RQHYPPLANTAC 177
Cdd:pfam01569  70 LRKIVRVLLALL 81
acidPPc smart00014
Acid phosphatase homologues;
83-168 1.55e-07

Acid phosphatase homologues;


Pssm-ID: 214471 [Multi-domain]  Cd Length: 116  Bit Score: 48.11  E-value: 1.55e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392   83 AFLAVSLALAlngvcTNTIKLIVGRPRPDFFYRCFPDgvmnsemhCTGDPDLVSEGRKSFPSIHSSYSFvggVIGLIFA- 161
Cdd:smart00014   1 ALLAVVSQLF-----NGVIKNYFGRPRPFFLSIGDAC--------CTPNFLLTLEAGYSFPSGHTAFAF---AFALFLLl 64


                   ....*..
gi 2462517392  162 YICYRQH 168
Cdd:smart00014  65 YLPARAG 71
PgpB COG0671
Membrane-associated phospholipid phosphatase [Lipid transport and metabolism]; ...
 12-166 2.13e-06

Membrane-associated phospholipid phosphatase [Lipid transport and metabolism]; Membrane-associated phospholipid phosphatase is part of the Pathway/BioSystem: Phospholipid biosynthesis


Pssm-ID: 440435 [Multi-domain]  Cd Length: 189  Bit Score: 46.57  E-value: 2.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  12 ALLFGVFVFTEFLDPFQRVIQPEEIWLYKNPLVQSDNIPTRLMFAISFLTPLAVICVVKIIRRTDKTEIKEAFLAVSLAL 91
Cdd:COG0671     3 LALLLALLLLLLLLADLLALALLALLLLLALLLLLLLLLALLLILLLLLLLLLLLLLLLLLLLRLLALLLLLLLLAALLL 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462517392  92 ALNGVCTNTIKLIVGRPRPDffyrcfpdgvmnseMHCTGDPDLVSEGRKSFPSIHSSYSFvggVIGLIFAYICYR 166
Cdd:COG0671    83 LLLLLLLLLLKYLFGRPRPF--------------VVPDLELLLGTAGGYSFPSGHAAAAF---ALALVLALLLPR 140
 
Name Accession Description Interval E-value
PAP2_containing_1_like cd03390
PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. ...
 37-168 3.30e-49

PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.


Pssm-ID: 239484 [Multi-domain]  Cd Length: 193  Bit Score: 158.92  E-value: 3.30e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  37 WLYKNPLVQSDNIPTRLMFAISFLTPLAVICVVKIIRRTDKTEIKEAFLAVSLALALNGVCTNTIKLIVGRPRPDFFYRC 116
Cdd:cd03390     1 PSISYPFAESETVPTWLLVIISVGIPLLVIILISLFFRRSLWDLHTSLLGLLLSVSLNGVITNVLKNYAGRPRPDFLARC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392 117 FPDGVMNSEMH------CTGDPDLVSEGRKSFPSIHSSYSF--------------------------------------- 151
Cdd:cd03390    81 FPDGGTPSDTLvgidicCTGDPGVLKEGRKSFPSGHSSFAFaglgflslylagklhifdprgsswrlllallplllailv 160

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2462517392 152 ----------------VGGVIGLIFAYICYRQH 168
Cdd:cd03390   161 avsrtrdyrhhfsdviAGSLIGLIIAYLSYRQY 193
PLN02250 PLN02250
lipid phosphate phosphatase
 12-153 6.22e-31

lipid phosphate phosphatase


Pssm-ID: 215139  Cd Length: 314  Bit Score: 115.02  E-value: 6.22e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  12 ALLFGVFVFTEFLDPFQRVIQPEEIWLYKNPLvQSDNIPTRLMFAISFLTPLAVICVVKIIRRtDKTEIKEAFLAVSLAL 91
Cdd:PLN02250   30 LLLVVIEVVLNVIEPFHRFVGKDMLTDLSYPL-QDNTIPFWAVPLIAILLPFAVILVYYFIRR-DVYDLHHAILGLLFSV 107

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462517392  92 ALNGVCTNTIKLIVGRPRPDFFYRCFPDGV-----MNSEMHCTGDPDLVSEGRKSFPSIHSSYSFVG 153
Cdd:PLN02250  108 LITGVITDAIKDAVGRPRPDFFWRCFPDGKgvfhpVTTDVLCTGAKSVIKEGHKSFPSGHTSWSFAG 174
PLN02731 PLN02731
Putative lipid phosphate phosphatase
 24-163 1.53e-20

Putative lipid phosphate phosphatase


Pssm-ID: 178332  Cd Length: 333  Bit Score: 87.78  E-value: 1.53e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  24 LDPFQRVIQPEEIWLYKNPLvQSDNIPTRLMFAISFLTPLaVICVVKIIRRTDKTEIKEAFLAVSLALALNGVCTNTIKL 103
Cdd:PLN02731   61 IHPFYRFVGKDMMTDLSYPL-KSNTVPIWSVPVYAMLLPL-VIFIFIYFRRRDVYDLHHAVLGLLYSVLVTAVLTDAIKN 138

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462517392 104 IVGRPRPDFFYRCFPDG--VMNS--EMHCTGDPDLVSEGRKSFPSIHSSYSFVGgvIGLIFAYI 163
Cdd:PLN02731  139 AVGRPRPDFFWRCFPDGkaLYDSlgDVICHGDKSVIREGHKSFPSGHTSWSFSG--LGFLSLYL 200
PLN02715 PLN02715
lipid phosphate phosphatase
 4-153 1.57e-18

lipid phosphate phosphatase


Pssm-ID: 178317 [Multi-domain]  Cd Length: 327  Bit Score: 82.02  E-value: 1.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392   4 LAIEIGVrallfgvfvftEFLDPFQRVIQPEEIWLYKNPLvQSDNIPTRLMFAISFLTPLaVICVVKIIRRTDKTEIKEA 83
Cdd:PLN02715   58 IAIEIGL-----------NLISPFYRYVGKDMMTDLKYPF-KDNTVPIWSVPVYAVLLPI-ILFVCFYLKRRCVYDLHHS 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462517392  84 FLAVSLALALNGVCTNTIKLIVGRPRPDFFYRCFPDGvmnSEMH-------CTGDPDLVSEGRKSFPSIHSSYSFVG 153
Cdd:PLN02715  125 ILGLLFAVLITGVITDSIKVATGRPRPNFYWRCFPDG---KELYdalggviCHGKAAEVKEGHKSFPSGHTSWSFAG 198
PAP2_wunen cd03384
PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid ...
 84-151 3.34e-12

PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors.


Pssm-ID: 239479  Cd Length: 150  Bit Score: 61.88  E-value: 3.34e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462517392  84 FLAVSLA-LALNGVCTNTIKLIVGRPRPDFFYRCFPDG----------VMNSEMHCTGDPDLVSEGRKSFPSIHSSYSF 151
Cdd:cd03384     5 FVGVFLFgLFATQLLTDLGKYVTGRLRPHFLDVCKPNYtdltcsldhqYIADCTCCTGDPDLIREARLSFPSGHASLSM 83
PAP2_like cd01610
PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, ...
 83-173 2.07e-11

PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.


Pssm-ID: 238813 [Multi-domain]  Cd Length: 122  Bit Score: 59.01  E-value: 2.07e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  83 AFLAVSLALALNGVCTNTIKLIVGRPRPDFFYRCFPDgvmnsemhctGDPDLVSEGRKSFPSIHSSYSFVggVIGLIFAY 162
Cdd:cd01610     4 LALLLLLALLAGLLLTGVLKYLFGRPRPYFLLRCGPD----------GDPLLLTEGGYSFPSGHAAFAFA--LALFLALL 71

                          90
                  ....*....|.
gi 2462517392 163 ICYRQHYPPLA 173
Cdd:cd01610    72 LPRRLLRLLLG 82
PAP2 pfam01569
PAP2 superfamily; This family includes the enzyme type 2 phosphatidic acid phosphatase (PAP2), ...
 86-177 1.85e-08

PAP2 superfamily; This family includes the enzyme type 2 phosphatidic acid phosphatase (PAP2), Glucose-6-phosphatase EC:3.1.3.9, Phosphatidylglycerophosphatase B EC:3.1.3.27 and bacterial acid phosphatase EC:3.1.3.2. The family also includes a variety of haloperoxidases that function by oxidising halides in the presence of hydrogen peroxide to form the corresponding hypohalous acids.


Pssm-ID: 426329 [Multi-domain]  Cd Length: 124  Bit Score: 50.88  E-value: 1.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  86 AVSLALALNGVCTNTIKLIVGRPRPDFFYRCFPDgvmnsemhcTGDPDLVSEGRKSFPSIHSSYSFVGGVigLIFAYICY 165
Cdd:pfam01569   1 ILLLALALAGLLSSVLKDYFGRPRPFFLLLEGGL---------VPAPSTLPGLGYSFPSGHSATAFALAL--LLALLLRR 69

                          90
                  ....*....|..
gi 2462517392 166 RQHYPPLANTAC 177
Cdd:pfam01569  70 LRKIVRVLLALL 81
acidPPc smart00014
Acid phosphatase homologues;
83-168 1.55e-07

Acid phosphatase homologues;


Pssm-ID: 214471 [Multi-domain]  Cd Length: 116  Bit Score: 48.11  E-value: 1.55e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392   83 AFLAVSLALAlngvcTNTIKLIVGRPRPDFFYRCFPDgvmnsemhCTGDPDLVSEGRKSFPSIHSSYSFvggVIGLIFA- 161
Cdd:smart00014   1 ALLAVVSQLF-----NGVIKNYFGRPRPFFLSIGDAC--------CTPNFLLTLEAGYSFPSGHTAFAF---AFALFLLl 64


                   ....*..
gi 2462517392  162 YICYRQH 168
Cdd:smart00014  65 YLPARAG 71
PAP2_like_2 cd03392
PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This ...
 51-168 9.46e-07

PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.


Pssm-ID: 239486  Cd Length: 182  Bit Score: 47.22  E-value: 9.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  51 TRLMFAISFL------TPL-AVICVVKIIRRTdkteiKEAFLAVSLALALNGVCTNTIKLIVGRPRPDFFYRCFPDGvmn 123
Cdd:cd03392    29 TAFMTAITFLgspavlLIIvLLLALLLLLKRR-----RRAALFLLLALLGGGALNTLLKLLVQRPRPPLHLLVPEGG--- 100

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2462517392 124 semhctgdpdlvsegrKSFPSIHSSYSFVggVIGLIFAYICYRQH 168
Cdd:cd03392   101 ----------------YSFPSGHAMGATV--LYGFLAYLLARRLP 127
PgpB COG0671
Membrane-associated phospholipid phosphatase [Lipid transport and metabolism]; ...
 12-166 2.13e-06

Membrane-associated phospholipid phosphatase [Lipid transport and metabolism]; Membrane-associated phospholipid phosphatase is part of the Pathway/BioSystem: Phospholipid biosynthesis


Pssm-ID: 440435 [Multi-domain]  Cd Length: 189  Bit Score: 46.57  E-value: 2.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  12 ALLFGVFVFTEFLDPFQRVIQPEEIWLYKNPLVQSDNIPTRLMFAISFLTPLAVICVVKIIRRTDKTEIKEAFLAVSLAL 91
Cdd:COG0671     3 LALLLALLLLLLLLADLLALALLALLLLLALLLLLLLLLALLLILLLLLLLLLLLLLLLLLLLRLLALLLLLLLLAALLL 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462517392  92 ALNGVCTNTIKLIVGRPRPDffyrcfpdgvmnseMHCTGDPDLVSEGRKSFPSIHSSYSFvggVIGLIFAYICYR 166
Cdd:COG0671    83 LLLLLLLLLLKYLFGRPRPF--------------VVPDLELLLGTAGGYSFPSGHAAAAF---ALALVLALLLPR 140
PAP2_like_5 cd03394
PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This ...
 81-173 1.98e-04

PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.


Pssm-ID: 239488 [Multi-domain]  Cd Length: 106  Bit Score: 39.24  E-value: 1.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462517392  81 KEAFLAVSLALALNGVCTNTIKLIVGRPRPDffyrcfpdgvmnsemhctGDPDlvseGRKSFPSIHSSYSFVGGVigliF 160
Cdd:cd03394     2 REGLLILAEAAALTAAVTEGLKFAVGRARPD------------------GSNN----GYRSFPSGHTASAFAAAT----F 55

                          90
                  ....*....|...
gi 2462517392 161 AYICYRQHYPPLA 173
Cdd:cd03394    56 LQYRYGWRWYGIP 68
PAP2_lipid_A_1_phosphatase cd03389
PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from ...
 89-160 1.60e-03

PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.


Pssm-ID: 239483  Cd Length: 186  Bit Score: 38.07  E-value: 1.60e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462517392  89 LALALNGVCTNTIKLIVGRPRPDFFyrcFPDGvMNSEMHCTGDPDLvsegrKSFPSIHSSYSF-VGGVIGLIF 160
Cdd:cd03389    76 ATVALSGILVNLLKFIIGRARPKLL---FDDG-LYGFDPFHADYAF-----TSFPSGHSATAGaAAAALALLF 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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